Wall clock time and date at job start Tue Mar 31 2020 14:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99627 * 2 1 4 4 O 1.21547 * 119.99459 * 174.75643 * 3 2 1 5 5 C 1.47879 * 120.00528 * 354.74769 * 3 2 1 6 6 C 1.39921 * 120.02489 * 328.88495 * 5 3 2 7 7 C 1.38335 * 120.35745 * 179.73995 * 6 5 3 8 8 C 1.37752 * 120.41146 * 0.23538 * 7 6 5 9 9 C 1.40750 * 120.03932 * 0.04280 * 8 7 6 10 10 C 1.41437 * 120.17306 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00401 * 29.24894 * 10 9 8 12 12 C 1.39937 * 119.99753 * 209.24112 * 10 9 8 13 13 N 1.30822 * 120.00131 * 10.82179 * 12 10 9 14 14 Si 1.86800 * 119.99983 * 190.81984 * 12 10 9 15 15 H 1.48506 * 109.47093 * 59.99981 * 14 12 10 16 16 H 1.48495 * 109.47142 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47402 * 300.00289 * 14 12 10 18 18 C 1.39000 * 120.02518 * 149.16138 * 5 3 2 19 19 C 1.46498 * 119.99903 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.63823 * 180.70390 * 19 2 1 21 21 C 1.53878 * 109.64387 * 301.12909 * 19 2 1 22 22 C 1.54974 * 106.65936 * 167.15433 * 21 19 2 23 23 S 1.83290 * 102.47776 * 317.38346 * 22 21 19 24 24 O 1.42102 * 109.35171 * 269.90175 * 23 22 21 25 25 O 1.42100 * 109.35541 * 136.69634 * 23 22 21 26 26 C 1.54157 * 109.64701 * 60.27112 * 19 2 1 27 27 H 1.09003 * 109.47074 * 92.03856 * 1 2 3 28 28 H 1.08991 * 109.47034 * 212.04449 * 1 2 3 29 29 H 1.09006 * 109.47371 * 332.04413 * 1 2 3 30 30 H 1.07999 * 119.82179 * 0.02562 * 6 5 3 31 31 H 1.08004 * 119.79095 * 180.25345 * 7 6 5 32 32 H 1.08001 * 119.97460 * 180.02562 * 8 7 6 33 33 H 0.97005 * 120.00172 * 180.02562 * 13 12 10 34 34 H 1.07993 * 120.20112 * 359.97438 * 18 5 3 35 35 H 1.09002 * 110.02598 * 286.32192 * 21 19 2 36 36 H 1.08996 * 110.02868 * 47.74556 * 21 19 2 37 37 H 1.08990 * 110.76100 * 199.17810 * 22 21 19 38 38 H 1.08999 * 111.07141 * 75.72678 * 22 21 19 39 39 H 1.09005 * 110.31900 * 331.14253 * 26 19 2 40 40 H 1.09000 * 110.31980 * 93.33677 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3505 1.1695 0.0962 5 6 1.4041 2.4453 -0.1172 6 6 0.2096 2.5021 -0.8436 7 6 -0.4861 3.6927 -0.9532 8 6 -0.0088 4.8370 -0.3529 9 6 1.1941 4.8006 0.3770 10 6 1.6871 5.9739 0.9940 11 1 1.0006 6.7384 1.3266 12 6 3.0644 6.1442 1.1736 13 7 3.9058 5.3304 0.5894 14 14 3.7015 7.5334 2.2476 15 1 3.1769 7.3728 3.6276 16 1 5.1858 7.4967 2.2755 17 1 3.2483 8.8348 1.6942 18 6 1.9027 3.5923 0.4893 19 6 2.1975 -1.2687 0.0006 20 1 3.2696 -1.0727 0.0131 21 6 1.8073 -2.0908 1.2415 22 6 2.3494 -3.5245 1.0131 23 16 1.9312 -3.8306 -0.7450 24 8 0.6400 -4.4183 -0.8264 25 8 3.0351 -4.4500 -1.3907 26 6 1.8331 -2.0781 -1.2598 27 1 -0.3633 -0.0366 -1.0270 28 1 -0.3633 -0.8710 0.5452 29 1 -0.3634 0.9078 0.4818 30 1 -0.1738 1.6105 -1.3174 31 1 -1.4093 3.7252 -1.5127 32 1 -0.5578 5.7627 -0.4427 33 1 4.8605 5.4482 0.7142 34 1 2.8264 3.5540 1.0475 35 1 2.2624 -1.6595 2.1331 36 1 0.7228 -2.1129 1.3487 37 1 1.8408 -4.2377 1.6616 38 1 3.4278 -3.5648 1.1669 39 1 0.8218 -1.8355 -1.5862 40 1 2.5477 -1.8776 -2.0581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049639498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:17 Heat of formation + Delta-G solvation = -93.871754 kcal Electronic energy + Delta-G solvation = -25101.055887 eV Core-core repulsion = 21393.384734 eV Total energy + Delta-G solvation = -3707.671153 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37411 -39.06711 -38.16018 -37.90575 -37.09353 -35.73801 -34.75386 -31.98236 -31.29976 -30.52341 -28.16561 -27.14325 -26.21700 -24.17847 -22.79898 -21.93983 -20.45674 -19.85248 -19.35810 -18.12342 -17.90969 -17.45569 -17.09691 -16.75440 -16.60781 -16.46125 -16.16788 -15.36564 -15.09576 -15.08153 -14.80013 -14.55965 -14.18940 -14.05155 -13.55907 -13.53478 -13.38080 -13.29873 -13.22097 -13.12820 -12.98191 -12.81504 -12.61919 -12.47836 -12.19746 -12.05038 -11.91880 -11.78722 -11.47747 -11.31665 -11.09139 -10.70445 -9.80263 -9.42545 -9.30824 -8.59521 -6.39553 -0.96795 0.43025 1.02109 1.36882 1.47260 1.49304 1.50166 1.88601 2.05762 2.20294 2.58671 2.77627 3.04763 3.27408 3.54786 3.62958 3.66604 3.79483 3.93525 3.98680 4.23467 4.45559 4.53280 4.56929 4.62837 4.73383 4.75675 4.86005 4.90621 5.00122 5.08853 5.09991 5.20192 5.31916 5.49211 5.56180 5.84120 5.95442 6.05333 6.25003 6.33583 6.61484 6.90490 6.95261 7.17167 8.35681 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.003059 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.522811 B = 9150.110174 C = 9864.182002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.597 5.597 3 C 0.562 3.438 4 O -0.583 6.583 5 C -0.137 4.137 6 C -0.195 4.195 7 C -0.100 4.100 8 C -0.211 4.211 9 C 0.067 3.933 10 C -0.501 4.501 11 H 0.082 0.918 12 C 0.027 3.973 13 N -0.835 5.835 14 Si 0.984 3.016 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.256 1.256 18 C -0.124 4.124 19 C 0.138 3.862 20 H 0.101 0.899 21 C -0.133 4.133 22 C -0.559 4.559 23 S 2.412 3.588 24 O -0.962 6.962 25 O -0.977 6.977 26 C -0.605 4.605 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.284 0.716 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.170 0.830 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 -15.116 1.502 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.329 5.329 3 C 0.354 3.646 4 O -0.464 6.464 5 C -0.140 4.140 6 C -0.215 4.215 7 C -0.118 4.118 8 C -0.231 4.231 9 C 0.065 3.935 10 C -0.531 4.531 11 H 0.100 0.900 12 C -0.186 4.186 13 N -0.462 5.462 14 Si 0.804 3.196 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.180 1.180 18 C -0.145 4.145 19 C 0.032 3.968 20 H 0.119 0.881 21 C -0.172 4.172 22 C -0.691 4.691 23 S 2.598 3.402 24 O -0.959 6.959 25 O -0.974 6.974 26 C -0.735 4.735 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.188 0.812 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.273 -16.029 0.962 17.239 hybrid contribution 0.955 1.731 0.590 2.063 sum -5.318 -14.298 1.552 15.334 Atomic orbital electron populations 1.22564 0.77251 1.05302 1.03648 1.47623 1.08218 1.03728 1.73292 1.18904 0.86456 0.84835 0.74436 1.90688 1.16087 1.87876 1.51736 1.19688 0.97663 0.92283 1.04416 1.21331 0.95272 0.99444 1.05412 1.20954 0.99681 0.92158 0.99009 1.21468 0.99779 0.98567 1.03302 1.17914 0.92153 0.92614 0.90803 1.19820 0.92758 1.03982 1.36547 0.90013 1.26808 0.96963 0.99690 0.95160 1.69885 1.04406 1.36528 1.35377 0.85227 0.77298 0.78045 0.79000 1.18257 1.19907 1.18013 1.21381 0.99890 0.91385 1.01851 1.21540 0.99273 0.83753 0.92187 0.88082 1.22620 1.04662 0.91238 0.98670 1.30445 1.13097 1.04569 1.21016 1.08278 0.74111 0.77441 0.80373 1.93586 1.40547 1.75083 1.86690 1.93572 1.54638 1.74352 1.74883 1.30942 1.13364 1.22240 1.06961 0.90156 0.87838 0.89854 0.83463 0.84408 0.87564 0.90570 0.88722 0.87789 0.86628 0.81175 0.82678 0.82350 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 7.70 127.77 0.98 2.02 16 2 N -0.60 -16.26 2.79 -822.11 -2.29 -18.55 16 3 C 0.56 22.83 7.42 86.80 0.64 23.48 16 4 O -0.58 -28.51 16.07 -3.86 -0.06 -28.57 16 5 C -0.14 -6.10 5.29 -20.13 -0.11 -6.20 16 6 C -0.20 -7.11 7.60 22.70 0.17 -6.94 16 7 C -0.10 -3.72 10.01 22.18 0.22 -3.50 16 8 C -0.21 -9.50 9.78 22.77 0.22 -9.28 16 9 C 0.07 3.55 5.54 -21.32 -0.12 3.43 16 10 C -0.50 -26.79 9.06 23.47 0.21 -26.58 16 11 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 12 C 0.03 1.41 5.25 85.25 0.45 1.85 16 13 N -0.84 -46.48 10.88 21.82 0.24 -46.25 16 14 Si 0.98 39.19 29.57 68.60 2.03 41.22 16 15 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 16 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 17 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 18 C -0.12 -6.64 8.20 23.01 0.19 -6.45 16 19 C 0.14 2.89 2.95 45.68 0.13 3.03 16 20 H 0.10 2.58 6.92 -2.39 -0.02 2.56 16 21 C -0.13 -1.78 5.90 31.57 0.19 -1.60 16 22 C -0.56 -5.25 7.31 72.66 0.53 -4.72 16 23 S 2.41 37.33 6.10 -56.49 -0.34 36.98 16 24 O -0.96 -20.07 18.15 -127.49 -2.31 -22.39 16 25 O -0.98 -23.22 18.15 -127.49 -2.31 -25.53 16 26 C -0.61 -9.76 6.84 72.37 0.50 -9.27 16 27 H 0.08 1.25 6.52 -2.39 -0.02 1.24 16 28 H 0.10 1.21 6.22 -2.39 -0.01 1.20 16 29 H 0.08 1.93 5.76 -2.38 -0.01 1.91 16 30 H 0.15 4.05 4.97 -2.91 -0.01 4.04 16 31 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.28 14.69 8.30 -92.70 -0.77 13.92 16 34 H 0.09 5.67 6.13 -2.91 -0.02 5.65 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.12 1.06 6.28 -2.39 -0.02 1.04 16 37 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.16 2.05 6.90 -2.38 -0.02 2.03 16 40 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -80.44 336.41 0.24 -80.20 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 1.08 Total: 23.61 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 4.22 Total: -40.74 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -2.05 Total: -64.79 kcal Atomic # 8 Polarization: -71.80 SS G_CDS: -4.69 Total: -76.49 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 37.33 SS G_CDS: -0.34 Total: 36.98 kcal Total: -80.44 0.24 -80.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049639498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.669 kcal (2) G-P(sol) polarization free energy of solvation -80.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds