Wall clock time and date at job start Tue Mar 31 2020 13:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47206 * 2 1 4 4 O 1.45196 * 109.47432 * 180.02562 * 3 2 1 5 5 C 1.34756 * 117.00488 * 180.02562 * 4 3 2 6 6 O 1.21504 * 119.99561 * 0.02562 * 5 4 3 7 7 C 1.47454 * 120.00090 * 179.97438 * 5 4 3 8 8 C 1.39816 * 120.08214 * 0.25201 * 7 5 4 9 9 C 1.37641 * 119.91949 * 180.25500 * 8 7 5 10 10 C 1.39148 * 120.08369 * 359.49167 * 9 8 7 11 11 N 1.39407 * 119.92300 * 180.27862 * 10 9 8 12 12 C 1.34776 * 119.99911 * 144.85118 * 11 10 9 13 13 O 1.21282 * 120.00053 * 4.57867 * 12 11 10 14 14 C 1.50703 * 119.99957 * 184.58341 * 12 11 10 15 15 S 1.81003 * 109.46811 * 179.97438 * 14 12 11 16 16 C 1.76210 * 99.99725 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99582 * 359.97438 * 16 15 14 18 18 C 1.38792 * 119.99976 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00136 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46702 * 60.00036 * 20 18 16 22 22 H 1.48492 * 109.47421 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47159 * 300.00142 * 20 18 16 24 24 C 1.39155 * 120.15143 * 0.25921 * 10 9 8 25 25 C 1.37644 * 120.08300 * 359.97438 * 24 10 9 26 26 H 1.09000 * 109.47132 * 59.99600 * 1 2 3 27 27 H 1.08998 * 109.47456 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47231 * 300.00085 * 1 2 3 29 29 H 1.09000 * 109.47037 * 240.00326 * 2 1 3 30 30 H 1.09000 * 109.47595 * 120.00137 * 2 1 3 31 31 H 1.09000 * 109.47299 * 60.00516 * 3 2 1 32 32 H 1.09000 * 109.47401 * 300.00235 * 3 2 1 33 33 H 1.08006 * 120.03579 * 0.02633 * 8 7 5 34 34 H 1.08005 * 119.95627 * 179.77278 * 9 8 7 35 35 H 0.96997 * 120.00144 * 324.85303 * 11 10 9 36 36 H 1.09006 * 109.46783 * 299.99599 * 14 12 11 37 37 H 1.08993 * 109.47349 * 59.99941 * 14 12 11 38 38 H 0.97004 * 120.00126 * 179.97438 * 19 18 16 39 39 H 1.08003 * 119.95425 * 180.02562 * 24 10 9 40 40 H 1.08001 * 120.04112 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4919 1.4425 -0.0006 5 6 4.1038 2.6432 -0.0002 6 8 3.4420 3.6622 0.0012 7 6 5.5763 2.7203 -0.0002 8 6 6.3394 1.5488 -0.0060 9 6 7.7137 1.6247 -0.0006 10 6 8.3438 2.8653 -0.0002 11 7 9.7360 2.9383 -0.0006 12 6 10.3587 3.9270 -0.6723 13 8 9.7085 4.8001 -1.2067 14 6 11.8631 3.9474 -0.7593 15 16 12.3923 5.3874 -1.7199 16 6 14.1397 5.1681 -1.6623 17 1 14.5610 4.3251 -1.1349 18 6 14.9746 6.0788 -2.2948 19 7 14.4610 7.1066 -2.9371 20 14 16.8271 5.8468 -2.2332 21 1 17.1836 4.5443 -2.8509 22 1 17.4888 6.9461 -2.9806 23 1 17.2816 5.8652 -0.8195 24 6 7.5875 4.0334 0.0004 25 6 6.2127 3.9651 -0.0001 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.8510 0.5855 -0.0109 34 1 8.3038 0.7201 -0.0014 35 1 10.2564 2.2774 0.4824 36 1 12.2843 4.0050 0.2444 37 1 12.2112 3.0374 -1.2478 38 1 15.0445 7.7433 -3.3788 39 1 8.0798 4.9946 0.0003 40 1 5.6264 4.8721 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035249134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:15 Heat of formation + Delta-G solvation = -104.481383 kcal Electronic energy + Delta-G solvation = -22937.799053 eV Core-core repulsion = 19229.667832 eV Total energy + Delta-G solvation = -3708.131221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87305 -40.23410 -38.30278 -36.86363 -34.79788 -34.23192 -32.49976 -31.25007 -30.93049 -28.89674 -27.07123 -25.57334 -24.05583 -23.13061 -21.97365 -21.24266 -20.50387 -18.40947 -17.93965 -17.60701 -17.10014 -16.91482 -16.56064 -15.49016 -15.09382 -15.03874 -14.86612 -14.54661 -14.40888 -14.05944 -13.62248 -13.52687 -13.35323 -13.11823 -12.85651 -12.82531 -12.62251 -12.48000 -12.14197 -11.63364 -11.59274 -11.41217 -11.12261 -11.08727 -10.84297 -10.80376 -10.72001 -10.43828 -9.92287 -9.65094 -9.15989 -9.12560 -8.36364 -8.34480 -6.60221 -6.28504 -4.00891 0.49509 1.22578 2.29519 2.37415 2.74131 2.84807 3.19395 3.21635 3.25322 3.49205 3.65695 4.12921 4.31140 4.44106 4.51838 4.62750 4.75847 4.80868 4.87820 4.98965 5.06992 5.09215 5.11561 5.16331 5.29549 5.35939 5.48389 5.53662 5.59115 5.68535 5.70358 5.82796 5.91383 5.97526 6.11881 6.15673 6.21341 6.35989 6.79977 7.30459 7.52542 7.56361 8.22488 8.27864 9.16785 10.78811 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.048472 B = 0.001807 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.510802 B =15488.526443 C =15823.329410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.066 3.934 4 O -0.356 6.356 5 C 0.514 3.486 6 O -0.511 6.511 7 C -0.158 4.158 8 C -0.040 4.040 9 C -0.167 4.167 10 C 0.198 3.802 11 N -0.680 5.680 12 C 0.532 3.468 13 O -0.490 6.490 14 C -0.155 4.155 15 S -0.055 6.055 16 C -0.539 4.539 17 H 0.074 0.926 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.920 3.080 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.138 4.138 25 C -0.030 4.030 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.413 0.587 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.270 0.730 39 H 0.153 0.847 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.991 -16.506 8.764 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.008 4.008 4 O -0.273 6.273 5 C 0.360 3.640 6 O -0.400 6.400 7 C -0.160 4.160 8 C -0.059 4.059 9 C -0.188 4.188 10 C 0.101 3.899 11 N -0.326 5.326 12 C 0.320 3.680 13 O -0.362 6.362 14 C -0.305 4.305 15 S 0.171 5.829 16 C -0.687 4.687 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.158 4.158 25 C -0.049 4.049 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.250 0.750 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.171 0.829 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.175 -14.567 7.725 27.633 hybrid contribution 2.107 -1.426 0.829 2.676 sum -20.068 -15.992 8.554 27.049 Atomic orbital electron populations 1.21692 0.94130 1.02570 1.02395 1.21519 0.96158 0.94681 1.03805 1.23137 0.76236 0.98615 1.02771 1.86522 1.23381 1.32953 1.84450 1.21138 0.89107 0.81234 0.72527 1.90838 1.66854 1.36029 1.46292 1.19012 0.88709 0.95081 1.13206 1.21164 0.92936 0.97844 0.93959 1.20890 0.94708 0.96358 1.06820 1.18129 0.83403 0.93930 0.94413 1.43709 1.04430 1.31915 1.52566 1.20636 0.90463 0.80257 0.76689 1.90721 1.66756 1.35229 1.43456 1.23558 0.92094 1.08260 1.06593 1.85447 1.05390 1.25755 1.66289 1.22808 0.90921 1.14532 1.40442 0.90834 1.24992 0.99703 0.94388 0.94385 1.69998 1.35979 1.12305 1.31876 0.86205 0.82716 0.78040 0.78443 1.19900 1.20758 1.19886 1.21380 0.92965 0.99306 1.02170 1.21168 0.94044 0.96686 0.93002 0.92256 0.91626 0.92297 0.90683 0.90726 0.91160 0.91129 0.84289 0.84754 0.75037 0.88614 0.88619 0.92010 0.82939 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.15 0.37 -0.28 16 2 C -0.12 -0.70 6.31 -26.73 -0.17 -0.86 16 3 C 0.07 0.54 5.48 37.16 0.20 0.74 16 4 O -0.36 -3.67 9.46 -40.64 -0.38 -4.06 16 5 C 0.51 6.38 7.89 34.48 0.27 6.65 16 6 O -0.51 -7.56 16.13 -19.27 -0.31 -7.87 16 7 C -0.16 -1.88 5.88 -104.97 -0.62 -2.50 16 8 C -0.04 -0.40 9.60 -39.21 -0.38 -0.77 16 9 C -0.17 -1.64 9.94 -39.46 -0.39 -2.04 16 10 C 0.20 2.47 6.30 -83.74 -0.53 1.94 16 11 N -0.68 -8.37 5.31 -9.85 -0.05 -8.42 16 12 C 0.53 9.06 7.68 -10.98 -0.08 8.98 16 13 O -0.49 -10.18 13.28 5.56 0.07 -10.11 16 14 C -0.15 -2.85 6.16 36.01 0.22 -2.63 16 15 S -0.06 -1.43 20.57 -107.50 -2.21 -3.64 16 16 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 17 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 18 C 0.08 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 20 Si 0.92 20.85 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.14 -1.91 8.67 -39.46 -0.34 -2.26 16 25 C -0.03 -0.39 9.58 -39.21 -0.38 -0.76 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.14 1.06 7.60 -52.48 -0.40 0.66 16 34 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.41 3.53 8.82 -40.82 -0.36 3.17 16 36 H 0.10 1.59 8.14 -51.91 -0.42 1.17 16 37 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.15 2.39 6.21 -52.48 -0.33 2.07 16 40 H 0.14 1.73 7.64 -52.49 -0.40 1.33 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -34.16 364.95 -8.55 -42.71 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.26 Total: 1.19 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.62 Total: -6.32 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.68 Total: -33.23 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.62 Total: -22.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.16 -8.55 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035249134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.769 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds