Wall clock time and date at job start Tue Mar 31 2020 14:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45198 * 109.46899 * 2 1 4 4 C 1.34236 * 117.00095 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99777 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00100 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46701 * 299.99442 * 6 4 3 8 8 C 1.53004 * 109.47418 * 59.99599 * 6 4 3 9 9 N 1.46505 * 109.47236 * 179.97438 * 6 4 3 10 10 C 1.34774 * 120.00150 * 154.99667 * 9 6 4 11 11 O 1.21611 * 119.99964 * 359.97438 * 10 9 6 12 12 C 1.47433 * 119.99869 * 179.97438 * 10 9 6 13 13 C 1.39681 * 120.21363 * 0.02930 * 12 10 9 14 14 C 1.37805 * 119.93452 * 179.97438 * 13 12 10 15 15 C 1.38654 * 120.38625 * 0.02562 * 14 13 12 16 16 C 1.37919 * 120.43362 * 0.02562 * 15 14 13 17 17 C 1.39103 * 120.05168 * 359.97438 * 16 15 14 18 18 S 1.76206 * 120.18762 * 180.02562 * 17 16 15 19 19 C 1.76190 * 99.99940 * 6.84043 * 18 17 16 20 20 H 1.07998 * 120.00270 * 5.65109 * 19 18 17 21 21 C 1.38809 * 120.00047 * 185.65490 * 19 18 17 22 22 N 1.31555 * 120.00018 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00216 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47140 * 59.99767 * 23 21 19 25 25 H 1.48498 * 109.46834 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46736 * 300.00003 * 23 21 19 27 27 H 1.09003 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47135 * 299.99457 * 1 2 3 29 29 H 1.09003 * 109.47420 * 60.00293 * 1 2 3 30 30 H 1.09002 * 109.47333 * 240.00044 * 2 1 3 31 31 H 1.08997 * 109.47396 * 120.00177 * 2 1 3 32 32 H 1.09000 * 109.46661 * 300.00328 * 8 6 4 33 33 H 1.09003 * 109.46425 * 60.00424 * 8 6 4 34 34 H 1.08996 * 109.46954 * 180.02562 * 8 6 4 35 35 H 0.97000 * 119.99614 * 334.99881 * 9 6 4 36 36 H 1.07997 * 120.03131 * 359.97438 * 13 12 10 37 37 H 1.08008 * 119.80557 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.78248 * 180.28485 * 15 14 13 39 39 H 1.07998 * 119.97190 * 179.97438 * 16 15 14 40 40 H 0.96996 * 120.00225 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5842 3.4700 -0.8896 8 6 3.4496 3.6838 1.2499 9 7 5.3836 2.8609 -0.0001 10 6 6.1119 3.8822 -0.4931 11 8 5.5545 4.8671 -0.9382 12 6 7.5842 3.8053 -0.4926 13 6 8.2289 2.6758 0.0170 14 6 9.6054 2.6098 0.0140 15 6 10.3568 3.6594 -0.4920 16 6 9.7364 4.7825 -0.9980 17 6 8.3480 4.8683 -1.0040 18 16 7.5517 6.3011 -1.6502 19 6 8.9451 7.1548 -2.3088 20 1 9.9173 6.6845 -2.3060 21 6 8.7934 8.4318 -2.8313 22 7 7.6091 9.0045 -2.8351 23 14 10.2709 9.3373 -3.5289 24 1 10.8448 8.5555 -4.6534 25 1 9.8461 10.6725 -4.0208 26 1 11.2960 9.5033 -2.4674 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.3610 3.7407 1.2503 33 1 3.7860 3.1511 2.1394 34 1 3.8658 4.6911 1.2500 35 1 5.8281 2.0750 0.3546 36 1 7.6493 1.8551 0.4129 37 1 10.1018 1.7353 0.4082 38 1 11.4349 3.5954 -0.4937 39 1 10.3290 5.5958 -1.3899 40 1 7.5031 9.8970 -3.1998 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049497836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:10 Heat of formation + Delta-G solvation = -115.734798 kcal Electronic energy + Delta-G solvation = -24244.754508 eV Core-core repulsion = 20536.135302 eV Total energy + Delta-G solvation = -3708.619206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95908 -40.88261 -39.05963 -37.91082 -36.21564 -34.75359 -33.23032 -32.41399 -31.80215 -30.88561 -27.82770 -26.38283 -24.96991 -23.75246 -23.38208 -22.13285 -21.46243 -20.19666 -19.16658 -18.52139 -17.79775 -17.72730 -17.35985 -17.05302 -16.55847 -16.08874 -15.75006 -15.53833 -15.30678 -15.26578 -14.70613 -14.55787 -14.42092 -13.96929 -13.63108 -13.50847 -13.30785 -13.28976 -12.97021 -12.95493 -12.90558 -12.72440 -12.56114 -12.48012 -12.06387 -11.58549 -11.55674 -11.52198 -11.40480 -11.30739 -10.43779 -10.34646 -9.95211 -9.81321 -8.46235 -8.44228 -6.22933 0.00024 0.52940 0.94081 1.24696 1.27764 1.39053 1.44830 1.64438 1.95489 2.17292 2.27477 2.88008 3.02614 3.24970 3.43012 3.83219 3.93829 3.98823 4.02327 4.06315 4.07472 4.26315 4.35196 4.56462 4.61559 4.66313 4.74382 4.81214 4.84793 4.94240 5.09045 5.10623 5.17433 5.27359 5.35702 5.37367 5.46092 5.55596 5.66914 6.09384 6.16192 6.43485 6.52869 6.97132 7.21912 8.61094 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.003087 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.022255 B = 9068.388085 C =10293.541549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.475 3.525 5 O -0.523 6.523 6 C 0.152 3.848 7 H 0.116 0.884 8 C -0.150 4.150 9 N -0.709 5.709 10 C 0.557 3.443 11 O -0.543 6.543 12 C -0.182 4.182 13 C -0.055 4.055 14 C -0.158 4.158 15 C -0.066 4.066 16 C -0.174 4.174 17 C -0.070 4.070 18 S 0.073 5.927 19 C -0.604 4.604 20 H 0.095 0.905 21 C 0.026 3.974 22 N -0.904 5.904 23 Si 0.992 3.008 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.260 1.260 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.414 0.586 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.122 0.878 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -18.886 9.074 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.317 3.683 5 O -0.412 6.412 6 C 0.045 3.955 7 H 0.134 0.866 8 C -0.208 4.208 9 N -0.366 5.366 10 C 0.346 3.654 11 O -0.422 6.422 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.181 4.181 15 C -0.087 4.087 16 C -0.199 4.199 17 C -0.188 4.188 18 S 0.332 5.668 19 C -0.750 4.750 20 H 0.112 0.888 21 C -0.180 4.180 22 N -0.538 5.538 23 Si 0.813 3.187 24 H -0.187 1.187 25 H -0.199 1.199 26 H -0.184 1.184 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.254 0.746 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.169 0.831 39 H 0.139 0.861 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.302 -17.716 8.560 21.763 hybrid contribution 2.153 0.115 -0.527 2.219 sum -7.149 -17.601 8.033 20.626 Atomic orbital electron populations 1.21842 0.90359 1.04476 1.03797 1.23398 0.97107 0.78593 1.02993 1.86502 1.22632 1.34359 1.83212 1.23490 0.81513 0.91651 0.71605 1.90645 1.60932 1.43240 1.46402 1.20373 0.81057 0.90173 1.03866 0.86606 1.22084 1.03534 1.00392 0.94837 1.45521 1.04954 1.21480 1.64660 1.18381 0.87499 0.82405 0.77068 1.90797 1.72514 1.32236 1.46699 1.19349 0.91454 0.97343 1.11439 1.21414 0.95833 0.94936 0.95298 1.21303 0.93128 1.00215 1.03468 1.21551 1.01178 0.91874 0.94134 1.21467 0.92953 1.00855 1.04654 1.22981 0.97726 0.99272 0.98807 1.84832 1.10334 1.10534 1.61103 1.24219 0.98903 1.05161 1.46755 0.88775 1.26121 1.00087 0.96989 0.94808 1.70111 1.24706 1.15800 1.43230 0.85106 0.77515 0.77176 0.78938 1.18736 1.19893 1.18435 0.88005 0.90972 0.91550 0.91274 0.90461 0.88240 0.90571 0.91999 0.74644 0.83000 0.81852 0.83114 0.86056 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 71.98 0.74 -0.60 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.35 -6.95 10.12 -51.48 -0.52 -7.47 16 4 C 0.47 11.08 7.32 71.23 0.52 11.61 16 5 O -0.52 -13.89 15.59 21.96 0.34 -13.55 16 6 C 0.15 3.88 3.09 44.24 0.14 4.02 16 7 H 0.12 3.30 7.58 -2.39 -0.02 3.28 16 8 C -0.15 -3.25 9.42 71.98 0.68 -2.57 16 9 N -0.71 -20.61 4.90 -449.35 -2.20 -22.81 16 10 C 0.56 21.69 7.71 86.67 0.67 22.36 16 11 O -0.54 -25.86 13.43 -4.06 -0.05 -25.92 16 12 C -0.18 -7.14 5.89 -19.95 -0.12 -7.25 16 13 C -0.05 -1.58 9.53 22.52 0.21 -1.36 16 14 C -0.16 -4.07 10.02 22.27 0.22 -3.84 16 15 C -0.07 -2.02 10.03 22.29 0.22 -1.79 16 16 C -0.17 -7.22 9.22 22.40 0.21 -7.01 16 17 C -0.07 -3.26 6.14 23.04 0.14 -3.12 16 18 S 0.07 4.16 18.56 -56.49 -1.05 3.11 16 19 C -0.60 -35.01 9.00 67.96 0.61 -34.40 16 20 H 0.09 5.14 4.98 -2.91 -0.01 5.12 16 21 C 0.03 1.47 5.49 84.87 0.47 1.94 16 22 N -0.90 -54.91 13.22 21.65 0.29 -54.62 16 23 Si 0.99 43.67 29.55 68.60 2.03 45.69 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 27 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.08 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.10 1.71 8.11 -2.39 -0.02 1.69 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.41 10.19 5.82 -92.71 -0.54 9.65 16 36 H 0.15 3.17 6.40 -2.91 -0.02 3.15 16 37 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.12 5.40 5.04 -2.91 -0.01 5.39 16 40 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -76.45 355.38 4.53 -71.92 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.54 Total: 24.48 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 5.16 Total: -20.84 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -1.92 Total: -77.43 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.23 Total: -46.93 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.05 Total: 3.11 kcal Total: -76.45 4.53 -71.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049497836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.816 kcal (2) G-P(sol) polarization free energy of solvation -76.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds