Wall clock time and date at job start Tue Mar 31 2020 14:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00119 * 2 1 4 4 C 1.53001 * 109.47357 * 89.99776 * 3 2 1 5 5 H 1.08998 * 109.74123 * 304.39357 * 4 3 2 6 6 C 1.53466 * 109.71196 * 183.77631 * 4 3 2 7 7 O 1.43455 * 108.00972 * 180.27251 * 6 4 3 8 8 C 1.36112 * 116.58986 * 46.72785 * 7 6 4 9 9 C 1.38699 * 119.40373 * 162.25565 * 8 7 6 10 10 C 1.38189 * 120.06728 * 179.64977 * 9 8 7 11 11 C 1.38260 * 120.11483 * 359.97438 * 10 9 8 12 12 C 1.38197 * 120.10931 * 0.06139 * 11 10 9 13 13 C 1.38695 * 120.06560 * 0.25656 * 12 11 10 14 14 O 1.36109 * 119.39578 * 179.47282 * 13 12 11 15 15 C 1.34779 * 119.99964 * 179.97438 * 2 1 3 16 16 O 1.21278 * 120.00037 * 179.97438 * 15 2 1 17 17 C 1.50706 * 119.99727 * 0.02562 * 15 2 1 18 18 S 1.81001 * 109.46757 * 179.97438 * 17 15 2 19 19 C 1.76196 * 99.99638 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00361 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99984 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00355 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46989 * 59.99785 * 23 21 19 25 25 H 1.48501 * 109.47089 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47111 * 299.99880 * 23 21 19 27 27 H 1.08999 * 109.46666 * 89.99959 * 1 2 3 28 28 H 1.09000 * 109.47086 * 210.00138 * 1 2 3 29 29 H 1.09006 * 109.46892 * 330.00062 * 1 2 3 30 30 H 1.09001 * 109.47094 * 329.99598 * 3 2 1 31 31 H 1.09007 * 109.47268 * 209.99730 * 3 2 1 32 32 H 1.08995 * 109.71181 * 300.30904 * 6 4 3 33 33 H 1.09006 * 109.70072 * 60.88130 * 6 4 3 34 34 H 1.08005 * 119.96915 * 359.63191 * 9 8 7 35 35 H 1.08001 * 119.94437 * 179.97438 * 10 9 8 36 36 H 1.07997 * 119.94197 * 180.08613 * 11 10 9 37 37 H 1.08002 * 119.96327 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.46843 * 299.99403 * 17 15 2 39 39 H 1.09001 * 109.47224 * 59.99768 * 17 15 2 40 40 H 0.97000 * 120.00350 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5075 1.7669 1.9828 6 6 3.1360 3.0845 1.4499 7 8 3.3632 3.4595 2.8158 8 6 3.9051 2.5097 3.6263 9 6 4.4884 2.8902 4.8258 10 6 5.0363 1.9366 5.6624 11 6 5.0042 0.6009 5.3068 12 6 4.4252 0.2151 4.1127 13 6 3.8794 1.1679 3.2654 14 8 3.3222 0.7739 2.0877 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3853 -2.4723 0.0005 18 16 2.5615 -3.8481 0.0005 19 6 1.4414 -5.2081 0.0013 20 1 0.3761 -5.0304 0.0012 21 6 1.9280 -6.5080 0.0020 22 7 3.2264 -6.7247 0.0017 23 14 0.7406 -7.9500 0.0036 24 1 -0.1150 -7.8880 -1.2086 25 1 1.5067 -9.2222 0.0036 26 1 -0.1139 -7.8863 1.2164 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6085 2.0283 -0.5139 31 1 3.1500 1.1383 -0.5138 32 1 4.0836 3.0266 0.9146 33 1 2.4883 3.8196 0.9721 34 1 4.5147 3.9329 5.1061 35 1 5.4904 2.2351 6.5958 36 1 5.4320 -0.1422 5.9634 37 1 4.4018 -0.8288 3.8371 38 1 0.7584 -2.5298 0.8903 39 1 0.7589 -2.5302 -0.8897 40 1 3.5666 -7.6331 0.0018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041765234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:37 Heat of formation + Delta-G solvation = -96.447561 kcal Electronic energy + Delta-G solvation = -24805.917379 eV Core-core repulsion = 21098.134530 eV Total energy + Delta-G solvation = -3707.782848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29883 -40.73351 -38.71606 -38.22308 -36.62880 -34.59621 -33.35269 -31.63806 -30.94208 -29.72937 -28.06966 -27.70027 -26.50005 -24.56527 -23.69132 -21.69321 -20.79562 -19.75118 -19.58116 -18.55129 -18.01512 -17.74892 -17.09587 -16.89182 -16.81500 -16.17669 -16.14163 -15.78475 -15.48703 -15.40412 -14.92141 -14.82959 -14.58722 -14.40451 -14.27172 -13.75347 -13.49434 -13.32415 -13.17830 -12.96974 -12.88168 -12.79604 -12.75412 -12.59795 -12.17343 -12.00141 -11.75007 -11.47108 -11.13897 -10.83527 -10.27829 -9.73545 -9.65474 -9.06743 -8.68328 -8.35270 -6.13987 0.28197 0.32635 1.24625 1.42834 1.44523 1.54322 1.62644 1.96918 2.17344 2.25492 2.27311 2.73326 2.98410 3.21608 3.28663 3.60078 3.70231 3.71744 3.80758 4.11162 4.18664 4.20543 4.24303 4.31235 4.34143 4.40633 4.44645 4.45239 4.59275 4.65281 4.78230 4.89202 4.92565 5.18974 5.21663 5.39611 5.50225 5.52161 5.70467 5.96344 6.18080 6.25564 6.45236 7.05280 7.20169 8.73777 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.003229 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.299074 B = 8668.349404 C = 9875.271794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.127 3.873 4 C 0.027 3.973 5 H 0.090 0.910 6 C 0.030 3.970 7 O -0.313 6.313 8 C 0.029 3.971 9 C -0.117 4.117 10 C -0.114 4.114 11 C -0.114 4.114 12 C -0.143 4.143 13 C 0.033 3.967 14 O -0.317 6.317 15 C 0.531 3.469 16 O -0.549 6.549 17 C -0.123 4.123 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.262 1.262 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 24.093 6.220 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.348 5.348 3 C 0.004 3.996 4 C -0.030 4.030 5 H 0.107 0.893 6 C -0.045 4.045 7 O -0.227 6.227 8 C -0.016 4.016 9 C -0.135 4.135 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.162 4.162 13 C -0.012 4.012 14 O -0.232 6.232 15 C 0.318 3.682 16 O -0.425 6.425 17 C -0.274 4.274 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.187 1.187 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.174 0.826 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.185 0.815 34 H 0.174 0.826 35 H 0.185 0.815 36 H 0.169 0.831 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.857 24.002 6.137 25.072 hybrid contribution -1.674 -1.418 -0.266 2.210 sum -5.531 22.583 5.871 23.981 Atomic orbital electron populations 1.22128 0.76687 1.04631 1.03706 1.47742 1.08434 1.04458 1.74150 1.21641 0.99244 0.86304 0.92435 1.23927 0.93022 0.89629 0.96443 0.89255 1.23862 1.02687 0.96978 0.80993 1.86325 1.78259 1.36731 1.21416 1.19139 1.01531 0.86152 0.94793 1.20818 0.98509 1.01993 0.92197 1.21312 0.99581 0.91571 1.00712 1.21251 0.99022 0.97802 0.95106 1.20701 1.02202 0.98510 0.94806 1.19315 1.00589 0.92588 0.88733 1.86576 1.60588 1.43187 1.32821 1.20075 0.87361 0.85448 0.75328 1.90694 1.15511 1.87245 1.49073 1.23364 1.02690 0.95387 1.05929 1.85595 1.12649 0.97244 1.97006 1.23164 0.94589 0.92726 1.59089 0.90020 1.26145 0.97628 1.01678 0.93664 1.70185 1.14165 1.22527 1.47889 0.85000 0.77593 0.75835 0.79540 1.18515 1.20311 1.18670 0.90319 0.91446 0.87912 0.82639 0.90823 0.90677 0.81520 0.82573 0.81518 0.83067 0.87115 0.88197 0.87492 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.24 127.77 1.31 2.46 16 2 N -0.61 -16.04 2.86 -846.73 -2.42 -18.46 16 3 C 0.13 2.57 5.16 86.38 0.45 3.02 16 4 C 0.03 0.61 3.26 30.75 0.10 0.72 16 5 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 6 C 0.03 0.52 6.57 72.14 0.47 0.99 16 7 O -0.31 -7.12 10.43 -82.60 -0.86 -7.98 16 8 C 0.03 0.76 6.49 22.56 0.15 0.91 16 9 C -0.12 -2.45 9.96 22.37 0.22 -2.23 16 10 C -0.11 -2.15 10.04 22.26 0.22 -1.92 16 11 C -0.11 -2.66 10.04 22.27 0.22 -2.44 16 12 C -0.14 -4.53 9.96 22.37 0.22 -4.30 16 13 C 0.03 1.05 6.49 22.56 0.15 1.20 16 14 O -0.32 -10.87 8.89 -74.66 -0.66 -11.54 16 15 C 0.53 20.78 7.32 87.66 0.64 21.42 16 16 O -0.55 -26.71 14.67 3.86 0.06 -26.66 16 17 C -0.12 -5.13 4.71 71.24 0.34 -4.79 16 18 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 19 C -0.55 -31.99 9.50 67.95 0.65 -31.34 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.97 13.22 21.65 0.29 -56.68 16 23 Si 1.00 44.12 29.55 68.60 2.03 46.14 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 29 H 0.10 0.99 8.07 -2.38 -0.02 0.97 16 30 H 0.16 1.34 8.07 -2.39 -0.02 1.33 16 31 H 0.07 1.91 7.42 -2.38 -0.02 1.89 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.17 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.10 3.89 7.40 -2.40 -0.02 3.88 16 39 H 0.11 4.01 8.11 -2.40 -0.02 3.99 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -86.80 353.20 3.91 -82.89 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.05 Total: 17.25 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 5.60 Total: -15.06 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -2.13 Total: -75.13 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.47 Total: -46.17 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -86.80 3.91 -82.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041765234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.562 kcal (2) G-P(sol) polarization free energy of solvation -86.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds