Wall clock time and date at job start Tue Mar 31 2020 13:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 116.99983 * 2 1 4 4 O 1.20817 * 120.00469 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99629 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47292 * 324.99353 * 5 3 2 7 7 C 1.52993 * 109.47494 * 84.99712 * 5 3 2 8 8 S 1.81407 * 109.46869 * 204.99821 * 5 3 2 9 9 C 1.81392 * 102.99845 * 175.00027 * 8 5 3 10 10 C 1.50704 * 109.47235 * 180.02562 * 9 8 5 11 11 O 1.21280 * 119.99747 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00410 * 180.02562 * 10 9 8 13 13 C 1.39236 * 120.00133 * 185.17093 * 12 10 9 14 14 C 1.39485 * 119.83251 * 144.29578 * 13 12 10 15 15 C 1.36377 * 120.16457 * 180.21127 * 14 13 12 16 16 C 1.40869 * 119.82692 * 359.51681 * 15 14 13 17 17 C 1.41155 * 120.16095 * 180.27569 * 16 15 14 18 18 H 1.08006 * 120.00183 * 335.07728 * 17 16 15 19 19 C 1.39897 * 120.00032 * 155.07636 * 17 16 15 20 20 N 1.30868 * 120.00067 * 341.96772 * 19 17 16 21 21 Si 1.86805 * 119.99985 * 161.96669 * 19 17 16 22 22 H 1.48504 * 109.47173 * 94.98317 * 21 19 17 23 23 H 1.48498 * 109.47115 * 214.98027 * 21 19 17 24 24 H 1.48492 * 109.47183 * 334.98303 * 21 19 17 25 25 C 1.40863 * 119.67492 * 0.25720 * 16 15 14 26 26 C 1.36371 * 119.83051 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47565 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47526 * 300.00845 * 1 2 3 29 29 H 1.09004 * 109.47185 * 60.00553 * 1 2 3 30 30 H 1.08994 * 109.47314 * 179.97438 * 7 5 3 31 31 H 1.09002 * 109.47253 * 300.00234 * 7 5 3 32 32 H 1.09003 * 109.47145 * 59.99550 * 7 5 3 33 33 H 1.09003 * 109.47328 * 59.99953 * 9 8 5 34 34 H 1.09007 * 109.47418 * 299.99681 * 9 8 5 35 35 H 0.97001 * 119.99463 * 5.16372 * 12 10 9 36 36 H 1.08001 * 119.91840 * 0.02562 * 14 13 12 37 37 H 1.08000 * 120.07917 * 179.79780 * 15 14 13 38 38 H 0.97001 * 120.00312 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.08274 * 180.02562 * 25 16 15 40 40 H 1.08000 * 119.92245 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9730 0.4532 0.5905 7 6 4.0828 1.1755 -1.4361 8 16 4.0888 2.8545 0.7232 9 6 5.8953 2.7004 0.7782 10 6 6.4889 3.9552 1.3649 11 8 5.7646 4.8641 1.7114 12 7 7.8248 4.0678 1.5037 13 6 8.3671 5.1793 2.1433 14 6 9.5052 5.0365 2.9369 15 6 10.0395 6.1199 3.5700 16 6 9.4449 7.3872 3.4125 17 6 9.9955 8.5143 4.0598 18 1 10.5838 8.3881 4.9568 19 6 9.7792 9.7948 3.5396 20 7 9.3868 9.9395 2.2995 21 14 10.0505 11.2980 4.6149 22 1 11.4211 11.8247 4.3928 23 1 9.0557 12.3433 4.2645 24 1 9.8904 10.9209 6.0422 25 6 8.2984 7.5242 2.6056 26 6 7.7727 6.4309 1.9827 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 5.1713 1.2329 -1.4357 31 1 3.7689 0.2263 -1.8704 32 1 3.6762 1.9970 -2.0260 33 1 6.2785 2.5546 -0.2318 34 1 6.1685 1.8458 1.3973 35 1 8.4084 3.3744 1.1580 36 1 9.9628 4.0651 3.0528 37 1 10.9189 6.0072 4.1867 38 1 9.2365 10.8274 1.9388 39 1 7.8375 8.4928 2.4800 40 1 6.8940 6.5343 1.3634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078694584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:11 Heat of formation + Delta-G solvation = -92.891706 kcal Electronic energy + Delta-G solvation = -23389.887843 eV Core-core repulsion = 19682.259188 eV Total energy + Delta-G solvation = -3707.628655 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79822 -39.63968 -37.25767 -36.87473 -34.51291 -33.86768 -33.01814 -30.47583 -29.45315 -28.56725 -28.18505 -25.11752 -24.83452 -21.74194 -21.42709 -21.06161 -19.68237 -18.15564 -17.69148 -17.33298 -16.82819 -16.64407 -16.46663 -15.90166 -15.47124 -15.08917 -14.52520 -14.09885 -14.03241 -13.95465 -13.65140 -13.32548 -12.92736 -12.76664 -12.68976 -12.51389 -12.24182 -12.15564 -12.02577 -11.82682 -11.34453 -11.17477 -11.13268 -11.07752 -10.78693 -10.68479 -10.00955 -10.00193 -9.71132 -9.45356 -9.05944 -8.92223 -7.80774 -7.53613 -7.04419 -6.75765 -4.31426 0.93345 1.83385 2.21716 2.39054 2.52324 2.94776 3.07596 3.10052 3.13324 3.28783 3.64552 3.92854 4.27268 4.33359 4.56611 4.60458 4.73472 4.82272 4.85865 4.89143 5.03916 5.11659 5.14859 5.24729 5.60522 5.69910 5.94689 6.12067 6.39141 6.75954 6.96190 7.03135 7.13048 7.26867 7.33948 7.57742 7.63841 7.93149 8.04580 8.15742 8.28166 8.60968 8.68189 8.86955 8.98205 10.16326 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.002133 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.450681 B =13125.813361 C =13668.517551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.483 3.517 4 O -0.480 6.480 5 C -0.095 4.095 6 H 0.120 0.880 7 C -0.144 4.144 8 S -0.098 6.098 9 C -0.141 4.141 10 C 0.514 3.486 11 O -0.508 6.508 12 N -0.644 5.644 13 C -0.013 4.013 14 C -0.101 4.101 15 C -0.217 4.217 16 C 0.107 3.893 17 C -0.457 4.457 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.788 5.788 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.260 1.260 25 C -0.158 4.158 26 C -0.083 4.083 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.395 0.605 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.282 0.718 39 H 0.120 0.880 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 -19.538 -7.276 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.323 3.677 4 O -0.366 6.366 5 C -0.225 4.225 6 H 0.138 0.862 7 C -0.203 4.203 8 S 0.128 5.872 9 C -0.292 4.292 10 C 0.299 3.701 11 O -0.384 6.384 12 N -0.288 5.288 13 C -0.105 4.105 14 C -0.121 4.121 15 C -0.237 4.237 16 C 0.104 3.896 17 C -0.486 4.486 18 H 0.097 0.903 19 C -0.144 4.144 20 N -0.413 5.413 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.184 1.184 25 C -0.178 4.178 26 C -0.103 4.103 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.228 0.772 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.137 0.863 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.006 -17.559 -6.866 21.831 hybrid contribution 1.117 -0.798 -0.190 1.386 sum -9.888 -18.357 -7.056 22.012 Atomic orbital electron populations 1.23331 0.75704 1.03882 1.02933 1.86473 1.23798 1.32784 1.84249 1.22580 0.90252 0.81819 0.73034 1.90743 1.66387 1.36003 1.43428 1.23084 0.92051 1.04003 1.03338 0.86230 1.22035 1.02289 1.03945 0.91994 1.88296 1.01093 1.16752 1.81102 1.23680 0.97729 1.01924 1.05878 1.19461 0.82950 0.87473 0.80254 1.90760 1.59482 1.39589 1.48528 1.42785 1.05491 1.23158 1.57324 1.17133 1.01074 0.85779 1.06561 1.20028 0.96679 0.97374 0.98005 1.20528 1.02221 0.93562 1.07392 1.17684 0.89887 0.91890 0.90108 1.19560 1.28693 0.90447 1.09916 0.90325 1.25942 0.92769 1.01039 0.94635 1.69844 1.32982 1.25514 1.12933 0.86306 0.78791 0.80290 0.81408 1.19581 1.19964 1.18377 1.20987 0.97029 0.97558 1.02189 1.20549 0.98992 0.91047 0.99748 0.87834 0.91556 0.91682 0.90494 0.90797 0.90336 0.87192 0.87218 0.77179 0.89189 0.88598 0.90746 0.86260 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.26 10.56 -39.24 -0.41 -3.68 16 3 C 0.48 5.41 7.08 36.01 0.25 5.66 16 4 O -0.48 -7.02 15.89 -18.74 -0.30 -7.32 16 5 C -0.10 -0.89 3.29 -27.88 -0.09 -0.98 16 6 H 0.12 0.83 8.14 -51.92 -0.42 0.41 16 7 C -0.14 -1.01 9.08 37.15 0.34 -0.67 16 8 S -0.10 -1.34 19.59 -107.50 -2.11 -3.45 16 9 C -0.14 -1.59 6.12 36.01 0.22 -1.37 16 10 C 0.51 8.76 7.68 -10.98 -0.08 8.68 16 11 O -0.51 -11.20 13.30 5.56 0.07 -11.12 16 12 N -0.64 -10.86 5.30 -9.74 -0.05 -10.91 16 13 C -0.01 -0.29 6.30 -83.57 -0.53 -0.82 16 14 C -0.10 -2.18 9.90 -39.79 -0.39 -2.57 16 15 C -0.22 -5.22 9.74 -39.26 -0.38 -5.61 16 16 C 0.11 2.87 5.57 -106.80 -0.59 2.28 16 17 C -0.46 -12.12 9.03 -37.85 -0.34 -12.46 16 18 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 19 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 20 N -0.79 -20.55 10.99 55.54 0.61 -19.94 16 21 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 C -0.16 -4.25 8.64 -39.26 -0.34 -4.59 16 26 C -0.08 -2.09 8.61 -39.79 -0.34 -2.43 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.46 8.13 -51.93 -0.42 0.03 16 29 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 30 H 0.08 0.42 6.92 -51.93 -0.36 0.07 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.91 7.14 -51.92 -0.37 0.54 16 34 H 0.11 0.93 8.14 -51.92 -0.42 0.50 16 35 H 0.39 4.92 8.82 -40.82 -0.36 4.56 16 36 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 39 H 0.12 3.35 6.19 -52.49 -0.32 3.02 16 40 H 0.11 2.71 6.24 -52.49 -0.33 2.38 16 LS Contribution 357.89 15.07 5.39 5.39 Total: -1.00 -33.58 357.89 -8.23 -41.81 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.10 Total: 7.29 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.31 Total: -11.79 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.56 Total: -30.85 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.64 Total: -22.12 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.11 Total: -3.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.58 -8.23 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078694584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.086 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds