Wall clock time and date at job start Tue Mar 31 2020 14:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00301 * 2 1 4 4 C 1.53001 * 109.47022 * 270.00168 * 3 2 1 5 5 C 1.53001 * 109.47261 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47413 * 179.97438 * 5 4 3 7 7 O 1.20833 * 119.99880 * 0.02562 * 6 5 4 8 8 O 1.34229 * 120.00251 * 179.97438 * 6 5 4 9 9 C 1.34775 * 119.99768 * 180.02562 * 2 1 3 10 10 O 1.21612 * 120.00023 * 174.65651 * 9 2 1 11 11 C 1.47427 * 120.00204 * 354.66125 * 9 2 1 12 12 C 1.39685 * 120.21407 * 309.08213 * 11 9 2 13 13 C 1.37803 * 119.93780 * 179.97438 * 12 11 9 14 14 C 1.38653 * 120.38442 * 359.97438 * 13 12 11 15 15 C 1.37911 * 120.43967 * 359.97438 * 14 13 12 16 16 C 1.39119 * 120.05009 * 359.97438 * 15 14 13 17 17 S 1.76196 * 120.19082 * 179.97438 * 16 15 14 18 18 C 1.76202 * 99.99836 * 351.74296 * 17 16 15 19 19 H 1.07996 * 120.00005 * 5.05981 * 18 17 16 20 20 C 1.38805 * 119.99448 * 185.06557 * 18 17 16 21 21 N 1.31546 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99604 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47304 * 89.99909 * 22 20 18 24 24 H 1.48498 * 109.47133 * 209.99710 * 22 20 18 25 25 H 1.48497 * 109.47291 * 329.99930 * 22 20 18 26 26 H 1.08997 * 109.46895 * 274.36665 * 1 2 3 27 27 H 1.09006 * 109.47036 * 34.36597 * 1 2 3 28 28 H 1.09003 * 109.47120 * 154.36995 * 1 2 3 29 29 H 1.09000 * 109.46634 * 29.99701 * 3 2 1 30 30 H 1.08997 * 109.47213 * 150.00002 * 3 2 1 31 31 H 1.09003 * 109.47431 * 300.00143 * 4 3 2 32 32 H 1.09006 * 109.47121 * 60.00063 * 4 3 2 33 33 H 1.08993 * 109.47028 * 300.00114 * 5 4 3 34 34 H 1.09006 * 109.46696 * 60.00177 * 5 4 3 35 35 H 0.96703 * 116.99662 * 179.97438 * 8 6 5 36 36 H 1.08001 * 120.02558 * 0.25943 * 12 11 9 37 37 H 1.07996 * 119.80459 * 179.97438 * 13 12 11 38 38 H 1.07998 * 119.78414 * 179.97438 * 14 13 12 39 39 H 1.07993 * 119.97839 * 179.97438 * 15 14 13 40 40 H 0.97006 * 120.00065 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2171 3.0357 -1.4426 6 6 3.4688 3.4704 -2.8633 7 8 3.0765 2.7902 -3.7817 8 8 4.1279 4.6137 -3.1086 9 6 2.1388 -1.1672 -0.0005 10 8 3.3510 -1.1695 -0.0986 11 6 1.4065 -2.4412 0.1177 12 6 0.4752 -2.6242 1.1426 13 6 -0.2065 -3.8172 1.2475 14 6 0.0256 -4.8397 0.3402 15 6 0.9408 -4.6756 -0.6784 16 6 1.6385 -3.4783 -0.8019 17 16 2.8090 -3.2649 -2.1014 18 6 2.8596 -4.9063 -2.7402 19 1 2.1902 -5.6585 -2.3499 20 6 3.7601 -5.2325 -3.7449 21 7 4.5753 -4.3161 -4.2205 22 14 3.8143 -6.9727 -4.4216 23 1 2.8761 -7.0880 -5.5669 24 1 5.1928 -7.2838 -4.8778 25 1 3.4170 -7.9300 -3.3581 26 1 -0.3633 0.0782 1.0247 27 1 -0.3633 0.8483 -0.5801 28 1 -0.3633 -0.9266 -0.4445 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1383 0.5138 31 1 3.0416 0.9507 -1.9564 32 1 1.5001 1.8407 -1.9563 33 1 2.6277 3.7951 -0.9289 34 1 4.1695 2.9056 -0.9286 35 1 4.2656 4.8506 -4.0360 36 1 0.2863 -1.8297 1.8494 37 1 -0.9257 -3.9565 2.0409 38 1 -0.5138 -5.7708 0.4317 39 1 1.1161 -5.4771 -1.3806 40 1 5.2043 -4.5440 -4.9230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036980220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:29 Heat of formation + Delta-G solvation = -128.603134 kcal Electronic energy + Delta-G solvation = -24470.015031 eV Core-core repulsion = 20760.837813 eV Total energy + Delta-G solvation = -3709.177219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35895 -41.06797 -39.07764 -37.30272 -36.85058 -34.82420 -34.54499 -32.07367 -31.83413 -28.96782 -27.92079 -27.36259 -25.00070 -23.49444 -23.33873 -21.70639 -20.88756 -19.67242 -19.03726 -18.37089 -17.78512 -17.60250 -17.24153 -17.06893 -16.91993 -16.41657 -15.86075 -15.50059 -15.33020 -14.94855 -14.63735 -14.53655 -14.15315 -13.92949 -13.67139 -13.41372 -13.26253 -13.18215 -13.00956 -12.88560 -12.82834 -12.65047 -12.60940 -12.54570 -12.07699 -11.74267 -11.67002 -11.49389 -11.42651 -11.02802 -10.52210 -10.27648 -9.78143 -9.59744 -8.51996 -8.50015 -6.30106 0.17446 0.52794 1.21910 1.23484 1.35331 1.43761 1.58850 1.72788 2.05544 2.16484 2.30710 2.81781 2.95633 3.15817 3.67585 3.84842 3.97532 4.06578 4.09958 4.25512 4.36289 4.44658 4.54727 4.62074 4.63348 4.66804 4.72745 4.80586 4.85073 4.98236 5.04236 5.12374 5.25468 5.35267 5.48328 5.54096 5.62629 5.67205 5.71760 6.06758 6.15327 6.39026 6.90421 6.98670 7.24582 8.57164 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009985 B = 0.004339 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.413082 B = 6452.200310 C = 8869.712396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.612 5.612 3 C 0.120 3.880 4 C -0.124 4.124 5 C -0.101 4.101 6 C 0.477 3.523 7 O -0.564 6.564 8 O -0.511 6.511 9 C 0.556 3.444 10 O -0.565 6.565 11 C -0.165 4.165 12 C -0.058 4.058 13 C -0.148 4.148 14 C -0.076 4.076 15 C -0.171 4.171 16 C -0.069 4.069 17 S -0.015 6.015 18 C -0.574 4.574 19 H 0.101 0.899 20 C 0.020 3.980 21 N -0.907 5.907 22 Si 1.001 2.999 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.256 1.256 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.425 0.575 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.150 0.850 39 H 0.118 0.882 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 14.075 12.088 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.344 5.344 3 C -0.002 4.002 4 C -0.163 4.163 5 C -0.138 4.138 6 C 0.321 3.679 7 O -0.456 6.456 8 O -0.325 6.325 9 C 0.345 3.655 10 O -0.444 6.444 11 C -0.178 4.178 12 C -0.077 4.077 13 C -0.170 4.170 14 C -0.096 4.096 15 C -0.196 4.196 16 C -0.186 4.186 17 S 0.241 5.759 18 C -0.721 4.721 19 H 0.118 0.882 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.821 3.179 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.179 1.179 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.171 0.829 34 H 0.139 0.861 35 H 0.286 0.714 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.168 0.832 39 H 0.136 0.864 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.093 14.850 11.471 21.307 hybrid contribution 0.176 -2.012 -1.557 2.550 sum -9.916 12.839 9.914 19.012 Atomic orbital electron populations 1.22117 0.77100 1.03696 1.03938 1.47839 1.08508 1.04941 1.73122 1.21579 0.98464 0.84828 0.95282 1.21727 1.00556 0.95626 0.98414 1.21334 1.04989 0.98365 0.89132 1.24079 0.72712 0.77469 0.93602 1.90785 1.50566 1.55313 1.48898 1.84488 1.70116 1.39928 1.37918 1.18609 0.86693 0.84836 0.75388 1.90785 1.15916 1.87634 1.50035 1.19499 1.03730 0.94053 1.00479 1.21391 0.92213 0.99021 0.95124 1.21334 1.02189 0.92643 1.00866 1.21508 0.95194 1.00188 0.92714 1.21435 0.99580 0.96831 1.01768 1.22737 0.99716 0.96990 0.99150 1.84184 1.46596 1.16189 1.28968 1.23806 1.25874 0.96778 1.25642 0.88182 1.26244 0.93103 1.03777 0.95464 1.70150 1.20899 1.36316 1.26873 0.84928 0.78215 0.75965 0.78807 1.18752 1.19874 1.17930 0.88955 0.89253 0.92188 0.84962 0.90919 0.95887 0.91201 0.82888 0.86059 0.71400 0.82449 0.81508 0.83201 0.86409 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 9.17 127.77 1.17 2.57 16 2 N -0.61 -17.25 2.87 -850.65 -2.44 -19.69 16 3 C 0.12 2.66 5.39 86.38 0.47 3.12 16 4 C -0.12 -3.25 4.83 30.60 0.15 -3.10 16 5 C -0.10 -1.78 5.81 29.85 0.17 -1.61 16 6 C 0.48 11.38 8.33 71.23 0.59 11.97 16 7 O -0.56 -19.68 16.74 21.94 0.37 -19.31 16 8 O -0.51 -8.66 13.42 -51.41 -0.69 -9.35 16 9 C 0.56 22.32 6.60 86.66 0.57 22.89 16 10 O -0.56 -28.30 15.48 -4.07 -0.06 -28.36 16 11 C -0.17 -6.51 4.61 -19.95 -0.09 -6.60 16 12 C -0.06 -1.59 8.01 22.52 0.18 -1.41 16 13 C -0.15 -3.61 10.02 22.27 0.22 -3.39 16 14 C -0.08 -2.28 10.02 22.29 0.22 -2.05 16 15 C -0.17 -7.17 9.25 22.40 0.21 -6.96 16 16 C -0.07 -3.30 6.13 23.04 0.14 -3.16 16 17 S -0.02 -0.90 19.79 -56.49 -1.12 -2.02 16 18 C -0.57 -34.26 9.08 67.96 0.62 -33.64 16 19 H 0.10 5.58 4.86 -2.91 -0.01 5.56 16 20 C 0.02 1.14 5.49 84.87 0.47 1.61 16 21 N -0.91 -57.20 13.22 21.64 0.29 -56.91 16 22 Si 1.00 44.75 29.55 68.60 2.03 46.78 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H 0.09 1.09 7.61 -2.39 -0.02 1.07 16 27 H 0.09 1.31 8.11 -2.38 -0.02 1.29 16 28 H 0.06 1.41 6.33 -2.39 -0.02 1.40 16 29 H 0.13 1.46 8.07 -2.39 -0.02 1.44 16 30 H 0.07 1.82 7.50 -2.39 -0.02 1.80 16 31 H 0.02 0.88 8.10 -2.39 -0.02 0.86 16 32 H 0.07 1.82 8.10 -2.38 -0.02 1.80 16 33 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.42 4.19 9.10 -74.06 -0.67 3.51 16 36 H 0.16 3.03 7.14 -2.91 -0.02 3.01 16 37 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 38 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.12 5.34 4.99 -2.91 -0.01 5.32 16 40 H 0.28 16.04 8.31 -92.70 -0.77 15.27 16 Total: -1.00 -92.84 355.75 3.87 -88.97 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.41 Total: 19.65 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 5.09 Total: -19.76 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -2.16 Total: -76.60 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -0.39 Total: -57.02 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -1.12 Total: -2.02 kcal Total: -92.84 3.87 -88.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036980220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.633 kcal (2) G-P(sol) polarization free energy of solvation -92.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds