Wall clock time and date at job start Tue Mar 31 2020 13:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00092 * 2 1 4 4 H 1.48501 * 109.47337 * 270.00230 * 3 2 1 5 5 H 1.48503 * 109.47209 * 30.00913 * 3 2 1 6 6 H 1.48507 * 109.47117 * 150.00144 * 3 2 1 7 7 C 1.38735 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99573 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99999 * 179.97438 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25662 * 10 9 7 12 12 C 1.38136 * 120.20068 * 179.69570 * 11 10 9 13 13 C 1.38083 * 120.24270 * 0.59899 * 12 11 10 14 14 C 1.39629 * 120.03871 * 359.67840 * 13 12 11 15 15 C 1.47865 * 120.09952 * 180.02562 * 14 13 12 16 16 O 1.21553 * 120.00105 * 179.97438 * 15 14 13 17 17 N 1.34773 * 120.00337 * 359.97438 * 15 14 13 18 18 C 1.46497 * 120.00586 * 179.97438 * 17 15 14 19 19 C 1.52992 * 109.47608 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47399 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47109 * 180.02562 * 20 19 18 22 22 C 1.50701 * 109.46960 * 180.02562 * 21 20 19 23 23 O 1.20829 * 120.00189 * 0.02562 * 22 21 20 24 24 O 1.34224 * 119.99801 * 180.02562 * 22 21 20 25 25 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 26 26 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.89882 * 359.97193 * 11 10 9 28 28 H 1.08002 * 119.87655 * 180.27610 * 12 11 10 29 29 H 1.08002 * 119.98159 * 179.70047 * 13 12 11 30 30 H 0.97001 * 119.99868 * 359.97438 * 17 15 14 31 31 H 1.08998 * 109.47020 * 300.00392 * 18 17 15 32 32 H 1.09004 * 109.46604 * 59.99596 * 18 17 15 33 33 H 1.08998 * 109.47535 * 300.00425 * 19 18 17 34 34 H 1.09004 * 109.47184 * 60.00299 * 19 18 17 35 35 H 1.08992 * 109.47222 * 300.00085 * 20 19 18 36 36 H 1.09002 * 109.46880 * 60.00518 * 20 19 18 37 37 H 1.09005 * 109.46996 * 300.00375 * 21 20 19 38 38 H 1.09002 * 109.46859 * 60.00465 * 21 20 19 39 39 H 0.96708 * 116.99813 * 180.02562 * 24 22 21 40 40 H 1.07996 * 120.11843 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0099 -1.2015 -0.0005 8 1 1.4698 -2.1368 -0.0005 9 16 3.7719 -1.2016 -0.0012 10 6 4.0778 -2.9298 -0.1565 11 6 4.2973 -3.7032 0.9801 12 6 4.5313 -5.0596 0.8631 13 6 4.5612 -5.6553 -0.3822 14 6 4.3481 -4.8882 -1.5293 15 6 4.3793 -5.5248 -2.8635 16 8 4.1930 -4.8554 -3.8608 17 7 4.6143 -6.8473 -2.9739 18 6 4.6446 -7.4782 -4.2957 19 6 4.9290 -8.9734 -4.1408 20 6 4.9601 -9.6324 -5.5213 21 6 5.2438 -11.1279 -5.3663 22 6 5.2750 -11.7768 -6.7261 23 8 5.0899 -11.1114 -7.7175 24 8 5.5086 -13.0940 -6.8359 25 6 4.1056 -3.5202 -1.4128 26 1 -0.4850 0.8400 0.0004 27 1 4.2803 -3.2421 1.9565 28 1 4.6965 -5.6554 1.7487 29 1 4.7493 -6.7152 -0.4691 30 1 4.7633 -7.3815 -2.1780 31 1 3.6812 -7.3401 -4.7864 32 1 5.4286 -7.0201 -4.8989 33 1 5.8925 -9.1112 -3.6503 34 1 4.1453 -9.4318 -3.5375 35 1 3.9963 -9.4947 -6.0114 36 1 5.7435 -9.1743 -6.1250 37 1 6.2075 -11.2660 -4.8759 38 1 4.4601 -11.5857 -4.7628 39 1 5.5194 -13.4650 -7.7289 40 1 3.9395 -2.9220 -2.2965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:26 Heat of formation + Delta-G solvation = -124.185229 kcal Electronic energy + Delta-G solvation = -22771.524240 eV Core-core repulsion = 19062.538596 eV Total energy + Delta-G solvation = -3708.985644 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72724 -40.00162 -38.00249 -36.87254 -36.18856 -34.08884 -32.49799 -31.33589 -30.65722 -29.65035 -25.68262 -25.58046 -23.43765 -22.51580 -21.93452 -21.28381 -20.32667 -18.59638 -18.33715 -17.37255 -16.91990 -16.88719 -16.19982 -15.88906 -15.72090 -15.23699 -14.91289 -14.75868 -14.39452 -13.93667 -13.66588 -13.58296 -13.44862 -12.93866 -12.84904 -12.48313 -12.28319 -12.09490 -11.97549 -11.94331 -11.67061 -11.35930 -11.21142 -11.16723 -11.09775 -11.06109 -10.63489 -9.95209 -9.82621 -9.25156 -9.17310 -9.08132 -8.65643 -8.16742 -7.13681 -6.32878 -4.08516 1.09170 1.57876 1.71799 2.50443 2.85274 3.03028 3.12165 3.27634 3.38689 3.50241 4.06088 4.14970 4.26331 4.36917 4.52376 4.65761 4.75412 4.86112 4.89514 4.98115 5.02639 5.06017 5.12215 5.17191 5.24232 5.34445 5.57891 5.66084 5.73930 5.77528 5.80708 5.91511 6.01725 6.16789 6.31145 6.50254 6.55414 6.81981 7.09526 7.38980 7.44410 7.91231 8.25579 8.44571 9.10909 10.76506 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.001900 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.341599 B =14735.432837 C =15297.517800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.095 3.905 3 Si 0.858 3.142 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.510 4.510 8 H 0.091 0.909 9 S -0.112 6.112 10 C -0.085 4.085 11 C -0.052 4.052 12 C -0.140 4.140 13 C -0.086 4.086 14 C -0.153 4.153 15 C 0.563 3.437 16 O -0.532 6.532 17 N -0.733 5.733 18 C 0.119 3.881 19 C -0.131 4.131 20 C -0.108 4.108 21 C -0.113 4.113 22 C 0.476 3.524 23 O -0.514 6.514 24 O -0.520 6.520 25 C -0.017 4.017 26 H 0.272 0.728 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.399 0.601 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.411 0.589 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.823 -24.891 -5.380 28.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.114 4.114 3 Si 0.683 3.317 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.164 1.164 7 C -0.657 4.657 8 H 0.109 0.891 9 S 0.122 5.878 10 C -0.196 4.196 11 C -0.073 4.073 12 C -0.160 4.160 13 C -0.105 4.105 14 C -0.157 4.157 15 C 0.351 3.649 16 O -0.409 6.409 17 N -0.387 5.387 18 C -0.005 4.005 19 C -0.169 4.169 20 C -0.147 4.147 21 C -0.150 4.150 22 C 0.318 3.682 23 O -0.402 6.402 24 O -0.333 6.333 25 C -0.039 4.039 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.234 0.766 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.270 0.730 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.164 -22.997 -5.917 27.151 hybrid contribution -0.705 -0.914 -0.353 1.208 sum 12.458 -23.912 -6.270 27.682 Atomic orbital electron populations 1.69928 1.05849 1.27808 1.47556 1.24749 0.94526 0.98855 0.93276 0.86729 0.81562 0.83468 0.79972 1.19013 1.19786 1.16351 1.22249 0.86731 0.97727 1.58962 0.89070 1.83066 1.11264 0.97850 1.95627 1.22206 1.02203 1.01085 0.94102 1.21898 0.93550 0.93068 0.98740 1.21047 1.02776 0.95092 0.97036 1.21167 0.98492 0.98602 0.92251 1.19839 1.08640 0.94998 0.92271 1.18376 0.75896 0.81501 0.89114 1.90787 1.48628 1.62973 1.38548 1.45867 1.74540 1.08906 1.09355 1.21304 1.02693 0.91635 0.84820 1.21782 1.02948 0.94624 0.97517 1.21353 1.04275 0.91852 0.97182 1.21393 1.05934 0.96227 0.91483 1.23606 0.71911 0.79874 0.92767 1.90762 1.45188 1.64114 1.40086 1.84537 1.83748 1.25623 1.39345 1.21906 0.91211 0.92690 0.98049 0.91806 0.84903 0.85611 0.86320 0.76590 0.91182 0.91241 0.90821 0.90778 0.90360 0.90398 0.87423 0.87387 0.73044 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.32 13.97 55.49 0.78 -25.55 16 2 C 0.09 2.74 5.50 -17.45 -0.10 2.65 16 3 Si 0.86 21.07 27.73 -169.99 -4.71 16.36 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.24 -5.68 6.74 56.52 0.38 -5.30 16 7 C -0.51 -14.66 10.01 30.92 0.31 -14.36 16 8 H 0.09 2.85 8.02 -52.49 -0.42 2.42 16 9 S -0.11 -2.72 19.38 -107.50 -2.08 -4.80 16 10 C -0.09 -1.77 5.45 -38.99 -0.21 -1.98 16 11 C -0.05 -0.89 9.79 -39.25 -0.38 -1.27 16 12 C -0.14 -1.89 10.02 -39.68 -0.40 -2.29 16 13 C -0.09 -1.11 9.54 -39.12 -0.37 -1.48 16 14 C -0.15 -2.49 5.87 -105.00 -0.62 -3.11 16 15 C 0.56 8.87 7.77 -12.32 -0.10 8.78 16 16 O -0.53 -10.55 16.34 5.32 0.09 -10.46 16 17 N -0.73 -7.82 5.51 -61.25 -0.34 -8.16 16 18 C 0.12 1.09 5.67 -4.05 -0.02 1.06 16 19 C -0.13 -0.67 5.33 -26.73 -0.14 -0.81 16 20 C -0.11 -0.60 4.51 -26.73 -0.12 -0.72 16 21 C -0.11 -0.45 5.81 -27.88 -0.16 -0.61 16 22 C 0.48 3.10 8.33 36.01 0.30 3.40 16 23 O -0.51 -5.31 16.74 -18.75 -0.31 -5.62 16 24 O -0.52 -2.40 13.42 -39.24 -0.53 -2.93 16 25 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 26 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.01 6.40 -52.49 -0.34 0.67 16 30 H 0.40 3.00 6.50 -40.82 -0.27 2.74 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.41 0.40 9.10 45.56 0.41 0.82 16 40 H 0.14 3.03 7.65 -52.49 -0.40 2.62 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -36.91 364.13 -8.39 -45.30 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.39 Total: 1.81 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.38 Total: -11.44 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.44 Total: -33.71 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.75 Total: -19.01 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.36 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.08 Total: -4.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.91 -8.39 -45.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.887 kcal (2) G-P(sol) polarization free energy of solvation -36.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds