Wall clock time and date at job start Tue Mar 31 2020 14:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81000 * 109.46989 * 2 1 4 4 C 1.76205 * 99.99610 * 180.02562 * 3 2 1 5 5 C 1.39044 * 120.18852 * 0.02562 * 4 3 2 6 6 C 1.37905 * 120.06068 * 179.97438 * 5 4 3 7 7 C 1.38670 * 120.44772 * 359.97438 * 6 5 4 8 8 C 1.37702 * 120.38393 * 0.02562 * 7 6 5 9 9 C 1.39820 * 119.92052 * 359.73882 * 8 7 6 10 10 C 1.47242 * 120.21983 * 180.27752 * 9 8 7 11 11 O 1.21530 * 120.00033 * 180.22632 * 10 9 8 12 12 O 1.34780 * 119.99709 * 0.23798 * 10 9 8 13 13 C 1.45201 * 116.99642 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46775 * 179.97438 * 13 12 10 15 15 O 1.21276 * 120.00423 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99810 * 179.97438 * 14 13 12 17 17 C 1.46507 * 120.00019 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.46947 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99996 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99620 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99973 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99806 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47307 * 89.99631 * 22 20 18 24 24 H 1.48500 * 109.46979 * 209.99875 * 22 20 18 25 25 H 1.48497 * 109.47033 * 329.99549 * 22 20 18 26 26 H 1.09004 * 109.46930 * 299.99794 * 1 2 3 27 27 H 1.09000 * 109.47312 * 59.99850 * 1 2 3 28 28 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46930 * 240.00206 * 2 1 3 30 30 H 1.09004 * 109.47059 * 120.00604 * 2 1 3 31 31 H 1.07996 * 119.96871 * 359.94822 * 5 4 3 32 32 H 1.07998 * 119.77478 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.80397 * 179.97438 * 7 6 5 34 34 H 1.07992 * 120.03848 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.47008 * 299.98740 * 13 12 10 36 36 H 1.08994 * 109.47501 * 59.99556 * 13 12 10 37 37 H 0.97004 * 120.00069 * 0.02562 * 16 14 13 38 38 H 1.09002 * 109.46564 * 299.99945 * 17 16 14 39 39 H 1.08994 * 109.47019 * 60.00195 * 17 16 14 40 40 H 0.97000 * 119.99435 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4165 -0.0008 5 6 4.3631 0.1159 -0.0017 6 6 5.7239 -0.1080 -0.0029 7 6 6.6114 0.9574 -0.0036 8 6 6.1445 2.2529 -0.0027 9 6 4.7679 2.4980 -0.0065 10 6 4.2614 3.8806 -0.0117 11 8 3.0641 4.0891 -0.0109 12 8 5.1256 4.9148 -0.0177 13 6 4.5554 6.2502 -0.0232 14 6 5.6649 7.2700 -0.0287 15 8 6.8222 6.9072 -0.0277 16 7 5.3711 8.5854 -0.0349 17 6 6.4497 9.5769 -0.0397 18 6 5.8579 10.9629 -0.0455 19 1 4.7857 11.0922 -0.0460 20 6 6.6854 12.0657 -0.0513 21 7 7.9911 11.9081 -0.0512 22 14 5.9519 13.7836 -0.0592 23 1 5.7581 14.2456 1.3387 24 1 6.8723 14.7115 -0.7642 25 1 4.6421 13.7594 -0.7586 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.6789 -0.7196 -0.0011 32 1 6.1009 -1.1201 -0.0032 33 1 7.6751 0.7701 -0.0041 34 1 6.8406 3.0785 -0.0029 35 1 3.9392 6.3785 -0.9131 36 1 3.9413 6.3867 0.8669 37 1 4.4455 8.8756 -0.0354 38 1 7.0650 9.4486 0.8508 39 1 7.0647 9.4403 -0.9291 40 1 8.5732 12.6840 -0.0556 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007559809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:00 Heat of formation + Delta-G solvation = -118.440226 kcal Electronic energy + Delta-G solvation = -23448.577625 eV Core-core repulsion = 19739.841104 eV Total energy + Delta-G solvation = -3708.736522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84214 -40.52538 -39.62053 -37.57173 -36.19915 -34.43084 -33.94342 -32.61922 -32.13152 -30.73178 -28.55028 -25.79723 -24.78104 -24.18972 -23.80130 -21.90370 -21.67066 -19.58310 -19.00556 -18.52040 -17.86265 -17.85967 -17.36576 -16.98355 -16.47139 -16.25873 -16.18985 -15.83779 -15.74886 -15.38788 -15.14190 -14.68127 -14.66726 -14.10948 -13.96348 -13.83935 -13.56168 -13.25306 -13.16909 -12.94830 -12.72396 -12.60380 -12.39556 -12.23873 -12.21644 -11.97748 -11.95644 -11.50929 -10.96075 -10.82589 -10.81040 -10.59039 -10.17887 -9.95020 -8.49913 -8.30304 -6.46911 -0.48953 0.16813 0.54499 1.13163 1.38137 1.43827 1.45813 1.49487 1.52675 1.57418 2.32910 2.54501 2.62189 3.04815 3.51095 3.66074 3.76341 3.99678 4.00841 4.01019 4.02186 4.03651 4.27818 4.32860 4.46018 4.53725 4.80749 4.86706 4.89308 5.00607 5.05558 5.12122 5.20684 5.21855 5.25244 5.38954 5.40261 5.61592 5.76056 5.80993 6.48884 6.61652 6.75782 7.18816 7.33443 8.81781 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.002207 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.386990 B =12683.735405 C =13850.062505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.149 4.149 3 S -0.068 6.068 4 C -0.047 4.047 5 C -0.150 4.150 6 C -0.048 4.048 7 C -0.140 4.140 8 C -0.052 4.052 9 C -0.150 4.150 10 C 0.499 3.501 11 O -0.501 6.501 12 O -0.341 6.341 13 C 0.061 3.939 14 C 0.502 3.498 15 O -0.582 6.582 16 N -0.698 5.698 17 C 0.267 3.733 18 C -0.557 4.557 19 H 0.086 0.914 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.986 3.014 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.256 1.256 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.412 0.588 38 H -0.007 1.007 39 H -0.007 1.007 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.836 -29.235 0.111 31.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.296 4.296 3 S 0.180 5.820 4 C -0.162 4.162 5 C -0.174 4.174 6 C -0.068 4.068 7 C -0.160 4.160 8 C -0.072 4.072 9 C -0.158 4.158 10 C 0.345 3.655 11 O -0.391 6.391 12 O -0.257 6.257 13 C -0.015 4.015 14 C 0.287 3.713 15 O -0.462 6.462 16 N -0.350 5.350 17 C 0.145 3.855 18 C -0.595 4.595 19 H 0.104 0.896 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.809 3.191 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.180 1.180 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.180 0.820 32 H 0.191 0.809 33 H 0.178 0.822 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.249 0.751 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.047 -28.260 0.107 31.127 hybrid contribution 0.574 0.474 0.007 0.745 sum -12.473 -27.786 0.114 30.457 Atomic orbital electron populations 1.21498 0.91285 1.03933 1.02685 1.24068 1.01505 0.97441 1.06618 1.87294 0.95579 1.09976 1.89178 1.22295 0.97893 0.95872 1.00120 1.21547 0.97768 0.93987 1.04093 1.21809 0.91913 1.01114 0.91973 1.21544 1.02201 0.91092 1.01202 1.21623 0.92910 0.99441 0.93192 1.18707 0.94964 0.87727 1.14407 1.21475 0.84385 0.86491 0.73148 1.90768 1.16507 1.85136 1.46736 1.86595 1.39894 1.15022 1.84210 1.22749 0.93801 0.77889 1.07090 1.20606 0.89904 0.83968 0.76808 1.90675 1.23131 1.80963 1.51462 1.46045 1.11883 1.04556 1.72490 1.18640 0.85903 0.86375 0.94627 1.21606 0.94581 0.90225 1.53087 0.89633 1.26062 0.95049 1.04649 0.93839 1.70135 1.04415 1.32425 1.49798 0.85140 0.78468 0.76927 0.78583 1.19611 1.20960 1.17973 0.92264 0.92274 0.88753 0.88104 0.88099 0.82039 0.80947 0.82227 0.84853 0.85881 0.85887 0.75118 0.98923 0.98899 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.92 71.98 0.71 -0.64 16 2 C -0.15 -1.73 4.89 71.98 0.35 -1.38 16 3 S -0.07 -1.49 18.97 -56.49 -1.07 -2.56 16 4 C -0.05 -1.03 6.16 23.01 0.14 -0.89 16 5 C -0.15 -2.11 9.17 22.38 0.21 -1.90 16 6 C -0.05 -0.54 10.02 22.29 0.22 -0.31 16 7 C -0.14 -2.08 10.02 22.25 0.22 -1.86 16 8 C -0.05 -1.17 9.61 22.53 0.22 -0.96 16 9 C -0.15 -3.95 5.89 -19.98 -0.12 -4.06 16 10 C 0.50 15.54 7.87 70.19 0.55 16.09 16 11 O -0.50 -16.34 13.56 19.74 0.27 -16.08 16 12 O -0.34 -11.59 9.00 -50.52 -0.45 -12.05 16 13 C 0.06 1.92 5.95 71.24 0.42 2.34 16 14 C 0.50 20.80 7.91 87.66 0.69 21.49 16 15 O -0.58 -29.83 16.50 15.78 0.26 -29.57 16 16 N -0.70 -29.57 5.55 -466.77 -2.59 -32.16 16 17 C 0.27 14.59 5.43 85.63 0.46 15.06 16 18 C -0.56 -30.13 9.28 25.60 0.24 -29.89 16 19 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 20 C 0.00 0.21 5.46 84.65 0.46 0.67 16 21 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 22 Si 0.99 42.24 29.54 68.60 2.03 44.27 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.90 7.54 -2.39 -0.02 0.88 16 30 H 0.10 0.90 7.54 -2.39 -0.02 0.88 16 31 H 0.16 1.30 5.50 -2.91 -0.02 1.29 16 32 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 33 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.13 3.32 7.61 -2.91 -0.02 3.29 16 35 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.41 14.16 8.32 -92.71 -0.77 13.39 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -77.57 360.82 3.81 -73.76 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.30 Total: 16.16 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 4.79 Total: 13.76 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.30 Total: -87.69 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: 0.07 Total: -57.69 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -1.07 Total: -2.56 kcal Total: -77.57 3.81 -73.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007559809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.683 kcal (2) G-P(sol) polarization free energy of solvation -77.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds