Wall clock time and date at job start Tue Mar 31 2020 14:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00301 * 2 1 4 4 C 1.53001 * 109.47022 * 270.00168 * 3 2 1 5 5 C 1.53001 * 109.47261 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47413 * 179.97438 * 5 4 3 7 7 O 1.20833 * 119.99880 * 0.02562 * 6 5 4 8 8 O 1.34229 * 120.00251 * 179.97438 * 6 5 4 9 9 C 1.34775 * 119.99768 * 180.02562 * 2 1 3 10 10 O 1.21612 * 120.00023 * 174.65651 * 9 2 1 11 11 C 1.47427 * 120.00204 * 354.66125 * 9 2 1 12 12 C 1.39685 * 120.21407 * 309.08213 * 11 9 2 13 13 C 1.37803 * 119.93780 * 179.97438 * 12 11 9 14 14 C 1.38653 * 120.38442 * 359.97438 * 13 12 11 15 15 C 1.37911 * 120.43967 * 359.97438 * 14 13 12 16 16 C 1.39119 * 120.05009 * 359.97438 * 15 14 13 17 17 S 1.76196 * 120.19082 * 179.97438 * 16 15 14 18 18 C 1.76202 * 99.99836 * 351.74296 * 17 16 15 19 19 H 1.07996 * 120.00005 * 5.05981 * 18 17 16 20 20 C 1.38805 * 119.99448 * 185.06557 * 18 17 16 21 21 N 1.31546 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99604 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47304 * 89.99909 * 22 20 18 24 24 H 1.48498 * 109.47133 * 209.99710 * 22 20 18 25 25 H 1.48497 * 109.47291 * 329.99930 * 22 20 18 26 26 H 1.08997 * 109.46895 * 274.36665 * 1 2 3 27 27 H 1.09006 * 109.47036 * 34.36597 * 1 2 3 28 28 H 1.09003 * 109.47120 * 154.36995 * 1 2 3 29 29 H 1.09000 * 109.46634 * 29.99701 * 3 2 1 30 30 H 1.08997 * 109.47213 * 150.00002 * 3 2 1 31 31 H 1.09003 * 109.47431 * 300.00143 * 4 3 2 32 32 H 1.09006 * 109.47121 * 60.00063 * 4 3 2 33 33 H 1.08993 * 109.47028 * 300.00114 * 5 4 3 34 34 H 1.09006 * 109.46696 * 60.00177 * 5 4 3 35 35 H 0.96703 * 116.99662 * 179.97438 * 8 6 5 36 36 H 1.08001 * 120.02558 * 0.25943 * 12 11 9 37 37 H 1.07996 * 119.80459 * 179.97438 * 13 12 11 38 38 H 1.07998 * 119.78414 * 179.97438 * 14 13 12 39 39 H 1.07993 * 119.97839 * 179.97438 * 15 14 13 40 40 H 0.97006 * 120.00065 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2171 3.0357 -1.4426 6 6 3.4688 3.4704 -2.8633 7 8 3.0765 2.7902 -3.7817 8 8 4.1279 4.6137 -3.1086 9 6 2.1388 -1.1672 -0.0005 10 8 3.3510 -1.1695 -0.0986 11 6 1.4065 -2.4412 0.1177 12 6 0.4752 -2.6242 1.1426 13 6 -0.2065 -3.8172 1.2475 14 6 0.0256 -4.8397 0.3402 15 6 0.9408 -4.6756 -0.6784 16 6 1.6385 -3.4783 -0.8019 17 16 2.8090 -3.2649 -2.1014 18 6 2.8596 -4.9063 -2.7402 19 1 2.1902 -5.6585 -2.3499 20 6 3.7601 -5.2325 -3.7449 21 7 4.5753 -4.3161 -4.2205 22 14 3.8143 -6.9727 -4.4216 23 1 2.8761 -7.0880 -5.5669 24 1 5.1928 -7.2838 -4.8778 25 1 3.4170 -7.9300 -3.3581 26 1 -0.3633 0.0782 1.0247 27 1 -0.3633 0.8483 -0.5801 28 1 -0.3633 -0.9266 -0.4445 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1383 0.5138 31 1 3.0416 0.9507 -1.9564 32 1 1.5001 1.8407 -1.9563 33 1 2.6277 3.7951 -0.9289 34 1 4.1695 2.9056 -0.9286 35 1 4.2656 4.8506 -4.0360 36 1 0.2863 -1.8297 1.8494 37 1 -0.9257 -3.9565 2.0409 38 1 -0.5138 -5.7708 0.4317 39 1 1.1161 -5.4771 -1.3806 40 1 5.2043 -4.5440 -4.9230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036980220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:29 Heat of formation + Delta-G solvation = -102.656840 kcal Electronic energy + Delta-G solvation = -24468.889916 eV Core-core repulsion = 20760.837813 eV Total energy + Delta-G solvation = -3708.052103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.32778 -39.73870 -37.64432 -36.33838 -35.60912 -33.47818 -32.75832 -30.66356 -30.34903 -27.99207 -26.26629 -25.83783 -23.77097 -22.13458 -21.99955 -20.77617 -19.42230 -18.13182 -17.89775 -16.97668 -16.70787 -16.29862 -16.04772 -15.71821 -15.21715 -15.00446 -14.54051 -14.21638 -14.03118 -13.52144 -13.29498 -13.00958 -12.92397 -12.67318 -12.37760 -12.28459 -12.21214 -11.83700 -11.66910 -11.63174 -11.57871 -11.19583 -11.17523 -11.00444 -10.72541 -10.64108 -10.32851 -9.80048 -9.57923 -9.43096 -8.76412 -8.53185 -8.39164 -8.29097 -6.54444 -6.47566 -4.18701 1.64397 1.99653 2.15566 2.85791 3.08490 3.13289 3.19918 3.23941 3.35443 3.41985 4.02954 4.34946 4.73657 4.80802 4.94511 4.99164 5.01842 5.10862 5.27217 5.31889 5.36889 5.42656 5.51354 5.55601 5.59553 5.68266 5.85211 5.87627 6.08988 6.12594 6.31745 6.35622 6.43494 6.56812 6.76909 6.87933 7.00305 7.11904 7.43503 7.57406 7.66973 7.81304 8.15263 8.64731 8.98754 10.58065 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009985 B = 0.004339 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.413082 B = 6452.200310 C = 8869.712396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.620 5.620 3 C 0.122 3.878 4 C -0.131 4.131 5 C -0.108 4.108 6 C 0.474 3.526 7 O -0.507 6.507 8 O -0.523 6.523 9 C 0.568 3.432 10 O -0.511 6.511 11 C -0.162 4.162 12 C -0.066 4.066 13 C -0.181 4.181 14 C -0.080 4.080 15 C -0.152 4.152 16 C -0.048 4.048 17 S 0.105 5.895 18 C -0.568 4.568 19 H 0.094 0.906 20 C 0.080 3.920 21 N -0.858 5.858 22 Si 0.924 3.076 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.408 0.592 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.033 13.332 8.404 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.354 5.354 3 C -0.001 4.001 4 C -0.170 4.170 5 C -0.146 4.146 6 C 0.316 3.684 7 O -0.394 6.394 8 O -0.335 6.335 9 C 0.356 3.644 10 O -0.385 6.385 11 C -0.176 4.176 12 C -0.086 4.086 13 C -0.205 4.205 14 C -0.101 4.101 15 C -0.178 4.178 16 C -0.167 4.167 17 S 0.366 5.634 18 C -0.715 4.715 19 H 0.112 0.888 20 C -0.131 4.131 21 N -0.491 5.491 22 Si 0.749 3.251 23 H -0.199 1.199 24 H -0.204 1.204 25 H -0.192 1.192 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.267 0.733 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.514 14.048 7.703 17.295 hybrid contribution -0.662 -1.955 -0.687 2.175 sum -7.175 12.093 7.016 15.715 Atomic orbital electron populations 1.21816 0.79628 1.03536 1.01180 1.47740 1.06859 1.05456 1.75386 1.21307 0.97961 0.84964 0.95868 1.21872 1.01354 0.95422 0.98315 1.21279 1.04017 0.99172 0.90119 1.23589 0.73876 0.77712 0.93196 1.90792 1.47962 1.53540 1.47073 1.84527 1.71216 1.41451 1.36315 1.18406 0.87165 0.83359 0.75422 1.90813 1.13584 1.86768 1.47369 1.19127 1.03475 0.94593 1.00451 1.20892 0.94100 0.97254 0.96316 1.20653 1.03690 0.94557 1.01605 1.21075 0.96778 0.97976 0.94308 1.21412 0.98067 0.97971 1.00329 1.22891 0.99778 0.94738 0.99295 1.84016 1.41154 1.14432 1.23808 1.23545 1.25618 0.96903 1.25454 0.88820 1.25115 0.93684 0.99050 0.95219 1.69978 1.19536 1.33831 1.25736 0.86073 0.77938 0.81824 0.79289 1.19860 1.20432 1.19159 0.92943 0.91727 0.90180 0.90702 0.89733 0.89582 0.90914 0.87744 0.87319 0.73293 0.86795 0.86979 0.86968 0.84404 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 9.17 59.85 0.55 1.47 16 2 N -0.62 -9.11 2.87 -182.85 -0.53 -9.63 16 3 C 0.12 1.44 5.39 -4.04 -0.02 1.42 16 4 C -0.13 -1.67 4.83 -26.73 -0.13 -1.80 16 5 C -0.11 -1.02 5.81 -27.89 -0.16 -1.18 16 6 C 0.47 5.63 8.33 36.00 0.30 5.92 16 7 O -0.51 -8.28 16.74 -18.76 -0.31 -8.59 16 8 O -0.52 -4.71 13.42 -39.26 -0.53 -5.23 16 9 C 0.57 11.09 6.60 -12.52 -0.08 11.01 16 10 O -0.51 -11.89 15.48 5.27 0.08 -11.81 16 11 C -0.16 -3.21 4.61 -104.75 -0.48 -3.69 16 12 C -0.07 -1.04 8.01 -39.20 -0.31 -1.36 16 13 C -0.18 -2.74 10.02 -39.59 -0.40 -3.14 16 14 C -0.08 -1.35 10.02 -39.55 -0.40 -1.75 16 15 C -0.15 -3.16 9.25 -39.37 -0.36 -3.53 16 16 C -0.05 -1.11 6.13 -38.39 -0.24 -1.34 16 17 S 0.10 2.82 19.79 -107.50 -2.13 0.70 16 18 C -0.57 -15.79 9.08 30.94 0.28 -15.51 16 19 H 0.09 2.45 4.86 -52.49 -0.26 2.20 16 20 C 0.08 2.22 5.49 -17.46 -0.10 2.13 16 21 N -0.86 -25.10 13.22 55.49 0.73 -24.37 16 22 Si 0.92 20.86 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H 0.05 0.47 7.61 -51.93 -0.40 0.08 16 27 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 28 H 0.08 1.04 6.33 -51.93 -0.33 0.71 16 29 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.08 1.08 7.50 -51.93 -0.39 0.69 16 31 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.41 2.15 9.10 45.56 0.41 2.56 16 36 H 0.11 1.47 7.14 -52.49 -0.37 1.10 16 37 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.14 2.99 4.99 -52.49 -0.26 2.72 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -36.08 355.75 -7.99 -44.07 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.10 Total: 5.01 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.55 Total: -11.34 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.21 Total: -34.00 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.76 Total: -25.63 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.13 Total: 0.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.08 -7.99 -44.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036980220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.590 kcal (2) G-P(sol) polarization free energy of solvation -36.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds