Wall clock time and date at job start Tue Mar 31 2020 14:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99795 * 2 1 4 4 C 1.50698 * 109.47269 * 270.00184 * 3 2 1 5 5 C 1.38250 * 119.94408 * 90.00150 * 4 3 2 6 6 C 1.38197 * 120.11470 * 179.75136 * 5 4 3 7 7 C 1.38711 * 120.06659 * 0.24891 * 6 5 4 8 8 C 1.38973 * 119.81785 * 359.93957 * 7 6 5 9 9 C 1.38204 * 119.94370 * 270.25429 * 4 3 2 10 10 O 1.36105 * 120.78446 * 180.21837 * 8 7 6 11 11 C 1.43183 * 116.69352 * 342.70476 * 10 8 7 12 12 C 1.53478 * 108.23250 * 46.26316 * 11 10 8 13 13 O 1.36107 * 119.39787 * 179.80055 * 7 6 5 14 14 C 1.34775 * 120.00092 * 180.02562 * 2 1 3 15 15 O 1.21287 * 119.99890 * 179.97438 * 14 2 1 16 16 C 1.50692 * 120.00161 * 0.02562 * 14 2 1 17 17 S 1.81006 * 109.47441 * 180.02562 * 16 14 2 18 18 C 1.76197 * 99.99898 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00485 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99733 * 179.97438 * 18 17 16 21 21 N 1.31631 * 120.00063 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47327 * 59.99930 * 22 20 18 24 24 H 1.48502 * 109.47095 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46985 * 299.99641 * 22 20 18 26 26 H 1.09002 * 109.47098 * 89.99819 * 1 2 3 27 27 H 1.08996 * 109.47083 * 209.99795 * 1 2 3 28 28 H 1.09000 * 109.47575 * 329.99878 * 1 2 3 29 29 H 1.09006 * 109.46865 * 150.00380 * 3 2 1 30 30 H 1.09001 * 109.47127 * 30.00574 * 3 2 1 31 31 H 1.08002 * 119.94561 * 0.03259 * 5 4 3 32 32 H 1.07998 * 119.97290 * 180.26724 * 6 5 4 33 33 H 1.07991 * 119.96550 * 0.03922 * 9 4 3 34 34 H 1.08996 * 109.71545 * 286.57588 * 11 10 8 35 35 H 1.09004 * 109.71088 * 165.93942 * 11 10 8 36 36 H 1.08997 * 109.70826 * 180.57117 * 12 11 10 37 37 H 1.08996 * 109.74284 * 59.96401 * 12 11 10 38 38 H 1.09008 * 109.47090 * 299.99854 * 16 14 2 39 39 H 1.09003 * 109.47609 * 59.99824 * 16 14 2 40 40 H 0.97003 * 120.00450 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 6 1.5261 2.5020 -2.0713 6 6 1.7552 2.9073 -3.3725 7 6 2.9095 2.5098 -4.0311 8 6 3.8349 1.7042 -3.3785 9 6 3.5981 1.2999 -2.0730 10 8 4.9761 1.3063 -4.0045 11 6 5.0000 1.4198 -5.4316 12 6 4.4571 2.8039 -5.8124 13 8 3.1195 2.9136 -5.3139 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1671 -0.0010 16 6 1.3855 -2.4722 -0.0017 17 16 2.5617 -3.8480 -0.0014 18 6 1.4416 -5.2082 -0.0021 19 1 0.3763 -5.0305 -0.0029 20 6 1.9283 -6.5080 -0.0026 21 7 3.2267 -6.7246 -0.0021 22 14 0.7409 -7.9500 -0.0041 23 1 -0.1135 -7.8865 -1.2169 24 1 1.5071 -9.2221 -0.0038 25 1 -0.1147 -7.8879 1.2081 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.1499 1.1384 0.5138 30 1 1.6084 2.0283 0.5139 31 1 0.6269 2.8132 -1.5603 32 1 1.0351 3.5344 -3.8771 33 1 4.3148 0.6725 -1.5641 34 1 4.3730 0.6449 -5.8726 35 1 6.0234 1.3146 -5.7917 36 1 4.4552 2.9124 -6.8969 37 1 5.0802 3.5792 -5.3666 38 1 0.7584 -2.5306 0.8881 39 1 0.7591 -2.5295 -0.8919 40 1 3.5669 -7.6330 -0.0028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041774300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:20 Heat of formation + Delta-G solvation = -100.334815 kcal Electronic energy + Delta-G solvation = -24463.903195 eV Core-core repulsion = 20755.951783 eV Total energy + Delta-G solvation = -3707.951412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.25923 -40.87660 -38.90100 -38.27183 -36.45531 -34.58836 -33.00545 -31.88660 -30.96510 -29.73318 -27.99564 -27.68946 -26.44099 -25.23966 -23.59628 -21.70989 -20.63822 -19.66886 -19.47095 -18.33656 -18.28375 -17.78742 -17.09767 -16.87976 -16.83481 -16.42919 -16.03237 -15.83046 -15.43814 -15.30807 -15.11795 -14.87048 -14.55439 -14.47391 -14.15089 -13.88713 -13.50580 -13.28371 -13.16767 -12.96234 -12.86457 -12.79083 -12.69224 -12.47251 -12.11954 -12.03911 -11.73233 -11.48395 -11.13072 -10.87772 -10.26835 -9.74215 -9.61007 -9.07695 -8.67614 -8.34554 -6.13198 0.16314 0.29284 1.26912 1.43650 1.46477 1.56120 1.61700 1.99918 2.19836 2.27520 2.28848 2.75371 2.99233 3.25631 3.28392 3.63192 3.74781 3.82636 3.89464 4.05690 4.09933 4.23432 4.29327 4.32976 4.38521 4.47178 4.49796 4.53481 4.59706 4.72277 4.80785 4.89716 5.00498 5.10619 5.15782 5.40700 5.51317 5.57768 5.68137 5.88904 6.19094 6.30959 6.38339 7.06110 7.18917 8.74512 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.003018 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.738648 B = 9276.321169 C =10210.363098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.159 3.841 4 C -0.105 4.105 5 C -0.087 4.087 6 C -0.119 4.119 7 C 0.040 3.960 8 C 0.025 3.975 9 C -0.116 4.116 10 O -0.336 6.336 11 C 0.009 3.991 12 C 0.021 3.979 13 O -0.319 6.319 14 C 0.528 3.472 15 O -0.561 6.561 16 C -0.122 4.122 17 S -0.156 6.156 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.260 1.260 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.174 0.826 32 H 0.161 0.839 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 24.265 -8.225 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.339 5.339 3 C 0.037 3.963 4 C -0.107 4.107 5 C -0.105 4.105 6 C -0.137 4.137 7 C -0.005 4.005 8 C -0.019 4.019 9 C -0.135 4.135 10 O -0.251 6.251 11 C -0.065 4.065 12 C -0.054 4.054 13 O -0.234 6.234 14 C 0.316 3.684 15 O -0.439 6.439 16 C -0.274 4.274 17 S 0.072 5.928 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.185 1.185 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.191 0.809 32 H 0.178 0.822 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.119 0.881 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.042 24.164 -8.263 26.030 hybrid contribution -0.985 -1.380 -0.301 1.722 sum -6.027 22.784 -8.564 25.075 Atomic orbital electron populations 1.22154 0.76617 1.05284 1.03160 1.47896 1.08570 1.04192 1.73244 1.20480 0.98728 0.85118 0.91927 1.20125 0.93724 0.99082 0.97769 1.21168 0.99417 0.96574 0.93333 1.20796 0.96062 1.02065 0.94778 1.19170 0.97320 0.98081 0.85939 1.19099 0.89261 0.99222 0.94353 1.20543 0.99353 1.00661 0.92958 1.86309 1.34048 1.82163 1.22587 1.23971 1.06386 0.98134 0.78034 1.23906 0.81418 0.96659 1.03427 1.86254 1.31239 1.81371 1.24560 1.20161 0.87370 0.85594 0.75320 1.90673 1.15627 1.87442 1.50154 1.23375 1.02661 0.95152 1.06170 1.85602 1.12804 0.97405 1.97021 1.23167 0.94614 0.92658 1.58981 0.89902 1.26153 0.97623 1.01721 0.93698 1.70188 1.14189 1.22507 1.47968 0.84994 0.77581 0.75795 0.79563 1.18661 1.20400 1.18463 0.91757 0.90802 0.86915 0.91274 0.84545 0.80862 0.82191 0.87579 0.91089 0.83266 0.82528 0.89906 0.87169 0.88058 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 10.28 127.77 1.31 2.45 16 2 N -0.61 -15.95 2.86 -851.15 -2.43 -18.38 16 3 C 0.16 3.57 5.57 85.63 0.48 4.05 16 4 C -0.11 -2.59 5.46 -19.87 -0.11 -2.69 16 5 C -0.09 -1.54 9.69 22.26 0.22 -1.32 16 6 C -0.12 -2.35 9.96 22.37 0.22 -2.13 16 7 C 0.04 1.02 6.49 22.56 0.15 1.17 16 8 C 0.03 0.78 6.49 22.56 0.15 0.92 16 9 C -0.12 -3.74 9.62 22.37 0.22 -3.53 16 10 O -0.34 -10.21 10.42 -82.52 -0.86 -11.07 16 11 C 0.01 0.18 7.26 72.14 0.52 0.71 16 12 C 0.02 0.32 7.26 72.14 0.52 0.84 16 13 O -0.32 -7.12 10.42 -82.54 -0.86 -7.98 16 14 C 0.53 20.48 7.69 87.65 0.67 21.15 16 15 O -0.56 -26.91 14.94 -3.05 -0.05 -26.96 16 16 C -0.12 -5.06 4.71 71.23 0.34 -4.73 16 17 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 18 C -0.55 -31.78 9.50 67.95 0.65 -31.14 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -57.03 13.22 21.65 0.29 -56.75 16 22 Si 1.00 44.06 29.55 68.60 2.03 46.08 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.28 6.44 -2.39 -0.02 1.27 16 28 H 0.11 0.93 7.89 -2.39 -0.02 0.91 16 29 H 0.07 1.92 7.37 -2.38 -0.02 1.90 16 30 H 0.14 1.68 7.84 -2.39 -0.02 1.66 16 31 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.11 4.14 7.55 -2.91 -0.02 4.12 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.15 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 4.05 7.40 -2.39 -0.02 4.04 16 39 H 0.10 3.89 8.11 -2.39 -0.02 3.87 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -86.15 354.31 3.81 -82.35 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.05 Total: 15.83 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 5.80 Total: -13.04 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -2.15 Total: -75.13 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.77 Total: -46.02 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -86.15 3.81 -82.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041774300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.989 kcal (2) G-P(sol) polarization free energy of solvation -86.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds