Wall clock time and date at job start Tue Mar 31 2020 13:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47206 * 2 1 4 4 O 1.45196 * 109.47432 * 180.02562 * 3 2 1 5 5 C 1.34756 * 117.00488 * 180.02562 * 4 3 2 6 6 O 1.21504 * 119.99561 * 0.02562 * 5 4 3 7 7 C 1.47454 * 120.00090 * 179.97438 * 5 4 3 8 8 C 1.39816 * 120.08214 * 0.25201 * 7 5 4 9 9 C 1.37641 * 119.91949 * 180.25500 * 8 7 5 10 10 C 1.39148 * 120.08369 * 359.49167 * 9 8 7 11 11 N 1.39407 * 119.92300 * 180.27862 * 10 9 8 12 12 C 1.34776 * 119.99911 * 144.85118 * 11 10 9 13 13 O 1.21282 * 120.00053 * 4.57867 * 12 11 10 14 14 C 1.50703 * 119.99957 * 184.58341 * 12 11 10 15 15 S 1.81003 * 109.46811 * 179.97438 * 14 12 11 16 16 C 1.76210 * 99.99725 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99582 * 359.97438 * 16 15 14 18 18 C 1.38792 * 119.99976 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00136 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46702 * 60.00036 * 20 18 16 22 22 H 1.48492 * 109.47421 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47159 * 300.00142 * 20 18 16 24 24 C 1.39155 * 120.15143 * 0.25921 * 10 9 8 25 25 C 1.37644 * 120.08300 * 359.97438 * 24 10 9 26 26 H 1.09000 * 109.47132 * 59.99600 * 1 2 3 27 27 H 1.08998 * 109.47456 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47231 * 300.00085 * 1 2 3 29 29 H 1.09000 * 109.47037 * 240.00326 * 2 1 3 30 30 H 1.09000 * 109.47595 * 120.00137 * 2 1 3 31 31 H 1.09000 * 109.47299 * 60.00516 * 3 2 1 32 32 H 1.09000 * 109.47401 * 300.00235 * 3 2 1 33 33 H 1.08006 * 120.03579 * 0.02633 * 8 7 5 34 34 H 1.08005 * 119.95627 * 179.77278 * 9 8 7 35 35 H 0.96997 * 120.00144 * 324.85303 * 11 10 9 36 36 H 1.09006 * 109.46783 * 299.99599 * 14 12 11 37 37 H 1.08993 * 109.47349 * 59.99941 * 14 12 11 38 38 H 0.97004 * 120.00126 * 179.97438 * 19 18 16 39 39 H 1.08003 * 119.95425 * 180.02562 * 24 10 9 40 40 H 1.08001 * 120.04112 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4919 1.4425 -0.0006 5 6 4.1038 2.6432 -0.0002 6 8 3.4420 3.6622 0.0012 7 6 5.5763 2.7203 -0.0002 8 6 6.3394 1.5488 -0.0060 9 6 7.7137 1.6247 -0.0006 10 6 8.3438 2.8653 -0.0002 11 7 9.7360 2.9383 -0.0006 12 6 10.3587 3.9270 -0.6723 13 8 9.7085 4.8001 -1.2067 14 6 11.8631 3.9474 -0.7593 15 16 12.3923 5.3874 -1.7199 16 6 14.1397 5.1681 -1.6623 17 1 14.5610 4.3251 -1.1349 18 6 14.9746 6.0788 -2.2948 19 7 14.4610 7.1066 -2.9371 20 14 16.8271 5.8468 -2.2332 21 1 17.1836 4.5443 -2.8509 22 1 17.4888 6.9461 -2.9806 23 1 17.2816 5.8652 -0.8195 24 6 7.5875 4.0334 0.0004 25 6 6.2127 3.9651 -0.0001 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.8510 0.5855 -0.0109 34 1 8.3038 0.7201 -0.0014 35 1 10.2564 2.2774 0.4824 36 1 12.2843 4.0050 0.2444 37 1 12.2112 3.0374 -1.2478 38 1 15.0445 7.7433 -3.3788 39 1 8.0798 4.9946 0.0003 40 1 5.6264 4.8721 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035249134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:14 Heat of formation + Delta-G solvation = -125.323454 kcal Electronic energy + Delta-G solvation = -22938.702833 eV Core-core repulsion = 19229.667832 eV Total energy + Delta-G solvation = -3709.035001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88274 -41.32601 -39.38150 -37.77633 -35.96668 -34.77306 -34.58187 -32.24648 -32.04863 -30.13131 -27.78384 -27.58458 -25.03596 -24.07546 -22.48294 -22.25610 -21.65878 -19.94226 -19.15919 -18.73382 -18.07050 -17.90963 -17.69974 -16.87296 -16.73753 -16.15681 -15.91957 -15.74713 -15.43814 -15.19464 -14.85724 -14.56811 -14.48016 -14.15680 -13.87949 -13.76346 -13.52978 -13.42733 -13.17122 -13.05464 -12.86076 -12.63782 -12.40295 -12.14655 -12.07829 -11.76927 -11.69446 -11.56713 -11.45590 -11.12318 -10.98955 -10.29323 -10.08656 -9.37197 -8.67289 -8.34541 -6.12951 -0.48384 0.32275 1.20356 1.23321 1.44811 1.44984 1.53957 1.54828 1.62350 2.07816 2.27071 2.71619 3.00285 3.26906 3.55863 3.70141 3.87600 3.90841 3.91983 3.93851 4.21325 4.25862 4.27648 4.32045 4.45749 4.52340 4.52399 4.55524 4.75683 4.92239 5.02680 5.11534 5.18046 5.18185 5.21858 5.23923 5.35804 5.42522 5.44246 5.81062 6.19798 6.27763 6.63052 7.01436 7.07272 8.74209 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.048472 B = 0.001807 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.510802 B =15488.526443 C =15823.329410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.059 3.941 4 O -0.349 6.349 5 C 0.516 3.484 6 O -0.543 6.543 7 C -0.164 4.164 8 C -0.027 4.027 9 C -0.146 4.146 10 C 0.182 3.818 11 N -0.654 5.654 12 C 0.535 3.465 13 O -0.536 6.536 14 C -0.129 4.129 15 S -0.150 6.150 16 C -0.547 4.547 17 H 0.086 0.914 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 0.997 3.003 21 H -0.261 1.261 22 H -0.281 1.281 23 H -0.262 1.262 24 C -0.156 4.156 25 C -0.041 4.041 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.435 0.565 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.125 0.875 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.565 -20.406 9.899 30.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.015 4.015 4 O -0.266 6.266 5 C 0.363 3.637 6 O -0.435 6.435 7 C -0.166 4.166 8 C -0.046 4.046 9 C -0.166 4.166 10 C 0.086 3.914 11 N -0.302 5.302 12 C 0.323 3.677 13 O -0.411 6.411 14 C -0.280 4.280 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.105 0.895 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.819 3.181 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.186 1.186 24 C -0.177 4.177 25 C -0.060 4.060 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.189 0.811 34 H 0.193 0.807 35 H 0.275 0.725 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.763 -18.538 8.900 29.942 hybrid contribution 1.785 -0.321 0.541 1.893 sum -19.978 -18.859 9.441 29.050 Atomic orbital electron populations 1.21707 0.93141 1.03407 1.02456 1.21524 0.96862 0.92717 1.04339 1.23416 0.74954 1.00541 1.02558 1.86511 1.24661 1.31559 1.83826 1.21253 0.89301 0.81379 0.71749 1.90825 1.67559 1.37212 1.47896 1.19119 0.88778 0.95460 1.13258 1.21520 0.92904 0.98183 0.91990 1.21240 0.94831 0.96356 1.04156 1.18279 0.83031 0.94559 0.95526 1.43275 1.04645 1.30867 1.51405 1.20367 0.89806 0.80674 0.76834 1.90729 1.67331 1.37298 1.45784 1.23370 0.93239 1.04971 1.06402 1.85650 1.06365 1.31380 1.68860 1.23184 0.91161 1.14852 1.40246 0.89543 1.26109 1.05269 0.93897 0.93788 1.70175 1.37904 1.13532 1.33204 0.85016 0.75824 0.78285 0.78968 1.18590 1.20669 1.18612 1.21208 0.93491 0.99108 1.03844 1.21089 0.93725 0.97281 0.93926 0.92342 0.90369 0.92182 0.90260 0.90028 0.91294 0.91588 0.81109 0.80705 0.72465 0.86253 0.86225 0.92035 0.85718 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.31 16 2 C -0.12 -1.07 6.31 30.59 0.19 -0.88 16 3 C 0.06 0.89 5.48 71.98 0.39 1.28 16 4 O -0.35 -6.62 9.46 -56.66 -0.54 -7.16 16 5 C 0.52 12.50 7.89 70.25 0.55 13.06 16 6 O -0.54 -16.42 16.13 19.82 0.32 -16.10 16 7 C -0.16 -3.74 5.88 -20.09 -0.12 -3.86 16 8 C -0.03 -0.45 9.60 22.51 0.22 -0.23 16 9 C -0.15 -2.29 9.94 22.35 0.22 -2.07 16 10 C 0.18 4.22 6.30 38.38 0.24 4.46 16 11 N -0.65 -14.64 5.31 -303.48 -1.61 -16.25 16 12 C 0.54 17.92 7.68 87.66 0.67 18.60 16 13 O -0.54 -23.08 13.28 -3.04 -0.04 -23.12 16 14 C -0.13 -4.59 6.16 71.24 0.44 -4.15 16 15 S -0.15 -7.94 20.57 -56.49 -1.16 -9.10 16 16 C -0.55 -30.04 9.50 67.95 0.65 -29.39 16 17 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 18 C 0.01 0.79 5.49 84.86 0.47 1.26 16 19 N -0.91 -55.09 13.22 21.65 0.29 -54.80 16 20 Si 1.00 42.43 29.55 68.60 2.03 44.45 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 24 C -0.16 -4.45 8.67 22.35 0.19 -4.26 16 25 C -0.04 -1.10 9.58 22.51 0.22 -0.88 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.17 1.75 7.60 -2.91 -0.02 1.73 16 34 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.43 5.77 8.82 -92.71 -0.82 4.96 16 36 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.12 3.72 8.14 -2.40 -0.02 3.70 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 39 H 0.12 4.25 6.21 -2.91 -0.02 4.23 16 40 H 0.13 3.56 7.64 -2.91 -0.02 3.54 16 Total: -1.00 -78.21 364.95 4.58 -73.63 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.25 Total: 15.82 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.05 Total: -7.37 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -1.33 Total: -71.05 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.26 Total: -46.38 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -78.21 4.58 -73.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035249134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.692 kcal (2) G-P(sol) polarization free energy of solvation -78.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds