Wall clock time and date at job start Tue Mar 31 2020 14:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 119.99808 * 2 1 4 4 O 1.21546 * 119.99485 * 184.57201 * 3 2 1 5 5 C 1.47881 * 120.00142 * 4.56711 * 3 2 1 6 6 C 1.39922 * 120.02606 * 139.52453 * 5 3 2 7 7 C 1.38328 * 120.35840 * 179.97438 * 6 5 3 8 8 C 1.37752 * 120.40968 * 0.26532 * 7 6 5 9 9 C 1.40748 * 120.04011 * 359.46409 * 8 7 6 10 10 C 1.41438 * 120.17506 * 180.26852 * 9 8 7 11 11 H 1.08004 * 120.00110 * 166.85004 * 10 9 8 12 12 C 1.39942 * 120.00306 * 346.85197 * 10 9 8 13 13 N 1.30828 * 119.99796 * 325.11645 * 12 10 9 14 14 Si 1.86793 * 120.00213 * 145.11098 * 12 10 9 15 15 H 1.48504 * 109.47204 * 84.99906 * 14 12 10 16 16 H 1.48498 * 109.47428 * 204.99901 * 14 12 10 17 17 H 1.48503 * 109.47342 * 324.99952 * 14 12 10 18 18 C 1.38997 * 120.02569 * 319.50010 * 5 3 2 19 19 C 1.46496 * 120.00122 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.64478 * 180.69996 * 19 2 1 21 21 C 1.53882 * 109.64493 * 60.27101 * 19 2 1 22 22 C 1.55044 * 106.62578 * 192.96548 * 21 19 2 23 23 S 1.83291 * 102.56528 * 42.43488 * 22 21 19 24 24 O 1.42096 * 109.35387 * 90.18539 * 23 22 21 25 25 O 1.42102 * 109.35504 * 223.25801 * 23 22 21 26 26 C 1.54164 * 109.64797 * 301.13234 * 19 2 1 27 27 H 1.09001 * 109.47708 * 84.21963 * 1 2 3 28 28 H 1.09002 * 109.47170 * 204.22537 * 1 2 3 29 29 H 1.09010 * 109.47366 * 324.22067 * 1 2 3 30 30 H 1.07996 * 119.81481 * 359.95441 * 6 5 3 31 31 H 1.08000 * 119.79133 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.97602 * 179.72503 * 8 7 6 33 33 H 0.96995 * 119.99853 * 180.02562 * 13 12 10 34 34 H 1.08005 * 120.20218 * 0.04129 * 18 5 3 35 35 H 1.08995 * 110.02907 * 312.25862 * 21 19 2 36 36 H 1.08999 * 110.02459 * 73.67714 * 21 19 2 37 37 H 1.08993 * 110.79046 * 160.70307 * 22 21 19 38 38 H 1.09004 * 110.79140 * 284.16957 * 22 21 19 39 39 H 1.09005 * 110.31906 * 266.66201 * 26 19 2 40 40 H 1.09004 * 110.32038 * 28.85464 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3514 1.1689 -0.0839 5 6 1.4029 2.4459 0.1020 6 6 1.9055 3.4815 0.8974 7 6 1.2231 4.6806 0.9974 8 6 0.0385 4.8672 0.3196 9 6 -0.4797 3.8390 -0.4899 10 6 -1.6929 4.0297 -1.1916 11 1 -1.9814 3.3379 -1.9692 12 6 -2.5194 5.1147 -0.8784 13 7 -2.6124 5.5303 0.3586 14 14 -3.4896 5.9695 -2.2264 15 1 -4.7662 5.2453 -2.4528 16 1 -3.7793 7.3674 -1.8174 17 1 -2.6947 5.9754 -3.4807 18 6 0.2117 2.6201 -0.5927 19 6 2.1975 -1.2687 0.0006 20 1 3.2696 -1.0728 0.0130 21 6 1.8337 -2.0766 -1.2576 22 6 2.3690 -3.5141 -1.0318 23 16 1.9172 -3.8381 0.7148 24 8 0.6248 -4.4265 0.7655 25 8 3.0075 -4.4669 1.3744 26 6 1.8066 -2.0924 1.2437 27 1 -0.3634 0.1035 -1.0224 28 1 -0.3633 -0.9372 0.4217 29 1 -0.3634 0.8338 0.6009 30 1 2.8311 3.3437 1.4365 31 1 1.6196 5.4739 1.6137 32 1 -0.4908 5.8047 0.4061 33 1 -3.1856 6.2821 0.5758 34 1 -0.1802 1.8234 -1.2077 35 1 0.7518 -2.0974 -1.3881 36 1 2.3075 -1.6353 -2.1344 37 1 1.8729 -4.2206 -1.6972 38 1 3.4503 -3.5496 -1.1646 39 1 2.5041 -1.9010 2.0592 40 1 0.7885 -1.8534 1.5514 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049639497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:14 Heat of formation + Delta-G solvation = -96.477388 kcal Electronic energy + Delta-G solvation = -25027.028541 eV Core-core repulsion = 21319.244399 eV Total energy + Delta-G solvation = -3707.784142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37983 -39.06331 -38.16162 -37.93114 -37.09572 -35.67598 -34.88650 -31.88890 -31.66373 -30.37807 -28.14314 -27.16206 -26.21600 -24.19021 -22.65273 -22.09917 -20.65826 -19.85016 -19.16870 -18.22273 -17.87212 -17.36111 -17.14632 -16.89605 -16.60285 -16.52606 -16.19588 -15.36310 -15.22606 -15.03458 -14.77988 -14.56349 -14.28819 -13.96609 -13.60252 -13.52626 -13.35950 -13.28170 -13.20631 -13.10849 -12.97968 -12.88659 -12.69086 -12.46374 -12.25761 -12.18418 -11.96779 -11.80158 -11.42887 -11.33332 -10.87454 -10.75144 -9.82375 -9.56106 -9.40014 -8.82734 -6.29746 -0.96715 0.50674 0.96964 1.39802 1.45816 1.48538 1.58646 1.87650 1.99135 2.18915 2.58417 2.64050 3.04344 3.26883 3.54966 3.63657 3.67628 3.74514 3.92144 4.01778 4.22648 4.38482 4.50203 4.55673 4.59075 4.67407 4.77914 4.87599 4.99100 5.00863 5.02975 5.07487 5.16968 5.30832 5.41282 5.56841 5.84157 5.98402 6.03227 6.20066 6.26261 6.59621 6.86035 6.95632 7.09091 8.15537 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.003073 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.702619 B = 9109.789814 C = 9812.049389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.595 5.595 3 C 0.569 3.431 4 O -0.579 6.579 5 C -0.108 4.108 6 C -0.217 4.217 7 C -0.103 4.103 8 C -0.195 4.195 9 C 0.079 3.921 10 C -0.492 4.492 11 H 0.088 0.912 12 C 0.054 3.946 13 N -0.790 5.790 14 Si 0.968 3.032 15 H -0.256 1.256 16 H -0.269 1.269 17 H -0.261 1.261 18 C -0.203 4.203 19 C 0.139 3.861 20 H 0.112 0.888 21 C -0.133 4.133 22 C -0.556 4.556 23 S 2.412 3.588 24 O -0.966 6.966 25 O -0.975 6.975 26 C -0.612 4.612 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.294 0.706 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.169 0.831 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 -12.952 -3.339 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.326 5.326 3 C 0.360 3.640 4 O -0.460 6.460 5 C -0.111 4.111 6 C -0.237 4.237 7 C -0.121 4.121 8 C -0.214 4.214 9 C 0.076 3.924 10 C -0.519 4.519 11 H 0.106 0.894 12 C -0.167 4.167 13 N -0.413 5.413 14 Si 0.789 3.211 15 H -0.180 1.180 16 H -0.193 1.193 17 H -0.185 1.185 18 C -0.223 4.223 19 C 0.034 3.966 20 H 0.130 0.870 21 C -0.172 4.172 22 C -0.689 4.689 23 S 2.598 3.402 24 O -0.963 6.963 25 O -0.972 6.972 26 C -0.741 4.741 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.187 0.813 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.714 -13.683 -2.645 14.198 hybrid contribution -0.277 1.619 -0.370 1.684 sum 2.437 -12.064 -3.015 12.671 Atomic orbital electron populations 1.22356 0.77692 1.04493 1.03521 1.47649 1.07920 1.04252 1.72801 1.18781 0.86393 0.84584 0.74206 1.90651 1.15222 1.87973 1.52121 1.19461 0.96366 0.93418 1.01829 1.20425 1.01548 0.94800 1.06924 1.20790 0.95298 0.96617 0.99374 1.21387 0.96968 0.99763 1.03310 1.17804 0.93182 0.90769 0.90628 1.19793 1.03431 1.10705 1.17980 0.89408 1.26754 0.96493 0.96213 0.97275 1.69937 1.29535 1.21386 1.20419 0.85428 0.78643 0.77885 0.79192 1.18021 1.19338 1.18455 1.21440 0.96393 0.98124 1.06341 1.21607 0.99448 0.83430 0.92107 0.87024 1.22631 1.04583 0.91398 0.98579 1.30456 1.13352 1.04500 1.20564 1.08273 0.74162 0.77305 0.80479 1.93586 1.40706 1.75120 1.86901 1.93571 1.55373 1.73799 1.74452 1.30990 1.13170 1.22433 1.07525 0.90520 0.88149 0.91093 0.88353 0.86985 0.87909 0.89450 0.85579 0.87393 0.87259 0.81326 0.82200 0.83434 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.49 7.64 127.77 0.98 2.47 16 2 N -0.59 -16.57 2.79 -822.09 -2.29 -18.86 16 3 C 0.57 21.65 7.33 86.80 0.64 22.29 16 4 O -0.58 -24.69 16.28 -3.86 -0.06 -24.75 16 5 C -0.11 -4.64 5.19 -20.13 -0.10 -4.75 16 6 C -0.22 -9.77 9.64 22.70 0.22 -9.55 16 7 C -0.10 -4.68 10.01 22.18 0.22 -4.45 16 8 C -0.19 -9.65 8.86 22.77 0.20 -9.45 16 9 C 0.08 3.86 5.65 -21.32 -0.12 3.74 16 10 C -0.49 -23.64 8.96 23.47 0.21 -23.43 16 11 H 0.09 3.97 8.03 -2.91 -0.02 3.95 16 12 C 0.05 2.43 4.83 85.26 0.41 2.84 16 13 N -0.79 -37.30 11.38 21.83 0.25 -37.05 16 14 Si 0.97 34.15 29.67 68.60 2.04 36.18 16 15 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 16 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 17 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 18 C -0.20 -8.84 7.36 23.01 0.17 -8.67 16 19 C 0.14 2.83 2.94 45.68 0.13 2.97 16 20 H 0.11 2.53 6.92 -2.39 -0.02 2.51 16 21 C -0.13 -1.78 5.93 31.59 0.19 -1.59 16 22 C -0.56 -5.03 7.31 72.68 0.53 -4.50 16 23 S 2.41 38.15 6.10 -56.49 -0.34 37.81 16 24 O -0.97 -21.49 18.14 -127.47 -2.31 -23.81 16 25 O -0.97 -22.79 18.15 -127.47 -2.31 -25.10 16 26 C -0.61 -10.18 6.75 72.38 0.49 -9.69 16 27 H 0.08 1.72 6.80 -2.39 -0.02 1.70 16 28 H 0.10 1.72 6.38 -2.39 -0.02 1.70 16 29 H 0.07 2.17 6.00 -2.38 -0.01 2.15 16 30 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.10 5.26 6.01 -2.91 -0.02 5.24 16 33 H 0.29 12.45 8.30 -92.71 -0.77 11.68 16 34 H 0.13 4.80 5.39 -2.91 -0.02 4.78 16 35 H 0.11 1.18 7.38 -2.39 -0.02 1.17 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.16 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.15 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.15 2.33 6.21 -2.39 -0.01 2.32 16 Total: -1.00 -70.98 338.32 0.20 -70.78 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 1.08 Total: 26.56 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 4.16 Total: -41.76 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -2.04 Total: -55.91 kcal Atomic # 8 Polarization: -68.97 SS G_CDS: -4.69 Total: -73.66 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.04 Total: 36.18 kcal Atomic # 16 Polarization: 38.15 SS G_CDS: -0.34 Total: 37.81 kcal Total: -70.98 0.20 -70.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049639497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.698 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds