Wall clock time and date at job start Tue Mar 31 2020 13:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00331 * 3 2 1 5 5 C 1.50702 * 109.46904 * 269.99929 * 4 3 2 6 6 H 1.07993 * 120.00490 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99735 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99825 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47522 * 89.99831 * 9 7 5 11 11 H 1.48508 * 109.46941 * 209.99577 * 9 7 5 12 12 H 1.48502 * 109.47592 * 329.99302 * 9 7 5 13 13 C 1.34779 * 119.99707 * 90.00663 * 3 2 1 14 14 O 1.21282 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00037 * 359.97438 * 13 3 2 16 16 O 1.42905 * 109.46972 * 180.02562 * 15 13 3 17 17 C 1.35002 * 116.99897 * 179.97438 * 16 15 13 18 18 O 1.21724 * 119.99940 * 0.02562 * 17 16 15 19 19 C 1.41208 * 120.00108 * 179.97438 * 17 16 15 20 20 C 1.35785 * 120.00349 * 180.02562 * 19 17 16 21 21 C 1.41498 * 120.00294 * 180.02562 * 20 19 17 22 22 C 1.37093 * 125.47926 * 179.71607 * 21 20 19 23 23 C 1.37392 * 113.22148 * 179.79825 * 22 21 20 24 24 C 1.33889 * 115.13204 * 0.49733 * 23 22 21 25 25 S 1.70607 * 111.01883 * 359.72349 * 24 23 22 26 26 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46447 * 299.99424 * 1 2 3 28 28 H 1.09001 * 109.47495 * 59.99636 * 1 2 3 29 29 H 1.09002 * 109.47160 * 240.00485 * 2 1 3 30 30 H 1.09001 * 109.47495 * 120.00364 * 2 1 3 31 31 H 1.08991 * 109.47410 * 30.00046 * 4 3 2 32 32 H 1.09007 * 109.47039 * 150.00320 * 4 3 2 33 33 H 0.97004 * 119.99848 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47247 * 60.00371 * 15 13 3 35 35 H 1.09001 * 109.47358 * 299.99798 * 15 13 3 36 36 H 1.07998 * 119.99843 * 0.02562 * 19 17 16 37 37 H 1.07998 * 119.99809 * 0.02562 * 20 19 17 38 38 H 1.08004 * 123.38500 * 0.02562 * 22 21 20 39 39 H 1.08003 * 122.43883 * 180.20078 * 23 22 21 40 40 H 1.08001 * 124.49268 * 179.72917 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9132 2.0966 -3.4171 10 1 5.9759 0.8761 -4.2608 11 1 6.3927 3.2642 -4.1995 12 1 6.7735 1.9157 -2.2203 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3006 2.1818 3.5585 17 6 2.1277 1.6956 4.8060 18 8 1.7255 0.5578 4.9654 19 6 2.4146 2.5065 5.9259 20 6 2.2412 2.0173 7.1807 21 6 2.5281 2.8300 8.3028 22 6 2.3889 2.4543 9.6139 23 6 2.7438 3.4415 10.5010 24 6 3.1491 4.5889 9.9426 25 16 3.1133 4.4870 8.2399 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5816 1.6879 -2.0283 32 1 2.0955 3.1412 -1.1383 33 1 3.6753 3.5172 -4.4435 34 1 2.6213 0.4185 2.5302 35 1 0.9433 1.0124 2.5300 36 1 2.7719 3.5157 5.7844 37 1 1.8843 1.0079 7.3221 38 1 2.0391 1.4789 9.9187 39 1 2.6947 3.3038 11.5711 40 1 3.4579 5.4631 10.4965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060844343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:57 Heat of formation + Delta-G solvation = -87.846797 kcal Electronic energy + Delta-G solvation = -23574.631065 eV Core-core repulsion = 19867.221174 eV Total energy + Delta-G solvation = -3707.409891 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88416 -40.59016 -39.04819 -37.81063 -36.98428 -35.23266 -34.93719 -31.77033 -31.02886 -29.97378 -28.39298 -26.33713 -24.90741 -24.25098 -23.62439 -21.30252 -20.71497 -20.26739 -18.99709 -18.67303 -18.22985 -17.86855 -17.70983 -17.41653 -16.95978 -16.37768 -16.18508 -15.87493 -14.90686 -14.76242 -14.60293 -14.47786 -14.37337 -14.02570 -13.92816 -13.64502 -13.60369 -13.40791 -13.28394 -13.07613 -12.91826 -12.68181 -12.50772 -12.22249 -12.04006 -11.84740 -11.76490 -11.70403 -11.67539 -11.59220 -10.72789 -10.64463 -9.58873 -9.54805 -9.19975 -8.23427 -6.37894 -1.02744 0.54945 0.57368 1.02084 1.36071 1.39357 1.41114 1.50640 1.60684 1.66285 2.13210 2.35098 2.50827 3.06452 3.43929 3.71251 3.89805 3.98778 3.99798 4.14715 4.15869 4.19084 4.33912 4.38474 4.55251 4.59284 4.80212 4.89196 4.94615 5.02670 5.05758 5.09468 5.18621 5.25349 5.33087 5.36301 5.46216 5.54289 5.79760 6.04011 6.54557 6.67589 6.71235 7.21037 7.36392 8.84051 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.002293 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.740074 B =12207.303378 C =13200.752507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.579 6.579 15 C 0.062 3.938 16 O -0.348 6.348 17 C 0.507 3.493 18 O -0.537 6.537 19 C -0.250 4.250 20 C 0.080 3.920 21 C -0.249 4.249 22 C -0.067 4.067 23 C -0.159 4.159 24 C -0.227 4.227 25 S 0.191 5.809 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.030 0.970 32 H -0.001 1.001 33 H 0.268 0.732 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.169 0.831 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -4.510 28.908 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.286 3.714 14 O -0.459 6.459 15 C -0.015 4.015 16 O -0.264 6.264 17 C 0.358 3.642 18 O -0.431 6.431 19 C -0.271 4.271 20 C 0.060 3.940 21 C -0.366 4.366 22 C -0.100 4.100 23 C -0.189 4.189 24 C -0.364 4.364 25 S 0.460 5.540 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.017 0.983 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.191 0.809 39 H 0.186 0.814 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.735 -3.097 27.586 28.009 hybrid contribution 0.461 -0.663 0.223 0.838 sum -3.274 -3.759 27.808 28.252 Atomic orbital electron populations 1.22174 0.94304 1.03805 1.01810 1.21869 0.95588 0.80946 1.04399 1.48210 1.63569 1.15284 1.05656 1.18796 0.95637 0.91643 0.79762 1.21695 0.97801 1.32173 1.06654 0.92807 1.25866 1.02487 0.94416 0.96411 1.70049 1.37785 1.34060 1.14772 0.85395 0.78863 0.78248 0.78177 1.18679 1.20590 1.19888 1.20589 0.78287 0.86632 0.85902 1.90671 1.47215 1.20227 1.87777 1.22408 1.04540 0.92295 0.82236 1.86283 1.79400 1.45429 1.15260 1.20049 0.74677 0.86160 0.83317 1.90859 1.45077 1.20243 1.86900 1.21079 1.13640 1.02064 0.90295 1.20890 0.85668 0.98531 0.88912 1.22654 1.16525 0.99965 0.97442 1.21432 0.96828 1.01814 0.89909 1.20368 1.03268 0.92389 1.02909 1.25821 1.06681 1.04566 0.99346 1.83649 1.59525 1.07891 1.02943 0.88316 0.92500 0.93665 0.89931 0.88447 0.95160 0.98301 0.92340 0.86816 0.86346 0.84571 0.82345 0.80851 0.81395 0.79307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.24 71.98 0.74 -3.39 16 2 C 0.09 2.91 5.93 86.38 0.51 3.43 16 3 N -0.59 -25.99 2.46 -826.15 -2.03 -28.02 16 4 C 0.26 14.39 5.16 85.63 0.44 14.83 16 5 C -0.54 -31.85 9.39 25.60 0.24 -31.60 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 9 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.50 22.30 7.75 87.66 0.68 22.98 16 14 O -0.58 -32.22 16.08 16.00 0.26 -31.96 16 15 C 0.06 2.09 4.41 71.24 0.31 2.41 16 16 O -0.35 -12.42 9.64 -52.74 -0.51 -12.92 16 17 C 0.51 15.10 7.68 68.55 0.53 15.63 16 18 O -0.54 -16.51 15.88 19.10 0.30 -16.21 16 19 C -0.25 -5.91 9.44 22.43 0.21 -5.70 16 20 C 0.08 1.44 9.36 22.50 0.21 1.65 16 21 C -0.25 -3.77 6.21 22.80 0.14 -3.63 16 22 C -0.07 -0.71 10.25 21.80 0.22 -0.48 16 23 C -0.16 -1.41 10.14 21.08 0.21 -1.19 16 24 C -0.23 -2.23 10.92 66.83 0.73 -1.50 16 25 S 0.19 2.75 21.76 -56.49 -1.23 1.52 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.38 7.22 -2.38 -0.02 1.36 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 30 H 0.10 2.40 6.44 -2.39 -0.02 2.39 16 31 H 0.03 1.66 8.07 -2.39 -0.02 1.65 16 32 H 0.00 -0.07 7.42 -2.38 -0.02 -0.09 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.11 3.31 7.39 -2.39 -0.02 3.29 16 35 H 0.12 3.31 7.17 -2.39 -0.02 3.29 16 36 H 0.14 3.16 7.04 -2.91 -0.02 3.14 16 37 H 0.16 2.48 7.45 -2.91 -0.02 2.46 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 40 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -79.60 365.15 5.80 -73.80 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.05 Total: 8.27 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 5.64 Total: 14.30 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.74 Total: -84.27 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: 0.05 Total: -61.10 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.23 Total: 1.52 kcal Total: -79.60 5.80 -73.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060844343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.048 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds