Wall clock time and date at job start Tue Mar 31 2020 13:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47158 * 2 1 4 4 C 1.37104 * 119.99845 * 264.75096 * 3 2 1 5 5 H 1.07994 * 120.00030 * 146.16398 * 4 3 2 6 6 C 1.38952 * 119.99657 * 326.15855 * 4 3 2 7 7 N 1.31405 * 120.00293 * 337.69227 * 6 4 3 8 8 Si 1.86803 * 119.99790 * 157.68480 * 6 4 3 9 9 H 1.48500 * 109.46999 * 89.99970 * 8 6 4 10 10 H 1.48495 * 109.47301 * 209.99926 * 8 6 4 11 11 H 1.48502 * 109.47176 * 330.00637 * 8 6 4 12 12 C 1.34772 * 120.00415 * 84.74245 * 3 2 1 13 13 O 1.21293 * 120.00017 * 180.02562 * 12 3 2 14 14 C 1.50697 * 119.99782 * 0.02562 * 12 3 2 15 15 S 1.81398 * 109.47271 * 179.97438 * 14 12 3 16 16 C 1.76202 * 103.00132 * 179.97438 * 15 14 12 17 17 C 1.38919 * 120.02794 * 359.97438 * 16 15 14 18 18 C 1.38128 * 120.02436 * 179.75093 * 17 16 15 19 19 C 1.38715 * 120.17637 * 0.22826 * 18 17 16 20 20 C 1.38989 * 119.94652 * 359.96029 * 19 18 17 21 21 C 1.38653 * 119.89454 * 0.12191 * 20 19 18 22 22 O 1.36113 * 120.78214 * 180.20368 * 20 19 18 23 23 C 1.43177 * 116.71779 * 342.71876 * 22 20 19 24 24 C 1.53467 * 108.22944 * 46.28014 * 23 22 20 25 25 O 1.36234 * 119.30704 * 179.82836 * 19 18 17 26 26 H 1.09003 * 109.46963 * 300.00241 * 1 2 3 27 27 H 1.08999 * 109.46785 * 60.00482 * 1 2 3 28 28 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47318 * 239.99813 * 2 1 3 30 30 H 1.09002 * 109.47239 * 119.99749 * 2 1 3 31 31 H 0.97000 * 120.00454 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.47471 * 59.99250 * 14 12 3 33 33 H 1.09007 * 109.47298 * 299.99358 * 14 12 3 34 34 H 1.07996 * 119.98615 * 0.03275 * 17 16 15 35 35 H 1.07995 * 119.91373 * 180.24743 * 18 17 16 36 36 H 1.08003 * 119.99108 * 179.88704 * 21 20 19 37 37 H 1.09007 * 109.71031 * 286.59632 * 23 22 20 38 38 H 1.08995 * 109.71543 * 165.96590 * 23 22 20 39 39 H 1.09004 * 109.70918 * 180.53847 * 24 23 22 40 40 H 1.08992 * 109.74715 * 59.93682 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3493 1.9913 -1.1824 5 1 2.1814 3.0506 -1.3089 6 6 2.9007 1.2466 -2.2178 7 7 3.5051 0.1088 -1.9594 8 14 2.7825 1.8629 -3.9773 9 1 3.9648 2.7066 -4.2867 10 1 2.7444 0.7048 -4.9060 11 1 1.5447 2.6674 -4.1380 12 6 2.1422 2.0523 1.1622 13 8 2.5461 3.1960 1.1621 14 6 1.7788 1.3816 2.4619 15 16 2.0532 2.5349 3.8349 16 6 1.5816 1.5908 5.2459 17 6 1.1339 0.2849 5.0906 18 6 0.7691 -0.4569 6.1972 19 6 0.8437 0.1001 7.4655 20 6 1.2874 1.4076 7.6240 21 6 1.6521 2.1531 6.5133 22 8 1.3712 1.9697 8.8609 23 6 0.6446 1.3238 9.9120 24 6 0.9152 -0.1844 9.8262 25 8 0.4761 -0.6463 8.5442 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8904 -0.4109 -2.6822 32 1 2.4008 0.4972 2.6008 33 1 0.7294 1.0876 2.4381 34 1 1.0755 -0.1520 4.1047 35 1 0.4251 -1.4732 6.0748 36 1 1.9954 3.1699 6.6345 37 1 -0.4221 1.5134 9.7919 38 1 0.9795 1.7031 10.8774 39 1 0.3646 -0.7019 10.6118 40 1 1.9825 -0.3741 9.9395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:48 Heat of formation + Delta-G solvation = -88.214199 kcal Electronic energy + Delta-G solvation = -24307.320550 eV Core-core repulsion = 20599.894727 eV Total energy + Delta-G solvation = -3707.425823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19997 -40.45168 -38.71668 -38.24740 -36.98524 -34.14556 -32.37259 -31.81889 -31.27906 -30.88848 -29.39097 -26.70629 -25.77963 -24.16184 -23.87623 -22.08637 -21.12804 -19.86699 -18.81337 -18.70129 -18.24584 -17.94745 -17.35231 -16.90479 -16.47898 -16.16834 -15.96620 -15.82352 -15.41421 -15.29189 -15.06891 -14.86556 -14.62458 -14.51996 -14.20788 -13.92322 -13.64555 -13.36973 -13.14433 -12.99922 -12.85166 -12.68902 -12.46739 -12.27668 -12.09536 -11.99526 -11.83552 -11.57307 -11.11041 -10.91089 -10.52831 -10.18853 -9.53612 -9.49258 -8.38212 -8.29140 -6.06993 0.07249 0.19170 0.32308 1.36339 1.42367 1.43046 1.55161 1.92141 2.01502 2.27829 2.31246 2.53577 2.97259 2.98899 3.27134 3.64780 3.84213 3.95181 4.00861 4.02533 4.08054 4.11410 4.19065 4.35106 4.41543 4.52887 4.59972 4.62208 4.73690 4.83072 4.89017 5.02288 5.05344 5.17043 5.31535 5.41053 5.44752 5.56819 5.85994 6.15679 6.36412 6.46439 7.11753 7.39002 7.96670 8.64451 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.032922 B = 0.002594 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.282358 B =10793.570397 C =11341.448122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.089 3.911 3 N -0.442 5.442 4 C -0.342 4.342 5 H 0.065 0.935 6 C 0.006 3.994 7 N -0.884 5.884 8 Si 0.981 3.019 9 H -0.279 1.279 10 H -0.265 1.265 11 H -0.268 1.268 12 C 0.455 3.545 13 O -0.615 6.615 14 C -0.116 4.116 15 S -0.075 6.075 16 C -0.095 4.095 17 C -0.134 4.134 18 C -0.090 4.090 19 C 0.035 3.965 20 C 0.064 3.936 21 C -0.111 4.111 22 O -0.323 6.323 23 C 0.013 3.987 24 C 0.014 3.986 25 O -0.318 6.318 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.276 0.724 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 -7.202 21.283 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.034 4.034 3 N -0.160 5.160 4 C -0.470 4.470 5 H 0.083 0.917 6 C -0.197 4.197 7 N -0.521 5.521 8 Si 0.804 3.196 9 H -0.205 1.205 10 H -0.189 1.189 11 H -0.192 1.192 12 C 0.243 3.757 13 O -0.502 6.502 14 C -0.267 4.267 15 S 0.169 5.831 16 C -0.209 4.209 17 C -0.158 4.158 18 C -0.111 4.111 19 C -0.013 4.013 20 C 0.017 3.983 21 C -0.136 4.136 22 O -0.238 6.238 23 C -0.062 4.062 24 C -0.060 4.060 25 O -0.233 6.233 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.154 0.846 37 H 0.100 0.900 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.650 -5.677 21.018 23.076 hybrid contribution -0.151 -0.804 -0.720 1.090 sum -7.801 -6.481 20.298 22.691 Atomic orbital electron populations 1.22122 0.95072 1.02758 1.01398 1.21809 0.94271 0.83092 1.04233 1.43723 1.55097 1.13189 1.04029 1.19398 1.42243 0.95016 0.90388 0.91681 1.26059 0.93336 0.96528 1.03774 1.69967 1.31937 1.15776 1.34411 0.85141 0.78780 0.78292 0.77366 1.20517 1.18928 1.19216 1.20162 0.82582 0.87695 0.85218 1.90529 1.52211 1.20413 1.87041 1.23734 1.07486 1.01787 0.93674 1.86359 1.81946 1.19755 0.95009 1.21761 1.04265 0.98094 0.96736 1.21206 1.01812 0.92644 1.00092 1.20574 1.00804 1.01258 0.88416 1.18966 1.03696 0.89390 0.89212 1.18682 1.02682 0.91008 0.85918 1.19930 1.04909 1.00436 0.88316 1.86292 1.69071 1.53211 1.15214 1.24022 0.97666 0.93208 0.91263 1.23971 1.02632 0.95530 0.83911 1.86310 1.72862 1.49838 1.14279 0.92723 0.93942 0.89311 0.88861 0.91201 0.91436 0.86047 0.85347 0.83565 0.82197 0.84595 0.90030 0.82735 0.82521 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 10.15 71.98 0.73 -4.29 16 2 C 0.09 3.62 5.43 86.38 0.47 4.09 16 3 N -0.44 -22.17 2.56 -635.54 -1.63 -23.80 16 4 C -0.34 -19.20 8.98 84.04 0.75 -18.45 16 5 H 0.07 3.94 7.70 -2.91 -0.02 3.92 16 6 C 0.01 0.32 4.92 84.93 0.42 0.74 16 7 N -0.88 -46.31 11.33 21.66 0.25 -46.07 16 8 Si 0.98 41.60 29.61 68.60 2.03 43.63 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 C 0.46 22.46 7.61 87.66 0.67 23.12 16 13 O -0.62 -35.77 15.69 -3.07 -0.05 -35.82 16 14 C -0.12 -4.20 3.42 71.23 0.24 -3.96 16 15 S -0.07 -2.73 21.06 -56.49 -1.19 -3.92 16 16 C -0.10 -2.84 6.10 22.58 0.14 -2.70 16 17 C -0.13 -3.38 9.36 22.41 0.21 -3.17 16 18 C -0.09 -2.04 9.95 22.36 0.22 -1.82 16 19 C 0.03 0.83 6.50 22.56 0.15 0.98 16 20 C 0.06 1.65 6.49 22.55 0.15 1.79 16 21 C -0.11 -3.18 9.70 22.51 0.22 -2.96 16 22 O -0.32 -7.17 10.42 -82.61 -0.86 -8.03 16 23 C 0.01 0.16 7.26 72.14 0.52 0.68 16 24 C 0.01 0.16 7.26 72.14 0.52 0.68 16 25 O -0.32 -6.28 10.42 -84.01 -0.88 -7.15 16 26 H 0.05 1.61 6.60 -2.39 -0.02 1.60 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.09 4.27 5.34 -2.39 -0.01 4.25 16 30 H 0.07 2.47 6.66 -2.39 -0.02 2.45 16 31 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 32 H 0.12 3.93 7.02 -2.39 -0.02 3.92 16 33 H 0.13 3.90 6.14 -2.39 -0.01 3.89 16 34 H 0.15 3.25 5.87 -2.91 -0.02 3.24 16 35 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.16 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.84 344.13 4.16 -68.67 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.07 Total: 17.74 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.41 Total: -5.27 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.38 Total: -69.87 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -1.78 Total: -51.00 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -1.19 Total: -3.92 kcal Total: -72.84 4.16 -68.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.540 kcal (2) G-P(sol) polarization free energy of solvation -72.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds