Wall clock time and date at job start Tue Mar 31 2020 13:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 N 1.46504 * 109.47025 * 119.99875 * 2 1 3 5 5 C 1.34772 * 120.00278 * 155.00252 * 4 2 1 6 6 O 1.21283 * 119.99573 * 359.97438 * 5 4 2 7 7 C 1.50691 * 120.00383 * 180.02562 * 5 4 2 8 8 S 1.80998 * 109.47677 * 179.97438 * 7 5 4 9 9 C 1.76197 * 100.00438 * 179.97438 * 8 7 5 10 10 C 1.39042 * 120.18591 * 0.02562 * 9 8 7 11 11 C 1.37907 * 120.06220 * 179.97438 * 10 9 8 12 12 C 1.38678 * 120.45773 * 359.97438 * 11 10 9 13 13 C 1.37705 * 120.38200 * 359.97438 * 12 11 10 14 14 C 1.39844 * 119.92125 * 0.02735 * 13 12 11 15 15 C 1.47187 * 120.22071 * 179.97438 * 14 13 12 16 16 O 1.21570 * 119.99633 * 179.97438 * 15 14 13 17 17 O 1.34798 * 120.00252 * 359.97438 * 15 14 13 18 18 C 1.34862 * 116.99914 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.38789 * 119.99749 * 180.02562 * 18 17 15 21 21 N 1.31428 * 120.00333 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99683 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47205 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46732 * 120.00134 * 22 20 18 25 25 H 1.48500 * 109.47243 * 239.99998 * 22 20 18 26 26 H 1.09000 * 109.46971 * 300.00551 * 1 2 3 27 27 H 1.09001 * 109.46345 * 60.00116 * 1 2 3 28 28 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47289 * 239.99772 * 2 1 3 30 30 H 1.08998 * 109.46758 * 299.99749 * 3 2 1 31 31 H 1.08994 * 109.47136 * 59.99678 * 3 2 1 32 32 H 1.09004 * 109.47178 * 180.02562 * 3 2 1 33 33 H 0.97004 * 119.99527 * 334.99638 * 4 2 1 34 34 H 1.08999 * 109.47527 * 59.99365 * 7 5 4 35 35 H 1.09006 * 109.47041 * 299.99333 * 7 5 4 36 36 H 1.07994 * 119.97328 * 359.95947 * 10 9 8 37 37 H 1.08002 * 119.77410 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.81383 * 180.02562 * 12 11 10 39 39 H 1.08003 * 120.04054 * 179.74585 * 13 12 11 40 40 H 0.96998 * 119.99913 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1945 6 8 3.9355 -1.1994 0.2025 7 6 3.7424 -1.9700 2.4248 8 16 5.4014 -2.6217 2.1103 9 6 5.7330 -3.3785 3.6665 10 6 4.7856 -3.3309 4.6831 11 6 5.0476 -3.9245 5.9000 12 6 6.2535 -4.5728 6.1208 13 6 7.2045 -4.6321 5.1267 14 6 6.9556 -4.0355 3.8866 15 6 7.9677 -4.0944 2.8196 16 8 7.7467 -3.5748 1.7430 17 8 9.1395 -4.7245 3.0361 18 6 10.0229 -4.7415 2.0172 19 1 9.7761 -4.2640 1.0806 20 6 11.2487 -5.3736 2.1722 21 7 11.5485 -5.9560 3.3116 22 14 12.4721 -5.3977 0.7607 23 1 11.8980 -4.6777 -0.4043 24 1 13.7294 -4.7302 1.1840 25 1 12.7618 -6.8037 0.3806 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.4621 -0.7386 1.9895 34 1 3.0698 -2.7921 2.6694 35 1 3.7789 -1.2698 3.2594 36 1 3.8438 -2.8283 4.5198 37 1 4.3085 -3.8843 6.6865 38 1 6.4476 -5.0345 7.0776 39 1 8.1435 -5.1348 5.3060 40 1 12.4051 -6.3981 3.4197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012423507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:14 Heat of formation + Delta-G solvation = -112.794953 kcal Electronic energy + Delta-G solvation = -23908.410829 eV Core-core repulsion = 20199.919104 eV Total energy + Delta-G solvation = -3708.491724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24763 -40.84460 -39.54641 -37.27040 -37.02349 -34.36875 -33.29974 -32.37185 -32.12277 -30.07801 -28.11154 -27.74987 -25.15066 -23.68006 -22.97835 -21.93960 -21.51307 -19.91426 -19.32602 -18.39945 -18.02853 -17.26992 -17.02107 -16.70716 -16.53828 -16.38219 -16.00169 -15.76459 -15.31752 -15.23710 -14.93345 -14.48417 -14.35063 -14.15867 -13.93054 -13.66777 -13.49559 -13.19428 -13.11959 -13.06328 -12.64227 -12.42866 -12.32349 -12.26176 -12.20217 -11.99935 -11.93517 -11.66730 -11.07861 -10.76383 -10.71802 -10.37269 -10.19312 -10.03055 -8.59634 -8.43544 -6.35524 -0.25172 0.26828 0.46217 1.30455 1.33301 1.44956 1.50125 1.50598 1.80180 2.09219 2.16318 2.72428 2.72661 3.00161 3.68800 3.81088 3.95739 4.02951 4.11065 4.15101 4.19754 4.25093 4.30534 4.41635 4.50360 4.71231 4.71725 4.74343 4.92236 4.97737 5.01245 5.11268 5.24842 5.26198 5.31360 5.35367 5.47757 5.49795 5.78399 5.90401 6.46678 6.58339 6.85194 7.18460 7.69490 8.61424 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003105 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.433953 B = 9016.856504 C =10765.133199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.130 3.870 3 C -0.161 4.161 4 N -0.704 5.704 5 C 0.529 3.471 6 O -0.575 6.575 7 C -0.187 4.187 8 S -0.020 6.020 9 C -0.070 4.070 10 C -0.142 4.142 11 C -0.056 4.056 12 C -0.132 4.132 13 C -0.066 4.066 14 C -0.129 4.129 15 C 0.422 3.578 16 O -0.553 6.553 17 O -0.232 6.232 18 C -0.418 4.418 19 H 0.078 0.922 20 C -0.002 4.002 21 N -0.897 5.897 22 Si 1.018 2.982 23 H -0.269 1.269 24 H -0.256 1.256 25 H -0.256 1.256 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.420 0.580 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.172 0.828 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.118 0.882 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.491 9.669 6.060 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 C -0.219 4.219 4 N -0.358 5.358 5 C 0.315 3.685 6 O -0.454 6.454 7 C -0.337 4.337 8 S 0.226 5.774 9 C -0.185 4.185 10 C -0.166 4.166 11 C -0.075 4.075 12 C -0.153 4.153 13 C -0.086 4.086 14 C -0.137 4.137 15 C 0.271 3.729 16 O -0.452 6.452 17 O -0.141 6.141 18 C -0.493 4.493 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.534 5.534 22 Si 0.836 3.164 23 H -0.193 1.193 24 H -0.180 1.180 25 H -0.180 1.180 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.258 0.742 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.190 0.810 37 H 0.201 0.799 38 H 0.181 0.819 39 H 0.136 0.864 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.295 9.898 4.016 26.539 hybrid contribution 0.407 -0.328 0.483 0.711 sum -23.888 9.570 4.499 26.124 Atomic orbital electron populations 1.22012 0.90956 1.03317 1.04404 1.21064 0.96153 0.92614 0.87598 1.22165 1.00183 0.95973 1.03616 1.45887 1.16352 1.55707 1.17899 1.20022 0.82088 0.78268 0.88146 1.90775 1.57384 1.60728 1.36514 1.24242 1.02113 1.06098 1.01252 1.88676 1.13919 1.63875 1.10919 1.22454 0.95975 1.00218 0.99823 1.21581 0.99047 1.03395 0.92585 1.21788 0.96593 0.92430 0.96698 1.21517 0.93553 1.00793 0.99416 1.21525 1.00174 0.95381 0.91486 1.18909 0.93222 1.06980 0.94589 1.21815 0.83609 0.79314 0.88132 1.90551 1.78708 1.47950 1.27994 1.83924 1.23853 1.64095 1.42206 1.21483 0.96047 1.38551 0.93246 0.90422 1.26538 0.98154 0.94132 1.01423 1.70057 1.24111 1.33415 1.25839 0.84576 0.76591 0.79386 0.75805 1.19314 1.18027 1.18017 0.90045 0.89945 0.91669 0.92288 0.90283 0.90635 0.95308 0.74197 0.83517 0.83569 0.81036 0.79926 0.81898 0.86379 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.38 71.98 0.68 -0.43 16 2 C 0.13 2.00 3.18 44.99 0.14 2.14 16 3 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 4 N -0.70 -10.68 5.08 -442.54 -2.25 -12.93 16 5 C 0.53 13.35 7.81 87.65 0.68 14.03 16 6 O -0.57 -21.65 15.52 -3.04 -0.05 -21.70 16 7 C -0.19 -4.01 4.65 71.23 0.33 -3.67 16 8 S -0.02 -0.78 18.11 -56.49 -1.02 -1.80 16 9 C -0.07 -2.51 6.16 23.02 0.14 -2.37 16 10 C -0.14 -3.19 9.17 22.38 0.21 -2.98 16 11 C -0.06 -1.03 10.02 22.30 0.22 -0.80 16 12 C -0.13 -3.26 10.02 22.25 0.22 -3.03 16 13 C -0.07 -2.46 9.61 22.53 0.22 -2.25 16 14 C -0.13 -5.76 5.89 -19.98 -0.12 -5.87 16 15 C 0.42 24.22 7.81 70.17 0.55 24.77 16 16 O -0.55 -33.91 13.02 19.61 0.26 -33.66 16 17 O -0.23 -14.81 8.99 10.58 0.10 -14.71 16 18 C -0.42 -27.08 9.65 67.95 0.66 -26.43 16 19 H 0.08 5.19 6.86 -2.91 -0.02 5.17 16 20 C 0.00 -0.11 5.50 84.89 0.47 0.36 16 21 N -0.90 -54.53 13.67 21.63 0.30 -54.23 16 22 Si 1.02 45.83 29.55 68.60 2.03 47.86 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 26 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 1.29 7.58 -2.39 -0.02 1.27 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.42 2.77 8.60 -92.71 -0.80 1.97 16 34 H 0.15 2.09 7.54 -2.40 -0.02 2.08 16 35 H 0.15 2.10 7.54 -2.39 -0.02 2.08 16 36 H 0.17 2.20 5.50 -2.91 -0.02 2.18 16 37 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 39 H 0.12 4.95 7.61 -2.91 -0.02 4.93 16 40 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -93.47 358.11 4.71 -88.76 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.28 Total: 10.76 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.08 Total: -8.35 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.95 Total: -67.16 kcal Atomic # 8 Polarization: -70.37 SS G_CDS: 0.30 Total: -70.07 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -1.02 Total: -1.80 kcal Total: -93.47 4.71 -88.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012423507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.038 kcal (2) G-P(sol) polarization free energy of solvation -93.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds