Wall clock time and date at job start Tue Mar 31 2020 13:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.42890 * 109.47435 * 120.00065 * 2 1 3 5 5 C 1.35004 * 117.00164 * 270.00000 * 4 2 1 6 6 O 1.21721 * 119.99881 * 0.02562 * 5 4 2 7 7 C 1.41219 * 120.00140 * 179.97438 * 5 4 2 8 8 C 1.35778 * 120.00152 * 180.02562 * 7 5 4 9 9 C 1.41499 * 120.00078 * 180.02562 * 8 7 5 10 10 C 1.37095 * 125.47895 * 179.72060 * 9 8 7 11 11 C 1.37398 * 113.21973 * 179.79684 * 10 9 8 12 12 C 1.33882 * 115.13280 * 0.49591 * 11 10 9 13 13 S 1.70605 * 111.01886 * 359.72527 * 12 11 10 14 14 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 15 15 O 1.21283 * 119.99478 * 244.99823 * 14 2 1 16 16 N 1.34773 * 120.00430 * 64.99170 * 14 2 1 17 17 C 1.46506 * 119.99969 * 0.02562 * 16 14 2 18 18 C 1.46499 * 120.00036 * 179.72648 * 16 14 2 19 19 C 1.50703 * 109.47126 * 270.27831 * 18 16 14 20 20 H 1.08002 * 119.99820 * 359.97438 * 19 18 16 21 21 C 1.37876 * 119.99889 * 180.02562 * 19 18 16 22 22 N 1.31518 * 120.00192 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46980 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47015 * 119.99649 * 23 21 19 26 26 H 1.48496 * 109.47036 * 240.00093 * 23 21 19 27 27 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 28 28 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 30 30 H 1.08003 * 120.00205 * 0.02562 * 7 5 4 31 31 H 1.08000 * 119.99968 * 0.02562 * 8 7 5 32 32 H 1.08000 * 123.38699 * 359.96791 * 10 9 8 33 33 H 1.08007 * 122.43444 * 180.21879 * 11 10 9 34 34 H 1.08002 * 124.49240 * 179.69877 * 12 11 10 35 35 H 1.08999 * 109.46892 * 269.72362 * 17 16 14 36 36 H 1.09000 * 109.46803 * 29.71536 * 17 16 14 37 37 H 1.09000 * 109.47214 * 149.72329 * 17 16 14 38 38 H 1.08994 * 109.47173 * 30.28203 * 18 16 14 39 39 H 1.09005 * 109.47077 * 150.28374 * 18 16 14 40 40 H 0.96995 * 119.99689 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2107 0.0792 2.2686 6 8 1.9893 1.2757 2.2379 7 6 2.6804 -0.5217 3.4571 8 6 2.8854 0.2353 4.5655 9 6 3.3565 -0.3667 5.7562 10 6 3.6066 0.2886 6.9341 11 6 4.0532 -0.5431 7.9325 12 6 4.1764 -1.8307 7.5872 13 16 3.7224 -2.0743 5.9608 14 6 2.0324 -0.7103 -1.2306 15 8 2.6530 -1.7465 -1.1216 16 7 1.7918 -0.1940 -2.4521 17 6 1.0425 1.0580 -2.5836 18 6 2.2854 -0.8814 -3.6479 19 6 3.6681 -0.3821 -3.9797 20 1 4.1325 0.3722 -3.3618 21 6 4.3397 -0.8874 -5.0726 22 7 3.7739 -1.8055 -5.8254 23 14 6.0533 -0.2679 -5.4843 24 1 6.4616 0.7563 -4.4897 25 1 7.0114 -1.4018 -5.4482 26 1 6.0492 0.3337 -6.8419 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.8765 -1.5834 3.4845 31 1 2.6889 1.2969 4.5383 32 1 3.4640 1.3511 7.0650 33 1 4.2921 -0.1834 8.9225 34 1 4.5183 -2.6117 8.2503 35 1 -0.0212 0.8370 -2.6727 36 1 1.2123 1.6773 -1.7029 37 1 1.3786 1.5909 -3.4731 38 1 2.3218 -1.9546 -3.4611 39 1 1.6162 -0.6807 -4.4846 40 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007838446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:23 Heat of formation + Delta-G solvation = -62.620871 kcal Electronic energy + Delta-G solvation = -23892.474812 eV Core-core repulsion = 20186.158799 eV Total energy + Delta-G solvation = -3706.316013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78145 -39.01023 -38.41095 -36.59609 -34.88879 -34.42355 -32.85359 -31.55087 -29.46770 -27.68626 -26.21864 -25.84031 -24.39824 -23.30925 -22.01616 -20.34059 -19.98255 -18.85729 -17.98459 -17.33988 -16.63403 -16.51077 -16.15711 -15.98859 -15.54535 -15.18243 -14.57090 -14.24570 -13.84561 -13.79378 -13.47301 -13.43584 -13.12791 -12.94355 -12.69140 -12.36712 -12.31521 -12.14799 -12.08600 -11.65167 -11.38450 -11.18834 -11.14359 -10.89090 -10.86501 -10.64664 -10.63737 -10.51729 -10.16083 -9.61940 -9.00343 -8.86266 -8.51417 -8.44245 -7.70135 -6.05011 -4.09724 -0.29879 1.13267 1.31621 1.56744 2.32289 2.69417 3.03620 3.30161 3.30843 3.38286 3.43398 3.95588 4.44484 4.53553 4.60348 4.77898 4.84620 4.89145 4.99475 5.03925 5.14001 5.17100 5.29691 5.38869 5.53142 5.66597 5.71338 5.74021 5.76399 5.87710 5.96539 6.01489 6.04578 6.24915 6.48978 7.00508 7.40868 7.48759 7.78264 7.91576 8.21407 8.32004 8.86973 9.02103 9.55376 11.03159 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.002464 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.828699 B =11362.896912 C =12220.659869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.068 3.932 3 H 0.104 0.896 4 O -0.318 6.318 5 C 0.503 3.497 6 O -0.518 6.518 7 C -0.205 4.205 8 C 0.037 3.963 9 C -0.210 4.210 10 C -0.091 4.091 11 C -0.148 4.148 12 C -0.242 4.242 13 S 0.216 5.784 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.596 5.596 17 C 0.077 3.923 18 C 0.246 3.754 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.283 1.283 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 4.180 25.672 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.122 0.878 4 O -0.233 6.233 5 C 0.351 3.649 6 O -0.411 6.411 7 C -0.227 4.227 8 C 0.017 3.983 9 C -0.328 4.328 10 C -0.123 4.123 11 C -0.179 4.179 12 C -0.380 4.380 13 S 0.485 5.515 14 C 0.293 3.707 15 O -0.395 6.395 16 N -0.330 5.330 17 C -0.067 4.067 18 C 0.128 3.872 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.209 1.209 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.762 2.525 24.590 25.174 hybrid contribution 1.069 1.688 0.688 2.113 sum -3.693 4.213 25.278 25.891 Atomic orbital electron populations 1.22307 0.92600 1.03940 1.03938 1.22220 0.95695 0.97849 0.83316 0.87820 1.86336 1.76590 1.40897 1.19431 1.19719 0.75188 0.85307 0.84639 1.90872 1.49454 1.15952 1.84800 1.21238 1.08192 1.01677 0.91558 1.20755 0.88583 1.00295 0.88700 1.22625 1.13494 0.98039 0.98612 1.21005 0.98905 1.01250 0.91108 1.20011 1.04116 0.92516 1.01267 1.25420 1.08818 1.01699 1.02060 1.83417 1.58364 1.05061 1.04621 1.19803 0.81117 0.85939 0.83857 1.90701 1.39644 1.23431 1.85765 1.48068 1.53972 1.24007 1.06934 1.21840 0.95347 0.86753 1.02789 1.19352 0.94241 0.93867 0.79788 1.21470 1.00907 1.23028 1.11198 0.92379 1.24938 0.98241 0.94903 0.96034 1.69941 1.38016 1.28236 1.17136 0.86428 0.84152 0.78761 0.78017 1.19784 1.20833 1.20930 0.89427 0.91033 0.91358 0.84482 0.83282 0.83223 0.84032 0.81554 0.93141 0.92317 0.90349 0.93647 0.94599 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.25 37.16 0.34 -1.97 16 2 C 0.07 1.19 2.12 -27.88 -0.06 1.13 16 3 H 0.10 1.74 6.10 -51.93 -0.32 1.42 16 4 O -0.32 -5.64 9.29 -48.08 -0.45 -6.09 16 5 C 0.50 7.72 7.64 31.86 0.24 7.96 16 6 O -0.52 -8.48 15.34 -19.44 -0.30 -8.78 16 7 C -0.21 -2.48 9.44 -39.33 -0.37 -2.85 16 8 C 0.04 0.37 9.36 -39.22 -0.37 0.00 16 9 C -0.21 -1.84 6.21 -38.76 -0.24 -2.08 16 10 C -0.09 -0.65 10.25 -40.30 -0.41 -1.07 16 11 C -0.15 -0.96 10.14 -41.42 -0.42 -1.38 16 12 C -0.24 -1.58 10.92 29.20 0.32 -1.26 16 13 S 0.22 1.70 21.76 -107.50 -2.34 -0.64 16 14 C 0.51 11.22 7.10 -10.99 -0.08 11.14 16 15 O -0.52 -13.83 16.09 -14.31 -0.23 -14.06 16 16 N -0.60 -12.90 2.86 -182.95 -0.52 -13.42 16 17 C 0.08 1.22 8.92 59.85 0.53 1.75 16 18 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 19 C -0.53 -15.13 9.38 -34.44 -0.32 -15.45 16 20 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 23 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 H 0.09 1.05 5.12 -51.93 -0.27 0.78 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.14 1.53 7.04 -52.48 -0.37 1.16 16 31 H 0.15 1.38 7.45 -52.49 -0.39 0.99 16 32 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 34 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.05 0.67 7.04 -51.93 -0.37 0.30 16 36 H 0.06 0.80 6.06 -51.93 -0.31 0.49 16 37 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 38 H 0.05 1.34 7.43 -51.93 -0.39 0.96 16 39 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -35.38 359.81 -8.56 -43.94 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.91 Total: -1.56 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.96 Total: 4.05 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.21 Total: -39.36 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.97 Total: -28.92 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.34 Total: -0.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.38 -8.56 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007838446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.677 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds