Wall clock time and date at job start Tue Mar 31 2020 14:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99627 * 2 1 4 4 O 1.21547 * 119.99459 * 174.75643 * 3 2 1 5 5 C 1.47879 * 120.00528 * 354.74769 * 3 2 1 6 6 C 1.39921 * 120.02489 * 328.88495 * 5 3 2 7 7 C 1.38335 * 120.35745 * 179.73995 * 6 5 3 8 8 C 1.37752 * 120.41146 * 0.23538 * 7 6 5 9 9 C 1.40750 * 120.03932 * 0.04280 * 8 7 6 10 10 C 1.41437 * 120.17306 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00401 * 29.24894 * 10 9 8 12 12 C 1.39937 * 119.99753 * 209.24112 * 10 9 8 13 13 N 1.30822 * 120.00131 * 10.82179 * 12 10 9 14 14 Si 1.86800 * 119.99983 * 190.81984 * 12 10 9 15 15 H 1.48506 * 109.47093 * 59.99981 * 14 12 10 16 16 H 1.48495 * 109.47142 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47402 * 300.00289 * 14 12 10 18 18 C 1.39000 * 120.02518 * 149.16138 * 5 3 2 19 19 C 1.46498 * 119.99903 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.63823 * 180.70390 * 19 2 1 21 21 C 1.53878 * 109.64387 * 301.12909 * 19 2 1 22 22 C 1.54974 * 106.65936 * 167.15433 * 21 19 2 23 23 S 1.83290 * 102.47776 * 317.38346 * 22 21 19 24 24 O 1.42102 * 109.35171 * 269.90175 * 23 22 21 25 25 O 1.42100 * 109.35541 * 136.69634 * 23 22 21 26 26 C 1.54157 * 109.64701 * 60.27112 * 19 2 1 27 27 H 1.09003 * 109.47074 * 92.03856 * 1 2 3 28 28 H 1.08991 * 109.47034 * 212.04449 * 1 2 3 29 29 H 1.09006 * 109.47371 * 332.04413 * 1 2 3 30 30 H 1.07999 * 119.82179 * 0.02562 * 6 5 3 31 31 H 1.08004 * 119.79095 * 180.25345 * 7 6 5 32 32 H 1.08001 * 119.97460 * 180.02562 * 8 7 6 33 33 H 0.97005 * 120.00172 * 180.02562 * 13 12 10 34 34 H 1.07993 * 120.20112 * 359.97438 * 18 5 3 35 35 H 1.09002 * 110.02598 * 286.32192 * 21 19 2 36 36 H 1.08996 * 110.02868 * 47.74556 * 21 19 2 37 37 H 1.08990 * 110.76100 * 199.17810 * 22 21 19 38 38 H 1.08999 * 111.07141 * 75.72678 * 22 21 19 39 39 H 1.09005 * 110.31900 * 331.14253 * 26 19 2 40 40 H 1.09000 * 110.31980 * 93.33677 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3505 1.1695 0.0962 5 6 1.4041 2.4453 -0.1172 6 6 0.2096 2.5021 -0.8436 7 6 -0.4861 3.6927 -0.9532 8 6 -0.0088 4.8370 -0.3529 9 6 1.1941 4.8006 0.3770 10 6 1.6871 5.9739 0.9940 11 1 1.0006 6.7384 1.3266 12 6 3.0644 6.1442 1.1736 13 7 3.9058 5.3304 0.5894 14 14 3.7015 7.5334 2.2476 15 1 3.1769 7.3728 3.6276 16 1 5.1858 7.4967 2.2755 17 1 3.2483 8.8348 1.6942 18 6 1.9027 3.5923 0.4893 19 6 2.1975 -1.2687 0.0006 20 1 3.2696 -1.0727 0.0131 21 6 1.8073 -2.0908 1.2415 22 6 2.3494 -3.5245 1.0131 23 16 1.9312 -3.8306 -0.7450 24 8 0.6400 -4.4183 -0.8264 25 8 3.0351 -4.4500 -1.3907 26 6 1.8331 -2.0781 -1.2598 27 1 -0.3633 -0.0366 -1.0270 28 1 -0.3633 -0.8710 0.5452 29 1 -0.3634 0.9078 0.4818 30 1 -0.1738 1.6105 -1.3174 31 1 -1.4093 3.7252 -1.5127 32 1 -0.5578 5.7627 -0.4427 33 1 4.8605 5.4482 0.7142 34 1 2.8264 3.5540 1.0475 35 1 2.2624 -1.6595 2.1331 36 1 0.7228 -2.1129 1.3487 37 1 1.8408 -4.2377 1.6616 38 1 3.4278 -3.5648 1.1669 39 1 0.8218 -1.8355 -1.5862 40 1 2.5477 -1.8776 -2.0581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049639498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:18 Heat of formation + Delta-G solvation = -69.333648 kcal Electronic energy + Delta-G solvation = -25099.991835 eV Core-core repulsion = 21393.384734 eV Total energy + Delta-G solvation = -3706.607101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99490 -37.55801 -37.27866 -36.59641 -36.23211 -34.19014 -33.41710 -30.55257 -29.61538 -29.45886 -27.04730 -25.52122 -25.14840 -22.89577 -21.06479 -20.76021 -19.14916 -19.05583 -17.78466 -17.08492 -16.92209 -16.03649 -15.91944 -15.79200 -15.14302 -15.04410 -14.78427 -14.40170 -14.10127 -13.87007 -13.32692 -13.12072 -12.77907 -12.66254 -12.53023 -12.47935 -12.38976 -12.29510 -12.24673 -12.04146 -11.72220 -11.40484 -11.18116 -11.03864 -10.98034 -10.77640 -10.60232 -10.45596 -10.16087 -9.75565 -9.30731 -9.12103 -8.57730 -7.71224 -7.52942 -6.78976 -4.49292 -0.24392 2.09824 2.25329 2.74824 3.04184 3.05859 3.08832 3.09822 3.30830 3.58276 3.77315 3.88486 4.07597 4.26941 4.39376 4.53058 4.56298 4.69601 5.04090 5.20446 5.27320 5.34975 5.39470 5.45336 5.52674 5.72405 5.75495 5.95648 6.04994 6.24202 6.56001 6.66225 6.91658 6.93697 7.15050 7.30272 7.49301 7.65278 7.75253 7.89839 8.09448 8.43028 8.65429 8.75323 8.77452 10.14875 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.003059 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.522811 B = 9150.110174 C = 9864.182002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.569 3.431 4 O -0.536 6.536 5 C -0.129 4.129 6 C -0.221 4.221 7 C -0.102 4.102 8 C -0.205 4.205 9 C 0.100 3.900 10 C -0.463 4.463 11 H 0.080 0.920 12 C 0.071 3.929 13 N -0.791 5.791 14 Si 0.913 3.087 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.089 4.089 19 C 0.150 3.850 20 H 0.122 0.878 21 C -0.134 4.134 22 C -0.583 4.583 23 S 2.391 3.609 24 O -0.937 6.937 25 O -0.938 6.938 26 C -0.608 4.608 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.284 0.716 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -13.372 1.433 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.345 5.345 3 C 0.361 3.639 4 O -0.413 6.413 5 C -0.132 4.132 6 C -0.241 4.241 7 C -0.120 4.120 8 C -0.225 4.225 9 C 0.098 3.902 10 C -0.493 4.493 11 H 0.098 0.902 12 C -0.147 4.147 13 N -0.416 5.416 14 Si 0.737 3.263 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.190 1.190 18 C -0.109 4.109 19 C 0.044 3.956 20 H 0.140 0.860 21 C -0.173 4.173 22 C -0.713 4.713 23 S 2.574 3.426 24 O -0.934 6.934 25 O -0.935 6.935 26 C -0.739 4.739 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.819 -14.236 0.928 14.768 hybrid contribution 0.383 1.370 0.677 1.576 sum -3.436 -12.865 1.605 13.413 Atomic orbital electron populations 1.22260 0.79431 1.03958 1.01698 1.47688 1.06898 1.04325 1.75630 1.19087 0.87043 0.83692 0.74080 1.90715 1.14217 1.87077 1.49283 1.19370 0.96783 0.92047 1.04995 1.20809 0.97209 0.97950 1.08139 1.20479 0.98372 0.93243 0.99894 1.21185 1.00752 0.96848 1.03753 1.17582 0.90675 0.92474 0.89515 1.19542 0.91911 1.03269 1.34536 0.90219 1.25944 0.97064 0.97339 0.94378 1.69755 1.04337 1.34240 1.33256 0.86287 0.77985 0.81115 0.80873 1.18845 1.20244 1.18990 1.21592 1.00061 0.89639 0.99631 1.21264 1.00413 0.84540 0.89415 0.86049 1.22602 1.03143 0.91004 1.00581 1.30543 1.11707 1.05270 1.23812 1.08980 0.75560 0.78424 0.79631 1.93623 1.39437 1.74527 1.85774 1.93620 1.53531 1.73389 1.72990 1.30977 1.12455 1.22486 1.07959 0.92395 0.91963 0.88376 0.87764 0.88811 0.88574 0.90440 0.85151 0.87721 0.88876 0.84216 0.84092 0.83916 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 7.70 59.85 0.46 1.27 16 2 N -0.61 -8.92 2.79 -173.82 -0.48 -9.41 16 3 C 0.57 11.44 7.42 -12.31 -0.09 11.35 16 4 O -0.54 -12.49 16.07 5.32 0.09 -12.40 16 5 C -0.13 -2.83 5.29 -105.04 -0.56 -3.39 16 6 C -0.22 -4.31 7.60 -38.92 -0.30 -4.61 16 7 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 8 C -0.21 -4.65 9.78 -38.81 -0.38 -5.03 16 9 C 0.10 2.53 5.54 -106.87 -0.59 1.94 16 10 C -0.46 -11.78 9.06 -37.73 -0.34 -12.13 16 11 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 12 C 0.07 1.75 5.25 -17.35 -0.09 1.66 16 13 N -0.79 -20.57 10.88 55.55 0.60 -19.97 16 14 Si 0.91 18.36 29.57 -169.99 -5.03 13.33 16 15 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 16 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 C -0.09 -2.25 8.20 -38.44 -0.32 -2.57 16 19 C 0.15 1.72 2.95 -66.87 -0.20 1.52 16 20 H 0.12 1.55 6.92 -51.93 -0.36 1.19 16 21 C -0.13 -1.13 5.90 -25.23 -0.15 -1.27 16 22 C -0.58 -3.81 7.31 38.20 0.28 -3.53 16 23 S 2.39 21.37 6.10 -107.50 -0.66 20.71 16 24 O -0.94 -11.09 18.15 -57.71 -1.05 -12.14 16 25 O -0.94 -11.71 18.15 -57.71 -1.05 -12.75 16 26 C -0.61 -5.63 6.84 37.76 0.26 -5.37 16 27 H 0.06 0.61 6.52 -51.93 -0.34 0.27 16 28 H 0.06 0.53 6.22 -51.93 -0.32 0.21 16 29 H 0.10 1.31 5.76 -51.93 -0.30 1.01 16 30 H 0.10 1.69 4.97 -52.49 -0.26 1.43 16 31 H 0.09 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 33 H 0.28 6.85 8.30 -40.82 -0.34 6.52 16 34 H 0.13 3.58 6.13 -52.49 -0.32 3.26 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.66 6.28 -51.93 -0.33 0.33 16 37 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.14 1.19 6.90 -51.93 -0.36 0.83 16 40 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -34.08 336.41 -9.58 -43.66 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.67 Total: 6.49 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -2.41 Total: -22.59 kcal Atomic # 7 Polarization: -29.50 SS G_CDS: 0.12 Total: -29.38 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -2.01 Total: -37.29 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 16 Polarization: 21.37 SS G_CDS: -0.66 Total: 20.71 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.08 -9.58 -43.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049639498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.669 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds