Wall clock time and date at job start Tue Mar 31 2020 14:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34709 * 116.99945 * 2 1 4 4 O 1.21473 * 119.99806 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39625 * 120.15414 * 180.02562 * 5 3 2 7 7 C 1.37946 * 119.84978 * 180.02562 * 6 5 3 8 8 C 1.38362 * 120.14976 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.84580 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46743 * 90.00390 * 9 8 7 11 11 C 1.46506 * 120.00098 * 90.00098 * 10 9 8 12 12 C 1.34771 * 120.00308 * 269.99953 * 10 9 8 13 13 O 1.21283 * 120.00089 * 359.97438 * 12 10 9 14 14 C 1.50702 * 120.00335 * 180.02562 * 12 10 9 15 15 S 1.81004 * 109.47123 * 179.97438 * 14 12 10 16 16 C 1.76199 * 99.99720 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00414 * 0.02562 * 16 15 14 18 18 C 1.38801 * 119.99695 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00004 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46951 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47152 * 119.99850 * 20 18 16 23 23 H 1.48490 * 109.47374 * 240.00146 * 20 18 16 24 24 C 1.38365 * 120.30252 * 0.23763 * 8 7 6 25 25 C 1.37937 * 120.15188 * 359.48414 * 24 8 7 26 26 H 1.08994 * 109.46910 * 299.99637 * 1 2 3 27 27 H 1.08999 * 109.46864 * 60.00151 * 1 2 3 28 28 H 1.09006 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.07290 * 0.02562 * 6 5 3 30 30 H 1.08005 * 119.91987 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47445 * 330.00724 * 9 8 7 32 32 H 1.09000 * 109.47150 * 210.00333 * 9 8 7 33 33 H 1.09001 * 109.47060 * 270.00243 * 11 10 9 34 34 H 1.09004 * 109.47073 * 29.99732 * 11 10 9 35 35 H 1.09000 * 109.47212 * 149.99814 * 11 10 9 36 36 H 1.09000 * 109.47188 * 299.99755 * 14 12 10 37 37 H 1.08996 * 109.47042 * 59.99980 * 14 12 10 38 38 H 0.97002 * 120.00170 * 179.97438 * 19 18 16 39 39 H 1.08000 * 119.92286 * 179.71797 * 24 8 7 40 40 H 1.07997 * 120.07822 * 180.25586 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.1760 2.5200 0.0011 7 6 5.5539 2.5849 0.0011 8 6 6.3044 1.4225 0.0000 9 6 7.8093 1.5015 -0.0005 10 7 8.2975 1.5260 1.3805 11 6 8.6080 0.2713 2.0702 12 6 8.4609 2.7028 2.0167 13 8 8.2044 3.7416 1.4457 14 6 8.9637 2.7282 3.4372 15 16 9.0759 4.4425 4.0070 16 6 9.6701 4.1820 5.6452 17 1 9.8492 3.1784 6.0015 18 6 9.9088 5.2669 6.4775 19 7 9.6909 6.4902 6.0431 20 14 10.5380 4.9908 8.2146 21 1 10.6995 3.5346 8.4569 22 1 11.8493 5.6679 8.3795 23 1 9.5661 5.5502 9.1879 24 6 5.6795 0.1881 -0.0060 25 6 4.3024 0.1086 -0.0002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5913 3.4281 0.0015 30 1 6.0480 3.5454 0.0011 31 1 8.1254 2.4096 -0.5138 32 1 8.2186 0.6321 -0.5152 33 1 7.7176 -0.0909 2.5840 34 1 8.9352 -0.4717 1.3428 35 1 9.4023 0.4429 2.7967 36 1 8.2742 2.1768 4.0765 37 1 9.9495 2.2655 3.4820 38 1 9.8574 7.2483 6.6249 39 1 6.2713 -0.7153 -0.0114 40 1 3.8159 -0.8556 -0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024864089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:26 Heat of formation + Delta-G solvation = -90.553643 kcal Electronic energy + Delta-G solvation = -23776.616818 eV Core-core repulsion = 20069.089550 eV Total energy + Delta-G solvation = -3707.527269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80796 -39.85383 -38.67956 -36.67694 -35.44891 -32.54158 -32.43807 -31.21724 -29.65087 -28.24789 -27.20579 -25.81273 -25.37849 -23.11566 -22.78574 -20.93862 -19.30507 -18.27084 -17.66886 -17.35721 -16.65983 -16.60754 -16.22473 -15.93839 -15.10988 -14.93918 -14.81461 -14.70484 -14.01777 -13.79364 -13.72957 -13.55056 -13.21522 -13.03848 -12.76098 -12.55775 -12.47485 -12.41386 -12.15241 -11.88358 -11.76074 -11.18252 -11.10671 -11.07953 -11.02870 -10.78268 -10.75969 -9.81270 -9.56522 -9.18208 -9.08370 -9.04273 -8.64712 -8.23990 -6.51302 -6.22803 -3.93356 0.42968 1.19373 2.26503 2.40217 2.93966 2.99930 3.20863 3.25252 3.30291 3.52276 3.73014 4.19073 4.39703 4.52296 4.65654 4.75072 4.79149 4.85581 4.87006 5.06814 5.09382 5.12554 5.16719 5.20022 5.35383 5.41124 5.51102 5.58006 5.65593 5.68889 5.85272 5.87621 5.93919 6.04121 6.11242 6.22412 6.37324 6.52452 6.66159 7.44378 7.47725 7.58908 8.34286 8.49053 9.22722 10.84652 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.002593 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.574732 B =10797.422142 C =11565.415969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.509 3.491 4 O -0.505 6.505 5 C -0.130 4.130 6 C -0.053 4.053 7 C -0.104 4.104 8 C -0.066 4.066 9 C 0.151 3.849 10 N -0.621 5.621 11 C 0.080 3.920 12 C 0.535 3.465 13 O -0.512 6.512 14 C -0.150 4.150 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.122 4.122 25 C -0.067 4.067 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.130 0.870 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 -18.557 -14.091 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.355 3.645 4 O -0.394 6.394 5 C -0.132 4.132 6 C -0.072 4.072 7 C -0.122 4.122 8 C -0.068 4.068 9 C 0.028 3.972 10 N -0.356 5.356 11 C -0.064 4.064 12 C 0.323 3.677 13 O -0.386 6.386 14 C -0.300 4.300 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.141 4.141 25 C -0.085 4.085 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.148 0.852 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.202 -16.534 -14.887 24.910 hybrid contribution 0.366 -1.436 1.913 2.420 sum -10.836 -17.970 -12.975 24.672 Atomic orbital electron populations 1.23287 0.75942 1.03751 1.02739 1.86536 1.23598 1.32746 1.84439 1.21292 0.89245 0.81396 0.72611 1.90845 1.66801 1.36025 1.45725 1.19090 0.88686 0.95246 1.10154 1.21329 0.94736 0.96685 0.94416 1.21301 0.92945 0.99496 0.98503 1.20659 0.96897 0.93268 0.95944 1.20399 0.88648 1.04315 0.83846 1.47896 1.67288 1.06873 1.13580 1.21809 1.01214 0.85507 0.97832 1.20378 0.76676 0.82626 0.88042 1.90675 1.49089 1.31698 1.67138 1.23558 1.03460 1.08382 0.94638 1.85390 1.86540 0.97143 1.14393 1.22889 1.51099 0.95645 0.98602 0.90906 1.24997 0.95113 0.94444 0.99060 1.70027 1.45660 0.98016 1.36544 0.86118 0.78503 0.78413 0.82471 1.19622 1.20561 1.20561 1.21018 0.94168 0.97379 1.01509 1.21374 0.93799 0.97701 0.95640 0.91722 0.91811 0.87949 0.84403 0.83887 0.88505 0.89494 0.92746 0.91272 0.90450 0.89297 0.89210 0.92226 0.85226 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.62 9.82 -40.52 -0.40 -4.02 16 3 C 0.51 6.33 7.90 34.61 0.27 6.61 16 4 O -0.51 -7.54 16.14 -19.25 -0.31 -7.86 16 5 C -0.13 -1.55 5.87 -104.98 -0.62 -2.16 16 6 C -0.05 -0.68 9.60 -39.17 -0.38 -1.05 16 7 C -0.10 -1.34 9.68 -39.64 -0.38 -1.72 16 8 C -0.07 -0.74 5.47 -104.53 -0.57 -1.31 16 9 C 0.15 1.62 5.57 -5.19 -0.03 1.59 16 10 N -0.62 -8.06 2.86 -182.95 -0.52 -8.58 16 11 C 0.08 0.75 10.29 59.85 0.62 1.37 16 12 C 0.53 9.66 7.69 -10.99 -0.08 9.58 16 13 O -0.51 -10.94 14.95 5.55 0.08 -10.85 16 14 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.53 -15.10 9.50 30.94 0.29 -14.80 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 20 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.12 -1.12 9.68 -39.64 -0.38 -1.50 16 25 C -0.07 -0.65 9.62 -39.17 -0.38 -1.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.14 1.74 7.65 -52.48 -0.40 1.34 16 30 H 0.14 2.02 7.56 -52.48 -0.40 1.62 16 31 H 0.10 1.17 7.36 -51.93 -0.38 0.79 16 32 H 0.09 0.64 7.83 -51.93 -0.41 0.24 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.44 7.89 -51.93 -0.41 0.04 16 35 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 36 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 37 H 0.09 1.64 7.40 -51.92 -0.38 1.25 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.14 1.04 7.61 -52.49 -0.40 0.64 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -35.72 364.64 -7.85 -43.56 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.19 Total: -0.92 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.50 Total: -3.93 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.21 Total: -33.93 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.63 Total: -22.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.72 -7.85 -43.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024864089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.989 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds