Wall clock time and date at job start Tue Mar 31 2020 14:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47122 * 2 1 4 4 C 1.34232 * 117.00261 * 180.02562 * 3 2 1 5 5 O 1.20817 * 119.99780 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99787 * 179.97438 * 4 3 2 7 7 C 1.53007 * 109.46765 * 179.97438 * 6 4 3 8 8 N 1.46498 * 109.46662 * 180.02562 * 7 6 4 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46991 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47417 * 119.99708 * 22 20 18 25 25 H 1.48506 * 109.47217 * 240.00232 * 22 20 18 26 26 H 1.09001 * 109.46598 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47119 * 299.99575 * 1 2 3 28 28 H 1.09001 * 109.47241 * 59.99830 * 1 2 3 29 29 H 1.09004 * 109.47119 * 240.00425 * 2 1 3 30 30 H 1.09000 * 109.47472 * 119.99678 * 2 1 3 31 31 H 1.09005 * 109.47415 * 59.99846 * 6 4 3 32 32 H 1.08995 * 109.47365 * 299.99733 * 6 4 3 33 33 H 1.09000 * 109.47129 * 60.00417 * 7 6 4 34 34 H 1.09003 * 109.47146 * 300.00030 * 7 6 4 35 35 H 0.97003 * 120.00826 * 359.97438 * 8 7 6 36 36 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 37 37 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 38 38 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 40 40 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 7 6.0084 4.2113 -0.0010 9 6 7.3446 4.3879 -0.0015 10 8 8.0854 3.4235 -0.0023 11 6 7.9081 5.7503 -0.0020 12 6 7.0613 6.8611 -0.0026 13 6 7.5941 8.1320 -0.0037 14 6 8.9684 8.3163 -0.0047 15 6 9.8189 7.2306 -0.0051 16 6 9.3006 5.9397 -0.0041 17 16 10.3837 4.5500 -0.0040 18 6 11.9308 5.3679 0.2018 19 1 11.9594 6.4335 0.3754 20 6 13.1128 4.6428 0.1406 21 7 13.0780 3.3447 -0.0705 22 14 14.7529 5.5098 0.3594 23 1 14.5205 6.9594 0.5827 24 1 15.4639 4.9359 1.5300 25 1 15.5780 5.3235 -0.8612 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.5849 3.4700 0.8888 32 1 3.5844 3.4694 -0.8911 33 1 5.7846 2.3250 -0.8908 34 1 5.7845 2.3257 0.8892 35 1 5.4175 4.9806 -0.0015 36 1 5.9900 6.7242 0.0018 37 1 6.9375 8.9895 -0.0046 38 1 9.3755 9.3167 -0.0051 39 1 10.8881 7.3828 -0.0063 40 1 13.9040 2.8381 -0.1136 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044570803.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:19 Heat of formation + Delta-G solvation = -100.419980 kcal Electronic energy + Delta-G solvation = -23501.582307 eV Core-core repulsion = 19793.627202 eV Total energy + Delta-G solvation = -3707.955105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76382 -39.47657 -37.55463 -36.99368 -35.00230 -32.74881 -32.31234 -31.48197 -30.27887 -29.97212 -25.82284 -25.28279 -23.42132 -22.59165 -21.87884 -21.02375 -20.18574 -18.22605 -17.96734 -17.19466 -17.11763 -16.49098 -15.75216 -15.50909 -15.35026 -15.14035 -14.44245 -14.41135 -13.95408 -13.71003 -13.56900 -13.51859 -13.16320 -12.98090 -12.77776 -12.32255 -12.15391 -12.06736 -11.89061 -11.59465 -11.54921 -11.21178 -11.20478 -10.91087 -10.86332 -10.75198 -10.32170 -9.81295 -9.66459 -9.50785 -8.83880 -8.73249 -8.34053 -8.06199 -6.53561 -6.45594 -4.16340 1.52686 1.95258 2.01454 2.25706 3.11080 3.12503 3.21042 3.42134 3.51149 3.54705 4.06801 4.33111 4.48280 4.55311 4.57502 4.66347 4.75346 4.90226 4.95434 5.08401 5.12889 5.29446 5.34221 5.38413 5.38487 5.57671 5.59685 5.75630 5.85852 6.02733 6.11329 6.15706 6.38207 6.58775 6.66880 6.83895 7.02170 7.13135 7.45120 7.48283 7.58998 7.84947 8.17030 8.76903 9.00595 10.57695 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.002566 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.286266 B =10909.391220 C =12397.511974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.466 3.534 5 O -0.498 6.498 6 C -0.125 4.125 7 C 0.134 3.866 8 N -0.741 5.741 9 C 0.553 3.447 10 O -0.504 6.504 11 C -0.177 4.177 12 C -0.061 4.061 13 C -0.187 4.187 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.058 4.058 17 S 0.186 5.814 18 C -0.596 4.596 19 H 0.092 0.908 20 C 0.082 3.918 21 N -0.857 5.857 22 Si 0.920 3.080 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.395 0.605 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.702 1.664 -0.053 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.308 3.692 5 O -0.385 6.385 6 C -0.163 4.163 7 C 0.010 3.990 8 N -0.397 5.397 9 C 0.342 3.658 10 O -0.380 6.380 11 C -0.193 4.193 12 C -0.081 4.081 13 C -0.212 4.212 14 C -0.099 4.099 15 C -0.178 4.178 16 C -0.178 4.178 17 S 0.451 5.549 18 C -0.742 4.742 19 H 0.109 0.891 20 C -0.129 4.129 21 N -0.490 5.490 22 Si 0.745 3.255 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.230 0.770 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.734 -1.067 -0.178 21.761 hybrid contribution 0.878 2.166 0.223 2.348 sum -20.857 1.099 0.045 20.886 Atomic orbital electron populations 1.21811 0.92564 1.03041 1.03532 1.23051 0.95356 0.80052 1.02848 1.86487 1.24513 1.32616 1.84204 1.23422 0.80621 0.92489 0.72674 1.90741 1.60240 1.43089 1.44427 1.21525 0.96500 0.91745 1.06548 1.20951 0.88962 0.84821 1.04315 1.45756 1.07213 1.07668 1.79016 1.18303 0.81279 0.89429 0.76788 1.90809 1.57689 1.41610 1.47939 1.19068 0.92522 0.91837 1.15851 1.20883 0.97537 0.92350 0.97347 1.20633 0.95035 0.96164 1.09371 1.21089 0.93535 0.98040 0.97232 1.21438 1.00953 0.91249 1.04118 1.23099 0.96731 1.00998 0.96934 1.84803 0.94010 1.01065 1.75042 1.24101 0.94263 0.98824 1.57030 0.89061 1.25114 0.99748 0.94830 0.93159 1.69989 1.29213 1.06134 1.43617 0.86090 0.81352 0.79793 0.78238 1.19145 1.20230 1.20239 0.90187 0.91451 0.91445 0.91077 0.91076 0.86935 0.86931 0.90502 0.90504 0.77008 0.87138 0.87065 0.87020 0.84359 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.36 10.22 -39.26 -0.40 -3.76 16 4 C 0.47 4.97 7.96 36.00 0.29 5.26 16 5 O -0.50 -7.14 15.73 -18.74 -0.29 -7.43 16 6 C -0.13 -1.03 5.93 -27.88 -0.17 -1.19 16 7 C 0.13 1.69 4.96 -4.04 -0.02 1.67 16 8 N -0.74 -10.00 5.51 -61.38 -0.34 -10.34 16 9 C 0.55 10.62 7.75 -12.51 -0.10 10.52 16 10 O -0.50 -11.96 13.77 5.27 0.07 -11.88 16 11 C -0.18 -3.45 5.89 -104.75 -0.62 -4.07 16 12 C -0.06 -0.93 9.53 -39.20 -0.37 -1.30 16 13 C -0.19 -2.80 10.02 -39.58 -0.40 -3.19 16 14 C -0.08 -1.29 10.03 -39.55 -0.40 -1.69 16 15 C -0.15 -3.17 9.22 -39.38 -0.36 -3.53 16 16 C -0.06 -1.31 6.14 -38.39 -0.24 -1.55 16 17 S 0.19 5.02 18.56 -107.50 -2.00 3.03 16 18 C -0.60 -16.48 9.00 30.94 0.28 -16.20 16 19 H 0.09 2.39 4.98 -52.48 -0.26 2.13 16 20 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 21 N -0.86 -24.90 13.22 55.49 0.73 -24.17 16 22 Si 0.92 20.78 29.55 -169.99 -5.02 15.75 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.39 3.86 6.50 -40.82 -0.27 3.60 16 36 H 0.11 1.20 6.40 -52.49 -0.34 0.86 16 37 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.14 3.00 5.04 -52.49 -0.26 2.74 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -34.63 356.81 -8.36 -42.99 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.91 Total: 3.20 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.58 Total: -12.76 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.40 Total: -34.51 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.62 Total: -23.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -2.00 Total: 3.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.63 -8.36 -42.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044570803.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.431 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds