Wall clock time and date at job start Tue Mar 31 2020 14:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.47350 * 2 1 4 4 C 1.34741 * 116.99893 * 179.97438 * 3 2 1 5 5 O 1.21508 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.47467 * 119.99823 * 179.97438 * 4 3 2 7 7 C 1.39811 * 120.07862 * 0.25359 * 6 4 3 8 8 C 1.37643 * 119.91927 * 180.25049 * 7 6 4 9 9 C 1.39156 * 120.07823 * 359.49263 * 8 7 6 10 10 N 1.39410 * 119.91985 * 180.27150 * 9 8 7 11 11 C 1.34780 * 119.99722 * 144.85132 * 10 9 8 12 12 O 1.21276 * 119.99800 * 4.58173 * 11 10 9 13 13 C 1.50700 * 119.99707 * 184.58476 * 11 10 9 14 14 S 1.81398 * 109.46796 * 180.02562 * 13 11 10 15 15 C 1.81403 * 103.00278 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47587 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99860 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00348 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00205 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46780 * 90.00258 * 20 18 16 22 22 H 1.48501 * 109.47275 * 209.99686 * 20 18 16 23 23 H 1.48493 * 109.47083 * 329.99913 * 20 18 16 24 24 C 1.39143 * 120.15543 * 0.25983 * 9 8 7 25 25 C 1.37648 * 120.08444 * 359.97438 * 24 9 8 26 26 H 1.09006 * 109.46647 * 59.99921 * 1 2 3 27 27 H 1.09000 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47172 * 300.00467 * 1 2 3 29 29 H 1.08995 * 109.46920 * 240.00015 * 2 1 3 30 30 H 1.08997 * 109.46530 * 119.99847 * 2 1 3 31 31 H 1.07998 * 120.03691 * 0.02562 * 7 6 4 32 32 H 1.07995 * 119.96333 * 179.76828 * 8 7 6 33 33 H 0.96996 * 120.00352 * 324.85216 * 10 9 8 34 34 H 1.08998 * 109.47369 * 299.99697 * 13 11 10 35 35 H 1.08997 * 109.47476 * 60.00208 * 13 11 10 36 36 H 1.09006 * 109.46737 * 300.00026 * 15 14 13 37 37 H 1.09005 * 109.47063 * 59.99581 * 15 14 13 38 38 H 0.96999 * 120.00429 * 180.02562 * 19 18 16 39 39 H 1.08008 * 119.95781 * 180.02562 * 24 9 8 40 40 H 1.07998 * 120.03924 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 0.0005 5 8 4.0901 0.5818 0.0015 6 6 3.9136 2.9081 0.0000 7 6 3.0635 4.0181 0.0043 8 6 3.5931 5.2885 -0.0014 9 6 4.9729 5.4689 -0.0008 10 7 5.5058 6.7571 -0.0009 11 6 6.6450 7.0151 0.6715 12 8 7.2509 6.1114 1.2071 13 6 7.1657 8.4267 0.7579 14 16 8.7030 8.4461 1.7206 15 6 9.1667 10.1999 1.7138 16 6 10.4473 10.3840 2.4864 17 1 10.9335 9.5313 2.9370 18 6 10.9984 11.6409 2.6182 19 7 10.4067 12.6792 2.0691 20 14 12.5855 11.8692 3.5766 21 1 13.7432 11.7295 2.6572 22 1 12.6022 13.2207 4.1917 23 1 12.6725 10.8390 4.6425 24 6 5.8220 4.3665 0.0001 25 6 5.2994 3.0931 0.0010 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9925 3.8787 0.0084 32 1 2.9371 6.1464 -0.0019 33 1 5.0568 7.4677 -0.4849 34 1 7.3613 8.8039 -0.2458 35 1 6.4233 9.0587 1.2453 36 1 9.3117 10.5333 0.6861 37 1 8.3742 10.7871 2.1779 38 1 10.7945 13.5635 2.1614 39 1 6.8925 4.5102 0.0010 40 1 5.9590 2.2380 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:34 Heat of formation + Delta-G solvation = -99.639834 kcal Electronic energy + Delta-G solvation = -22815.174634 eV Core-core repulsion = 19107.253358 eV Total energy + Delta-G solvation = -3707.921276 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00791 -40.40540 -38.47876 -36.84004 -35.01143 -33.18353 -32.27980 -31.31089 -31.06476 -29.09828 -28.50792 -24.84679 -23.56338 -23.12831 -22.87605 -21.35996 -20.68411 -18.50575 -17.96850 -17.30014 -17.02073 -16.86378 -16.48234 -15.78223 -15.37114 -15.05091 -14.67142 -14.54344 -14.44268 -14.12604 -13.84764 -13.72878 -13.29072 -13.25579 -12.89205 -12.72101 -12.54532 -12.34219 -12.30924 -12.04019 -11.98664 -11.56771 -10.90580 -10.89998 -10.83252 -10.74850 -10.63544 -10.10621 -9.96226 -9.61907 -9.30019 -8.86947 -8.64850 -8.51805 -6.74375 -6.23480 -4.27549 0.36086 1.09469 2.12439 2.17135 2.31354 2.56488 2.96835 3.25232 3.30942 3.36779 3.51859 3.73338 4.32654 4.33435 4.49688 4.51135 4.56759 4.63509 4.68931 4.84689 4.97818 5.07777 5.14251 5.22106 5.23527 5.29053 5.33884 5.45029 5.52456 5.69302 5.78246 5.97525 6.02667 6.07158 6.21318 6.63451 7.01570 7.02323 7.06745 7.47193 7.71781 7.93675 7.96504 8.74649 9.36062 10.87949 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.044836 B = 0.001756 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.341638 B =15939.983647 C =16327.061562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.513 3.487 5 O -0.510 6.510 6 C -0.155 4.155 7 C -0.040 4.040 8 C -0.164 4.164 9 C 0.194 3.806 10 N -0.677 5.677 11 C 0.533 3.467 12 O -0.487 6.487 13 C -0.133 4.133 14 S -0.231 6.231 15 C 0.075 3.925 16 C -0.512 4.512 17 H 0.068 0.932 18 C 0.066 3.934 19 N -0.893 5.893 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.270 1.270 24 C -0.137 4.137 25 C -0.030 4.030 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.415 0.585 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.266 0.734 39 H 0.152 0.848 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.774 -17.705 -8.164 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.273 6.273 4 C 0.359 3.641 5 O -0.399 6.399 6 C -0.157 4.157 7 C -0.059 4.059 8 C -0.185 4.185 9 C 0.098 3.902 10 N -0.323 5.323 11 C 0.320 3.680 12 O -0.358 6.358 13 C -0.283 4.283 14 S -0.006 6.006 15 C -0.072 4.072 16 C -0.551 4.551 17 H 0.086 0.914 18 C -0.138 4.138 19 N -0.532 5.532 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.157 4.157 25 C -0.049 4.049 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.251 0.749 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.170 0.830 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.566 -19.258 -7.293 29.103 hybrid contribution -0.141 1.633 -0.388 1.684 sum -20.707 -17.626 -7.681 28.256 Atomic orbital electron populations 1.21814 0.92491 1.03065 1.03604 1.23042 0.95370 0.79970 1.02752 1.86538 1.23923 1.32462 1.84388 1.21120 0.80475 0.89921 0.72572 1.90844 1.60367 1.42525 1.46196 1.19044 0.94035 0.89861 1.12727 1.21184 1.00074 0.90781 0.93849 1.20896 0.93018 0.98052 1.06502 1.18083 0.92175 0.84906 0.95039 1.43566 1.26735 1.09691 1.52358 1.20299 0.79460 0.91102 0.77164 1.90747 1.55463 1.46266 1.43355 1.23362 1.03330 0.95628 1.06003 1.87314 1.24164 1.19923 1.69162 1.21193 1.00127 0.85271 1.00646 1.20633 1.06563 0.93966 1.33966 0.91364 1.24950 0.97927 0.95302 0.95591 1.69947 1.39685 0.99392 1.44133 0.86332 0.82594 0.77590 0.80061 1.20304 1.20970 1.19482 1.21353 1.01738 0.90460 1.02172 1.21174 0.93072 0.97705 0.92980 0.91419 0.90159 0.91377 0.91141 0.91110 0.84158 0.84641 0.74852 0.87528 0.87521 0.94523 0.94522 0.92485 0.83015 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.29 16 2 C 0.06 0.45 6.20 37.16 0.23 0.68 16 3 O -0.36 -3.36 9.46 -40.60 -0.38 -3.74 16 4 C 0.51 5.87 7.89 34.49 0.27 6.14 16 5 O -0.51 -7.08 16.13 -19.27 -0.31 -7.39 16 6 C -0.15 -1.66 5.88 -104.96 -0.62 -2.28 16 7 C -0.04 -0.35 9.60 -39.21 -0.38 -0.72 16 8 C -0.16 -1.38 9.94 -39.46 -0.39 -1.77 16 9 C 0.19 2.09 6.30 -83.74 -0.53 1.56 16 10 N -0.68 -6.89 5.31 -9.86 -0.05 -6.94 16 11 C 0.53 7.63 7.69 -10.98 -0.08 7.55 16 12 O -0.49 -8.83 13.28 5.56 0.07 -8.76 16 13 C -0.13 -1.98 6.43 36.01 0.23 -1.75 16 14 S -0.23 -4.98 20.79 -107.50 -2.24 -7.22 16 15 C 0.07 1.87 5.70 36.00 0.21 2.08 16 16 C -0.51 -14.25 9.13 -34.45 -0.31 -14.56 16 17 H 0.07 1.92 7.71 -52.49 -0.40 1.51 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 20 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.14 -1.68 8.67 -39.46 -0.34 -2.02 16 25 C -0.03 -0.35 9.58 -39.21 -0.38 -0.73 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 0.92 7.60 -52.49 -0.40 0.52 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.41 2.67 8.82 -40.82 -0.36 2.31 16 34 H 0.11 1.37 8.14 -51.92 -0.42 0.95 16 35 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.15 2.10 6.21 -52.48 -0.33 1.78 16 40 H 0.14 1.57 7.64 -52.49 -0.40 1.17 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -33.59 365.47 -8.74 -42.33 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.25 Total: -0.88 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.81 Total: -4.39 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.68 Total: -31.63 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.62 Total: -19.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.24 Total: -7.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.59 -8.74 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.310 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds