Wall clock time and date at job start Tue Mar 31 2020 14:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47122 * 2 1 4 4 C 1.34232 * 117.00261 * 180.02562 * 3 2 1 5 5 O 1.20817 * 119.99780 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99787 * 179.97438 * 4 3 2 7 7 C 1.53007 * 109.46765 * 179.97438 * 6 4 3 8 8 N 1.46498 * 109.46662 * 180.02562 * 7 6 4 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46991 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47417 * 119.99708 * 22 20 18 25 25 H 1.48506 * 109.47217 * 240.00232 * 22 20 18 26 26 H 1.09001 * 109.46598 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47119 * 299.99575 * 1 2 3 28 28 H 1.09001 * 109.47241 * 59.99830 * 1 2 3 29 29 H 1.09004 * 109.47119 * 240.00425 * 2 1 3 30 30 H 1.09000 * 109.47472 * 119.99678 * 2 1 3 31 31 H 1.09005 * 109.47415 * 59.99846 * 6 4 3 32 32 H 1.08995 * 109.47365 * 299.99733 * 6 4 3 33 33 H 1.09000 * 109.47129 * 60.00417 * 7 6 4 34 34 H 1.09003 * 109.47146 * 300.00030 * 7 6 4 35 35 H 0.97003 * 120.00826 * 359.97438 * 8 7 6 36 36 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 37 37 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 38 38 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 40 40 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 7 6.0084 4.2113 -0.0010 9 6 7.3446 4.3879 -0.0015 10 8 8.0854 3.4235 -0.0023 11 6 7.9081 5.7503 -0.0020 12 6 7.0613 6.8611 -0.0026 13 6 7.5941 8.1320 -0.0037 14 6 8.9684 8.3163 -0.0047 15 6 9.8189 7.2306 -0.0051 16 6 9.3006 5.9397 -0.0041 17 16 10.3837 4.5500 -0.0040 18 6 11.9308 5.3679 0.2018 19 1 11.9594 6.4335 0.3754 20 6 13.1128 4.6428 0.1406 21 7 13.0780 3.3447 -0.0705 22 14 14.7529 5.5098 0.3594 23 1 14.5205 6.9594 0.5827 24 1 15.4639 4.9359 1.5300 25 1 15.5780 5.3235 -0.8612 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.5849 3.4700 0.8888 32 1 3.5844 3.4694 -0.8911 33 1 5.7846 2.3250 -0.8908 34 1 5.7845 2.3257 0.8892 35 1 5.4175 4.9806 -0.0015 36 1 5.9900 6.7242 0.0018 37 1 6.9375 8.9895 -0.0046 38 1 9.3755 9.3167 -0.0051 39 1 10.8881 7.3828 -0.0063 40 1 13.9040 2.8381 -0.1136 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044570803.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:18 Heat of formation + Delta-G solvation = -124.409193 kcal Electronic energy + Delta-G solvation = -23502.622557 eV Core-core repulsion = 19793.627202 eV Total energy + Delta-G solvation = -3708.995356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63091 -40.93071 -38.98233 -37.88080 -36.28203 -34.76746 -33.17490 -32.48143 -31.75939 -31.14950 -27.84429 -26.34669 -24.42628 -23.64484 -23.24392 -21.94413 -21.59964 -19.94525 -18.83181 -18.76541 -17.90483 -17.54782 -17.19174 -16.98278 -16.62875 -16.51676 -15.85500 -15.47926 -15.39746 -15.28234 -14.68197 -14.56526 -14.38764 -14.28293 -13.62818 -13.52626 -13.31530 -13.01404 -13.00769 -12.93191 -12.83922 -12.53949 -12.52102 -12.48038 -12.03494 -11.67030 -11.53699 -11.47240 -11.41776 -11.27839 -10.39946 -10.18560 -9.91538 -9.74564 -8.46685 -8.45345 -6.24766 0.05676 0.57084 1.12735 1.26407 1.34958 1.45364 1.46645 1.66062 2.02858 2.19664 2.38654 2.87733 3.06380 3.25109 3.48458 3.87555 3.97826 3.98810 4.03945 4.06854 4.09270 4.29972 4.35550 4.44265 4.64625 4.65761 4.77310 4.86261 4.86661 4.93029 4.94220 5.13980 5.16460 5.37912 5.40715 5.46112 5.48176 5.59898 5.70548 6.11225 6.18670 6.64075 6.67495 6.95651 7.37304 8.60433 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.002566 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.286266 B =10909.391220 C =12397.511974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.467 3.533 5 O -0.546 6.546 6 C -0.109 4.109 7 C 0.134 3.866 8 N -0.709 5.709 9 C 0.545 3.455 10 O -0.558 6.558 11 C -0.181 4.181 12 C -0.050 4.050 13 C -0.156 4.156 14 C -0.070 4.070 15 C -0.176 4.176 16 C -0.074 4.074 17 S 0.056 5.944 18 C -0.599 4.599 19 H 0.095 0.905 20 C 0.021 3.979 21 N -0.907 5.907 22 Si 0.996 3.004 23 H -0.256 1.256 24 H -0.271 1.271 25 H -0.270 1.270 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.419 0.581 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.843 6.030 0.101 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.311 3.689 5 O -0.436 6.436 6 C -0.146 4.146 7 C 0.010 3.990 8 N -0.365 5.365 9 C 0.334 3.666 10 O -0.438 6.438 11 C -0.194 4.194 12 C -0.070 4.070 13 C -0.179 4.179 14 C -0.091 4.091 15 C -0.201 4.201 16 C -0.192 4.192 17 S 0.315 5.685 18 C -0.746 4.746 19 H 0.113 0.887 20 C -0.184 4.184 21 N -0.542 5.542 22 Si 0.817 3.183 23 H -0.179 1.179 24 H -0.196 1.196 25 H -0.195 1.195 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.259 0.741 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.166 0.834 39 H 0.134 0.866 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.032 3.413 -0.024 26.255 hybrid contribution 1.704 1.018 0.168 1.992 sum -24.328 4.431 0.144 24.728 Atomic orbital electron populations 1.21818 0.90133 1.04314 1.03943 1.23291 0.97234 0.79309 1.02394 1.86488 1.23540 1.33514 1.83643 1.23908 0.80799 0.92928 0.71278 1.90742 1.61303 1.44802 1.46779 1.21475 0.92311 0.90824 1.09969 1.20875 0.92426 0.83697 1.02021 1.45399 1.05466 1.09075 1.76535 1.18562 0.82805 0.88956 0.76305 1.90814 1.59508 1.43185 1.50287 1.19451 0.91765 0.93587 1.14593 1.21504 0.99879 0.90850 0.94776 1.21362 0.94650 0.97764 1.04114 1.21557 0.94337 0.98239 0.94962 1.21432 1.00853 0.91866 1.05931 1.23002 0.97316 0.99646 0.99286 1.85013 0.96662 1.05822 1.81006 1.24278 0.94490 0.98826 1.57004 0.88686 1.26195 1.03780 0.95526 0.92941 1.70152 1.30018 1.07937 1.46064 0.84961 0.76145 0.78888 0.78352 1.17902 1.19647 1.19496 0.88537 0.90990 0.90980 0.91636 0.91639 0.83326 0.83315 0.93033 0.93044 0.74135 0.81317 0.81377 0.83366 0.86569 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 71.98 0.74 -0.41 16 2 C 0.05 0.74 6.19 71.98 0.45 1.19 16 3 O -0.36 -5.94 10.22 -51.43 -0.53 -6.46 16 4 C 0.47 9.38 7.96 71.23 0.57 9.95 16 5 O -0.55 -16.13 15.73 21.99 0.35 -15.78 16 6 C -0.11 -1.42 5.93 29.85 0.18 -1.24 16 7 C 0.13 3.32 4.96 86.38 0.43 3.75 16 8 N -0.71 -17.48 5.51 -466.34 -2.57 -20.05 16 9 C 0.54 21.03 7.75 86.66 0.67 21.71 16 10 O -0.56 -28.43 13.77 -4.05 -0.06 -28.49 16 11 C -0.18 -6.78 5.89 -19.95 -0.12 -6.90 16 12 C -0.05 -1.24 9.53 22.52 0.21 -1.02 16 13 C -0.16 -3.53 10.02 22.27 0.22 -3.31 16 14 C -0.07 -2.04 10.03 22.29 0.22 -1.82 16 15 C -0.18 -7.26 9.22 22.40 0.21 -7.06 16 16 C -0.07 -3.49 6.14 23.04 0.14 -3.35 16 17 S 0.06 3.31 18.56 -56.49 -1.05 2.27 16 18 C -0.60 -35.58 9.00 67.96 0.61 -34.97 16 19 H 0.10 5.31 4.98 -2.91 -0.01 5.29 16 20 C 0.02 1.22 5.49 84.87 0.47 1.69 16 21 N -0.91 -56.78 13.22 21.65 0.29 -56.50 16 22 Si 1.00 44.69 29.55 68.60 2.03 46.72 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.15 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 35 H 0.42 5.91 6.50 -92.71 -0.60 5.30 16 36 H 0.17 2.19 6.40 -2.91 -0.02 2.17 16 37 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.12 5.25 5.04 -2.91 -0.01 5.24 16 40 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -89.17 356.81 3.94 -85.23 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.48 Total: 14.87 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 5.00 Total: -21.80 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -2.28 Total: -76.55 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.24 Total: -50.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.05 Total: 2.27 kcal Total: -89.17 3.94 -85.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044570803.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.184 kcal (2) G-P(sol) polarization free energy of solvation -89.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds