Wall clock time and date at job start Tue Mar 31 2020 13:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 N 1.46504 * 109.47025 * 119.99875 * 2 1 3 5 5 C 1.34772 * 120.00278 * 155.00252 * 4 2 1 6 6 O 1.21283 * 119.99573 * 359.97438 * 5 4 2 7 7 C 1.50691 * 120.00383 * 180.02562 * 5 4 2 8 8 S 1.80998 * 109.47677 * 179.97438 * 7 5 4 9 9 C 1.76197 * 100.00438 * 179.97438 * 8 7 5 10 10 C 1.39042 * 120.18591 * 0.02562 * 9 8 7 11 11 C 1.37907 * 120.06220 * 179.97438 * 10 9 8 12 12 C 1.38678 * 120.45773 * 359.97438 * 11 10 9 13 13 C 1.37705 * 120.38200 * 359.97438 * 12 11 10 14 14 C 1.39844 * 119.92125 * 0.02735 * 13 12 11 15 15 C 1.47187 * 120.22071 * 179.97438 * 14 13 12 16 16 O 1.21570 * 119.99633 * 179.97438 * 15 14 13 17 17 O 1.34798 * 120.00252 * 359.97438 * 15 14 13 18 18 C 1.34862 * 116.99914 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.38789 * 119.99749 * 180.02562 * 18 17 15 21 21 N 1.31428 * 120.00333 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99683 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47205 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46732 * 120.00134 * 22 20 18 25 25 H 1.48500 * 109.47243 * 239.99998 * 22 20 18 26 26 H 1.09000 * 109.46971 * 300.00551 * 1 2 3 27 27 H 1.09001 * 109.46345 * 60.00116 * 1 2 3 28 28 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47289 * 239.99772 * 2 1 3 30 30 H 1.08998 * 109.46758 * 299.99749 * 3 2 1 31 31 H 1.08994 * 109.47136 * 59.99678 * 3 2 1 32 32 H 1.09004 * 109.47178 * 180.02562 * 3 2 1 33 33 H 0.97004 * 119.99527 * 334.99638 * 4 2 1 34 34 H 1.08999 * 109.47527 * 59.99365 * 7 5 4 35 35 H 1.09006 * 109.47041 * 299.99333 * 7 5 4 36 36 H 1.07994 * 119.97328 * 359.95947 * 10 9 8 37 37 H 1.08002 * 119.77410 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.81383 * 180.02562 * 12 11 10 39 39 H 1.08003 * 120.04054 * 179.74585 * 13 12 11 40 40 H 0.96998 * 119.99913 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1945 6 8 3.9355 -1.1994 0.2025 7 6 3.7424 -1.9700 2.4248 8 16 5.4014 -2.6217 2.1103 9 6 5.7330 -3.3785 3.6665 10 6 4.7856 -3.3309 4.6831 11 6 5.0476 -3.9245 5.9000 12 6 6.2535 -4.5728 6.1208 13 6 7.2045 -4.6321 5.1267 14 6 6.9556 -4.0355 3.8866 15 6 7.9677 -4.0944 2.8196 16 8 7.7467 -3.5748 1.7430 17 8 9.1395 -4.7245 3.0361 18 6 10.0229 -4.7415 2.0172 19 1 9.7761 -4.2640 1.0806 20 6 11.2487 -5.3736 2.1722 21 7 11.5485 -5.9560 3.3116 22 14 12.4721 -5.3977 0.7607 23 1 11.8980 -4.6777 -0.4043 24 1 13.7294 -4.7302 1.1840 25 1 12.7618 -6.8037 0.3806 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.4621 -0.7386 1.9895 34 1 3.0698 -2.7921 2.6694 35 1 3.7789 -1.2698 3.2594 36 1 3.8438 -2.8283 4.5198 37 1 4.3085 -3.8843 6.6865 38 1 6.4476 -5.0345 7.0776 39 1 8.1435 -5.1348 5.3060 40 1 12.4051 -6.3981 3.4197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012423507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:15 Heat of formation + Delta-G solvation = -87.459719 kcal Electronic energy + Delta-G solvation = -23907.312210 eV Core-core repulsion = 20199.919104 eV Total energy + Delta-G solvation = -3707.393106 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86956 -39.41092 -38.01964 -36.18593 -35.18466 -32.34718 -32.20928 -31.12688 -30.82218 -29.10562 -27.56090 -25.67973 -23.55455 -22.42157 -22.04103 -20.81465 -20.16495 -17.88670 -17.75547 -16.97902 -16.86853 -16.22619 -15.65766 -15.35974 -14.87400 -14.64039 -14.53894 -14.44002 -14.20815 -14.04369 -13.74423 -13.47128 -13.14614 -12.85934 -12.64759 -12.56682 -12.46586 -12.33488 -11.72462 -11.70328 -11.33059 -11.27833 -11.23288 -10.94710 -10.49400 -10.41208 -10.13280 -9.99590 -9.81948 -9.48144 -9.32680 -8.72097 -8.67780 -8.60502 -7.00769 -6.46813 -4.08148 1.15020 1.50437 1.72895 2.50438 2.68937 3.02629 3.12065 3.19956 3.28142 3.46047 3.92457 4.26134 4.44035 4.51725 4.66155 4.72002 4.90641 4.94040 4.95619 5.13943 5.14178 5.21172 5.22270 5.35114 5.41124 5.43828 5.58446 5.66498 5.77454 5.84622 5.96272 6.00579 6.26347 6.29733 6.54357 6.68911 6.89551 7.10026 7.23804 7.38126 7.91175 8.05851 8.67274 9.02258 9.79884 10.70831 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003105 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.433953 B = 9016.856504 C =10765.133199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.728 5.728 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.220 4.220 8 S 0.094 5.906 9 C -0.076 4.076 10 C -0.154 4.154 11 C -0.087 4.087 12 C -0.143 4.143 13 C -0.051 4.051 14 C -0.079 4.079 15 C 0.424 3.576 16 O -0.525 6.525 17 O -0.201 6.201 18 C -0.371 4.371 19 H 0.100 0.900 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.944 3.056 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.399 0.601 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.400 8.869 3.224 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.382 5.382 5 C 0.320 3.680 6 O -0.389 6.389 7 C -0.370 4.370 8 S 0.340 5.660 9 C -0.190 4.190 10 C -0.179 4.179 11 C -0.107 4.107 12 C -0.164 4.164 13 C -0.071 4.071 14 C -0.087 4.087 15 C 0.273 3.727 16 O -0.424 6.424 17 O -0.108 6.108 18 C -0.447 4.447 19 H 0.118 0.882 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.769 3.231 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.233 0.767 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.144 9.090 1.129 22.129 hybrid contribution -0.499 -0.203 1.228 1.341 sum -20.644 8.886 2.357 22.598 Atomic orbital electron populations 1.22074 0.94120 1.02638 1.02893 1.20954 0.93866 0.93129 0.88941 1.22197 1.02492 0.95671 1.01961 1.46052 1.17782 1.57500 1.16886 1.19765 0.81350 0.78276 0.88622 1.90780 1.55457 1.58325 1.34356 1.24398 1.07186 1.04622 1.00758 1.88309 1.07424 1.62357 1.07954 1.22427 0.96190 1.00701 0.99729 1.20961 0.98772 1.04406 0.93725 1.21092 0.96928 0.96447 0.96275 1.21088 0.94149 1.01624 0.99529 1.21597 0.99560 0.94877 0.91065 1.19012 0.92636 1.02322 0.94755 1.20634 0.83706 0.81420 0.86961 1.90559 1.77906 1.47554 1.26345 1.83901 1.22548 1.62273 1.42097 1.21403 0.94245 1.35879 0.93151 0.88223 1.25384 0.97107 0.95557 0.98326 1.69987 1.22983 1.32690 1.23891 0.85579 0.79238 0.78406 0.79905 1.18726 1.20096 1.20091 0.92105 0.90891 0.91940 0.89277 0.91633 0.92544 0.91806 0.76711 0.87186 0.87188 0.85771 0.85951 0.85597 0.83710 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.38 37.16 0.35 -0.50 16 2 C 0.14 1.14 3.18 -67.93 -0.22 0.92 16 3 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 4 N -0.73 -6.47 5.08 -53.81 -0.27 -6.74 16 5 C 0.54 7.03 7.81 -10.99 -0.09 6.95 16 6 O -0.51 -9.24 15.52 5.55 0.09 -9.15 16 7 C -0.22 -2.67 4.65 36.00 0.17 -2.51 16 8 S 0.09 1.77 18.11 -107.50 -1.95 -0.18 16 9 C -0.08 -1.38 6.16 -38.42 -0.24 -1.62 16 10 C -0.15 -2.12 9.17 -39.40 -0.36 -2.48 16 11 C -0.09 -1.10 10.02 -39.54 -0.40 -1.49 16 12 C -0.14 -2.03 10.02 -39.61 -0.40 -2.42 16 13 C -0.05 -0.94 9.61 -39.18 -0.38 -1.32 16 14 C -0.08 -1.68 5.89 -104.80 -0.62 -2.30 16 15 C 0.42 11.14 7.81 34.36 0.27 11.41 16 16 O -0.52 -14.63 13.02 -19.32 -0.25 -14.88 16 17 O -0.20 -5.85 8.99 -21.84 -0.20 -6.05 16 18 C -0.37 -11.06 9.65 30.94 0.30 -10.76 16 19 H 0.10 3.01 6.86 -52.49 -0.36 2.65 16 20 C 0.04 1.15 5.50 -17.52 -0.10 1.06 16 21 N -0.86 -24.91 13.67 55.49 0.76 -24.15 16 22 Si 0.94 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 2.24 8.60 -40.82 -0.35 1.89 16 34 H 0.11 1.07 7.54 -51.92 -0.39 0.68 16 35 H 0.11 1.07 7.54 -51.91 -0.39 0.68 16 36 H 0.12 1.28 5.50 -52.49 -0.29 0.99 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.15 2.80 7.61 -52.48 -0.40 2.40 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -36.06 358.11 -7.89 -43.96 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.09 Total: 1.45 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.35 Total: -6.08 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.49 Total: -30.89 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.36 Total: -30.08 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.95 Total: -0.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.06 -7.89 -43.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012423507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.505 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds