Wall clock time and date at job start Tue Mar 31 2020 14:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00119 * 2 1 4 4 C 1.53001 * 109.47357 * 89.99776 * 3 2 1 5 5 H 1.08998 * 109.74123 * 304.39357 * 4 3 2 6 6 C 1.53466 * 109.71196 * 183.77631 * 4 3 2 7 7 O 1.43455 * 108.00972 * 180.27251 * 6 4 3 8 8 C 1.36112 * 116.58986 * 46.72785 * 7 6 4 9 9 C 1.38699 * 119.40373 * 162.25565 * 8 7 6 10 10 C 1.38189 * 120.06728 * 179.64977 * 9 8 7 11 11 C 1.38260 * 120.11483 * 359.97438 * 10 9 8 12 12 C 1.38197 * 120.10931 * 0.06139 * 11 10 9 13 13 C 1.38695 * 120.06560 * 0.25656 * 12 11 10 14 14 O 1.36109 * 119.39578 * 179.47282 * 13 12 11 15 15 C 1.34779 * 119.99964 * 179.97438 * 2 1 3 16 16 O 1.21278 * 120.00037 * 179.97438 * 15 2 1 17 17 C 1.50706 * 119.99727 * 0.02562 * 15 2 1 18 18 S 1.81001 * 109.46757 * 179.97438 * 17 15 2 19 19 C 1.76196 * 99.99638 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00361 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99984 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00355 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46989 * 59.99785 * 23 21 19 25 25 H 1.48501 * 109.47089 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47111 * 299.99880 * 23 21 19 27 27 H 1.08999 * 109.46666 * 89.99959 * 1 2 3 28 28 H 1.09000 * 109.47086 * 210.00138 * 1 2 3 29 29 H 1.09006 * 109.46892 * 330.00062 * 1 2 3 30 30 H 1.09001 * 109.47094 * 329.99598 * 3 2 1 31 31 H 1.09007 * 109.47268 * 209.99730 * 3 2 1 32 32 H 1.08995 * 109.71181 * 300.30904 * 6 4 3 33 33 H 1.09006 * 109.70072 * 60.88130 * 6 4 3 34 34 H 1.08005 * 119.96915 * 359.63191 * 9 8 7 35 35 H 1.08001 * 119.94437 * 179.97438 * 10 9 8 36 36 H 1.07997 * 119.94197 * 180.08613 * 11 10 9 37 37 H 1.08002 * 119.96327 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.46843 * 299.99403 * 17 15 2 39 39 H 1.09001 * 109.47224 * 59.99768 * 17 15 2 40 40 H 0.97000 * 120.00350 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5075 1.7669 1.9828 6 6 3.1360 3.0845 1.4499 7 8 3.3632 3.4595 2.8158 8 6 3.9051 2.5097 3.6263 9 6 4.4884 2.8902 4.8258 10 6 5.0363 1.9366 5.6624 11 6 5.0042 0.6009 5.3068 12 6 4.4252 0.2151 4.1127 13 6 3.8794 1.1679 3.2654 14 8 3.3222 0.7739 2.0877 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3853 -2.4723 0.0005 18 16 2.5615 -3.8481 0.0005 19 6 1.4414 -5.2081 0.0013 20 1 0.3761 -5.0304 0.0012 21 6 1.9280 -6.5080 0.0020 22 7 3.2264 -6.7247 0.0017 23 14 0.7406 -7.9500 0.0036 24 1 -0.1150 -7.8880 -1.2086 25 1 1.5067 -9.2222 0.0036 26 1 -0.1139 -7.8863 1.2164 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6085 2.0283 -0.5139 31 1 3.1500 1.1383 -0.5138 32 1 4.0836 3.0266 0.9146 33 1 2.4883 3.8196 0.9721 34 1 4.5147 3.9329 5.1061 35 1 5.4904 2.2351 6.5958 36 1 5.4320 -0.1422 5.9634 37 1 4.4018 -0.8288 3.8371 38 1 0.7584 -2.5298 0.8903 39 1 0.7589 -2.5302 -0.8897 40 1 3.5666 -7.6331 0.0018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041765234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:38 Heat of formation + Delta-G solvation = -72.154251 kcal Electronic energy + Delta-G solvation = -24804.863942 eV Core-core repulsion = 21098.134530 eV Total energy + Delta-G solvation = -3706.729411 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35265 -39.40821 -37.75358 -37.24157 -35.38383 -32.41612 -32.34527 -30.68962 -29.60569 -28.62590 -27.15408 -25.68792 -25.31606 -23.56979 -22.71733 -20.79386 -19.42522 -18.74758 -17.80430 -17.43143 -16.98523 -16.48584 -15.89608 -15.67604 -15.08652 -15.04382 -14.79589 -14.70699 -14.40719 -13.96590 -13.86467 -13.80063 -13.32672 -13.01564 -12.93256 -12.56794 -12.51910 -12.07368 -12.02390 -11.88214 -11.74268 -11.29630 -11.09522 -11.03255 -11.02857 -10.76255 -10.52052 -9.80275 -9.31242 -9.04726 -8.68834 -8.60215 -8.20842 -8.09504 -6.48034 -6.20177 -3.90531 1.24966 1.28232 2.80242 2.99190 3.02324 3.18315 3.23901 3.26424 3.29586 3.59724 3.68962 4.11186 4.21697 4.52057 4.57199 4.58140 4.79336 4.90592 4.97289 5.05237 5.14032 5.14659 5.18028 5.21327 5.36115 5.39373 5.42857 5.55956 5.64274 5.71546 5.84047 5.92331 6.10676 6.14633 6.17582 6.43603 6.53758 6.58365 6.87838 7.41787 7.50596 7.60301 8.36044 8.61001 9.24817 10.87124 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.003229 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.299074 B = 8668.349404 C = 9875.271794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.128 3.872 4 C 0.033 3.967 5 H 0.082 0.918 6 C 0.028 3.972 7 O -0.309 6.309 8 C 0.039 3.961 9 C -0.117 4.117 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.111 4.111 13 C 0.060 3.940 14 O -0.277 6.277 15 C 0.535 3.465 16 O -0.498 6.498 17 C -0.149 4.149 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 21.743 5.660 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C 0.004 3.996 4 C -0.025 4.025 5 H 0.100 0.900 6 C -0.048 4.048 7 O -0.223 6.223 8 C -0.006 4.006 9 C -0.136 4.136 10 C -0.142 4.142 11 C -0.132 4.132 12 C -0.129 4.129 13 C 0.015 3.985 14 O -0.191 6.191 15 C 0.322 3.678 16 O -0.370 6.370 17 C -0.300 4.300 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.327 21.596 5.581 22.345 hybrid contribution -2.416 -0.848 -0.107 2.563 sum -3.743 20.748 5.474 21.782 Atomic orbital electron populations 1.21786 0.79571 1.03160 1.01830 1.47778 1.06669 1.05253 1.76537 1.21304 0.99453 0.86536 0.92339 1.23687 0.93107 0.89051 0.96683 0.89984 1.23622 1.02156 0.97086 0.81939 1.86341 1.78427 1.37108 1.20450 1.18927 1.01080 0.86742 0.93808 1.20377 0.99673 1.00434 0.93077 1.20878 1.00930 0.92653 0.99773 1.20963 0.99861 0.96254 0.96119 1.20640 0.99848 0.99590 0.92844 1.19072 0.99418 0.91457 0.88582 1.86623 1.59552 1.40838 1.32051 1.20296 0.88020 0.84341 0.75123 1.90710 1.13516 1.86463 1.46281 1.23549 1.04551 0.97315 1.04541 1.85397 1.07957 0.93204 1.96683 1.22824 0.94289 0.92294 1.59029 0.91057 1.24981 0.95651 0.98331 0.94555 1.70009 1.11732 1.21732 1.46793 0.86240 0.80217 0.80352 0.78784 1.19961 1.20808 1.19943 0.92506 0.90521 0.91627 0.88374 0.88427 0.90114 0.86172 0.85187 0.85314 0.85070 0.84265 0.89419 0.89408 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.24 59.85 0.61 1.40 16 2 N -0.63 -8.59 2.86 -181.56 -0.52 -9.11 16 3 C 0.13 1.41 5.16 -4.04 -0.02 1.39 16 4 C 0.03 0.39 3.26 -26.49 -0.09 0.30 16 5 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 6 C 0.03 0.27 6.57 37.40 0.25 0.52 16 7 O -0.31 -3.78 10.43 -32.89 -0.34 -4.13 16 8 C 0.04 0.53 6.49 -39.14 -0.25 0.27 16 9 C -0.12 -1.34 9.96 -39.43 -0.39 -1.73 16 10 C -0.12 -1.30 10.04 -39.59 -0.40 -1.70 16 11 C -0.11 -1.33 10.04 -39.59 -0.40 -1.73 16 12 C -0.11 -1.61 9.96 -39.43 -0.39 -2.01 16 13 C 0.06 0.92 6.49 -39.14 -0.25 0.67 16 14 O -0.28 -4.51 8.89 -41.14 -0.37 -4.88 16 15 C 0.53 10.21 7.32 -10.98 -0.08 10.13 16 16 O -0.50 -11.40 14.67 -1.64 -0.02 -11.42 16 17 C -0.15 -3.06 4.71 36.01 0.17 -2.89 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 29 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.10 1.26 7.42 -51.92 -0.39 0.87 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.09 1.69 7.40 -51.92 -0.38 1.31 16 39 H 0.09 1.66 8.11 -51.91 -0.42 1.24 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -36.54 353.20 -8.77 -45.31 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.29 Total: 0.22 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.05 Total: -8.39 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.21 Total: -34.62 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.73 Total: -20.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.54 -8.77 -45.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041765234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.845 kcal (2) G-P(sol) polarization free energy of solvation -36.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds