Wall clock time and date at job start Tue Mar 31 2020 14:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.47350 * 2 1 4 4 C 1.34741 * 116.99893 * 179.97438 * 3 2 1 5 5 O 1.21508 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.47467 * 119.99823 * 179.97438 * 4 3 2 7 7 C 1.39811 * 120.07862 * 0.25359 * 6 4 3 8 8 C 1.37643 * 119.91927 * 180.25049 * 7 6 4 9 9 C 1.39156 * 120.07823 * 359.49263 * 8 7 6 10 10 N 1.39410 * 119.91985 * 180.27150 * 9 8 7 11 11 C 1.34780 * 119.99722 * 144.85132 * 10 9 8 12 12 O 1.21276 * 119.99800 * 4.58173 * 11 10 9 13 13 C 1.50700 * 119.99707 * 184.58476 * 11 10 9 14 14 S 1.81398 * 109.46796 * 180.02562 * 13 11 10 15 15 C 1.81403 * 103.00278 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47587 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99860 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00348 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00205 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46780 * 90.00258 * 20 18 16 22 22 H 1.48501 * 109.47275 * 209.99686 * 20 18 16 23 23 H 1.48493 * 109.47083 * 329.99913 * 20 18 16 24 24 C 1.39143 * 120.15543 * 0.25983 * 9 8 7 25 25 C 1.37648 * 120.08444 * 359.97438 * 24 9 8 26 26 H 1.09006 * 109.46647 * 59.99921 * 1 2 3 27 27 H 1.09000 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47172 * 300.00467 * 1 2 3 29 29 H 1.08995 * 109.46920 * 240.00015 * 2 1 3 30 30 H 1.08997 * 109.46530 * 119.99847 * 2 1 3 31 31 H 1.07998 * 120.03691 * 0.02562 * 7 6 4 32 32 H 1.07995 * 119.96333 * 179.76828 * 8 7 6 33 33 H 0.96996 * 120.00352 * 324.85216 * 10 9 8 34 34 H 1.08998 * 109.47369 * 299.99697 * 13 11 10 35 35 H 1.08997 * 109.47476 * 60.00208 * 13 11 10 36 36 H 1.09006 * 109.46737 * 300.00026 * 15 14 13 37 37 H 1.09005 * 109.47063 * 59.99581 * 15 14 13 38 38 H 0.96999 * 120.00429 * 180.02562 * 19 18 16 39 39 H 1.08008 * 119.95781 * 180.02562 * 24 9 8 40 40 H 1.07998 * 120.03924 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 0.0005 5 8 4.0901 0.5818 0.0015 6 6 3.9136 2.9081 0.0000 7 6 3.0635 4.0181 0.0043 8 6 3.5931 5.2885 -0.0014 9 6 4.9729 5.4689 -0.0008 10 7 5.5058 6.7571 -0.0009 11 6 6.6450 7.0151 0.6715 12 8 7.2509 6.1114 1.2071 13 6 7.1657 8.4267 0.7579 14 16 8.7030 8.4461 1.7206 15 6 9.1667 10.1999 1.7138 16 6 10.4473 10.3840 2.4864 17 1 10.9335 9.5313 2.9370 18 6 10.9984 11.6409 2.6182 19 7 10.4067 12.6792 2.0691 20 14 12.5855 11.8692 3.5766 21 1 13.7432 11.7295 2.6572 22 1 12.6022 13.2207 4.1917 23 1 12.6725 10.8390 4.6425 24 6 5.8220 4.3665 0.0001 25 6 5.2994 3.0931 0.0010 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9925 3.8787 0.0084 32 1 2.9371 6.1464 -0.0019 33 1 5.0568 7.4677 -0.4849 34 1 7.3613 8.8039 -0.2458 35 1 6.4233 9.0587 1.2453 36 1 9.3117 10.5333 0.6861 37 1 8.3742 10.7871 2.1779 38 1 10.7945 13.5635 2.1614 39 1 6.8925 4.5102 0.0010 40 1 5.9590 2.2380 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058256302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:33 Heat of formation + Delta-G solvation = -119.650365 kcal Electronic energy + Delta-G solvation = -22816.042356 eV Core-core repulsion = 19107.253358 eV Total energy + Delta-G solvation = -3708.788997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.91109 -41.35079 -39.41007 -37.68419 -36.01898 -35.27680 -32.90262 -32.09263 -32.03474 -30.66227 -30.01917 -25.70263 -25.15035 -24.31636 -23.54604 -22.23609 -21.66019 -19.38574 -18.93980 -18.59628 -18.18898 -17.93462 -17.60927 -17.12393 -16.85947 -16.29246 -15.88597 -15.48768 -15.25208 -15.20807 -14.78851 -14.58428 -14.54038 -14.44306 -14.20760 -13.93843 -13.74454 -13.57519 -13.44650 -12.93686 -12.73504 -12.58490 -12.57479 -12.35614 -12.05430 -11.73895 -11.61969 -11.59317 -11.53346 -11.07489 -10.73440 -10.64186 -10.09955 -9.40032 -8.48339 -8.33228 -6.44997 -0.50172 0.31031 0.70847 1.16992 1.41358 1.41628 1.53992 1.55455 1.57499 1.92312 2.00182 2.37738 2.70085 3.02088 3.50617 3.62590 3.82009 3.88997 4.01470 4.07764 4.08313 4.19271 4.28059 4.29863 4.35216 4.47295 4.76843 4.92737 4.94585 4.95993 4.98120 5.02796 5.13539 5.16361 5.22260 5.30329 5.41507 5.58139 5.78863 5.90792 6.21328 6.61637 6.62961 6.93332 7.22841 8.78537 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.044836 B = 0.001756 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.341638 B =15939.983647 C =16327.061562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.515 3.485 5 O -0.544 6.544 6 C -0.163 4.163 7 C -0.029 4.029 8 C -0.145 4.145 9 C 0.181 3.819 10 N -0.653 5.653 11 C 0.537 3.463 12 O -0.533 6.533 13 C -0.115 4.115 14 S -0.273 6.273 15 C 0.084 3.916 16 C -0.539 4.539 17 H 0.057 0.943 18 C 0.020 3.980 19 N -0.921 5.921 20 Si 0.972 3.028 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.270 1.270 24 C -0.154 4.154 25 C -0.042 4.042 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.170 0.830 32 H 0.176 0.824 33 H 0.436 0.564 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.271 0.729 39 H 0.128 0.872 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.336 -17.232 -8.606 31.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.267 6.267 4 C 0.362 3.638 5 O -0.436 6.436 6 C -0.165 4.165 7 C -0.047 4.047 8 C -0.165 4.165 9 C 0.085 3.915 10 N -0.300 5.300 11 C 0.324 3.676 12 O -0.408 6.408 13 C -0.266 4.266 14 S -0.048 6.048 15 C -0.063 4.063 16 C -0.578 4.578 17 H 0.075 0.925 18 C -0.182 4.182 19 N -0.560 5.560 20 Si 0.796 3.204 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.194 1.194 24 C -0.174 4.174 25 C -0.061 4.061 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.187 0.813 32 H 0.193 0.807 33 H 0.277 0.723 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.183 -18.765 -7.766 30.820 hybrid contribution 0.483 1.374 -0.325 1.492 sum -22.701 -17.391 -8.092 29.719 Atomic orbital electron populations 1.21829 0.90021 1.04445 1.03948 1.23337 0.97241 0.78864 1.02591 1.86532 1.22551 1.33883 1.83779 1.21281 0.80975 0.89812 0.71751 1.90827 1.61238 1.43586 1.47905 1.19146 0.93854 0.90465 1.13061 1.21517 1.01171 0.89999 0.92056 1.21244 0.92009 0.99233 1.03969 1.18224 0.93138 0.84289 0.95806 1.43205 1.25280 1.10284 1.51252 1.20129 0.80187 0.90125 0.77158 1.90755 1.57111 1.47242 1.45650 1.23364 0.99937 0.96961 1.06310 1.87336 1.29129 1.16986 1.71315 1.20847 0.98904 0.87441 0.99118 1.20957 1.07986 0.94093 1.34738 0.92488 1.25798 1.01132 0.94914 0.96311 1.70024 1.41125 0.99862 1.44953 0.85340 0.78612 0.77781 0.78708 1.19493 1.19852 1.19419 1.21208 1.00986 0.91539 1.03697 1.21102 0.93794 0.97271 0.93936 0.90918 0.88284 0.91108 0.91245 0.91501 0.81273 0.80702 0.72301 0.84844 0.84814 0.95860 0.95838 0.92035 0.85427 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 71.98 0.74 -0.22 16 2 C 0.05 0.70 6.20 71.98 0.45 1.14 16 3 O -0.35 -6.10 9.46 -56.52 -0.53 -6.64 16 4 C 0.51 11.55 7.89 70.25 0.55 12.11 16 5 O -0.54 -15.49 16.13 19.81 0.32 -15.18 16 6 C -0.16 -3.36 5.88 -20.09 -0.12 -3.48 16 7 C -0.03 -0.41 9.60 22.51 0.22 -0.19 16 8 C -0.14 -1.87 9.94 22.35 0.22 -1.65 16 9 C 0.18 3.54 6.30 38.37 0.24 3.78 16 10 N -0.65 -11.58 5.31 -303.49 -1.61 -13.19 16 11 C 0.54 14.69 7.69 87.66 0.67 15.36 16 12 O -0.53 -19.56 13.28 -3.02 -0.04 -19.60 16 13 C -0.12 -3.24 6.43 71.24 0.46 -2.78 16 14 S -0.27 -11.91 20.79 -56.49 -1.17 -13.09 16 15 C 0.08 4.31 5.70 71.23 0.41 4.72 16 16 C -0.54 -30.60 9.13 25.60 0.23 -30.37 16 17 H 0.06 3.29 7.71 -2.91 -0.02 3.27 16 18 C 0.02 1.09 5.46 84.65 0.46 1.55 16 19 N -0.92 -52.63 13.29 21.44 0.28 -52.35 16 20 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C -0.15 -3.83 8.67 22.35 0.19 -3.64 16 25 C -0.04 -1.00 9.58 22.51 0.22 -0.78 16 26 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.17 1.45 7.60 -2.91 -0.02 1.43 16 32 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.44 3.88 8.82 -92.71 -0.82 3.06 16 34 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.13 3.79 6.21 -2.91 -0.02 3.78 16 40 H 0.13 3.22 7.64 -2.91 -0.02 3.20 16 Total: -1.00 -75.79 365.47 4.46 -71.33 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.25 Total: 7.64 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 4.95 Total: -4.45 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -1.33 Total: -65.54 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.26 Total: -41.42 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -11.91 SS G_CDS: -1.17 Total: -13.09 kcal Total: -75.79 4.46 -71.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.324 kcal (2) G-P(sol) polarization free energy of solvation -75.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds