Wall clock time and date at job start Tue Mar 31 2020 13:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 116.99983 * 2 1 4 4 O 1.20817 * 120.00469 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99629 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47292 * 324.99353 * 5 3 2 7 7 C 1.52993 * 109.47494 * 84.99712 * 5 3 2 8 8 S 1.81407 * 109.46869 * 204.99821 * 5 3 2 9 9 C 1.81392 * 102.99845 * 175.00027 * 8 5 3 10 10 C 1.50704 * 109.47235 * 180.02562 * 9 8 5 11 11 O 1.21280 * 119.99747 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00410 * 180.02562 * 10 9 8 13 13 C 1.39236 * 120.00133 * 185.17093 * 12 10 9 14 14 C 1.39485 * 119.83251 * 144.29578 * 13 12 10 15 15 C 1.36377 * 120.16457 * 180.21127 * 14 13 12 16 16 C 1.40869 * 119.82692 * 359.51681 * 15 14 13 17 17 C 1.41155 * 120.16095 * 180.27569 * 16 15 14 18 18 H 1.08006 * 120.00183 * 335.07728 * 17 16 15 19 19 C 1.39897 * 120.00032 * 155.07636 * 17 16 15 20 20 N 1.30868 * 120.00067 * 341.96772 * 19 17 16 21 21 Si 1.86805 * 119.99985 * 161.96669 * 19 17 16 22 22 H 1.48504 * 109.47173 * 94.98317 * 21 19 17 23 23 H 1.48498 * 109.47115 * 214.98027 * 21 19 17 24 24 H 1.48492 * 109.47183 * 334.98303 * 21 19 17 25 25 C 1.40863 * 119.67492 * 0.25720 * 16 15 14 26 26 C 1.36371 * 119.83051 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47565 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47526 * 300.00845 * 1 2 3 29 29 H 1.09004 * 109.47185 * 60.00553 * 1 2 3 30 30 H 1.08994 * 109.47314 * 179.97438 * 7 5 3 31 31 H 1.09002 * 109.47253 * 300.00234 * 7 5 3 32 32 H 1.09003 * 109.47145 * 59.99550 * 7 5 3 33 33 H 1.09003 * 109.47328 * 59.99953 * 9 8 5 34 34 H 1.09007 * 109.47418 * 299.99681 * 9 8 5 35 35 H 0.97001 * 119.99463 * 5.16372 * 12 10 9 36 36 H 1.08001 * 119.91840 * 0.02562 * 14 13 12 37 37 H 1.08000 * 120.07917 * 179.79780 * 15 14 13 38 38 H 0.97001 * 120.00312 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.08274 * 180.02562 * 25 16 15 40 40 H 1.08000 * 119.92245 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9730 0.4532 0.5905 7 6 4.0828 1.1755 -1.4361 8 16 4.0888 2.8545 0.7232 9 6 5.8953 2.7004 0.7782 10 6 6.4889 3.9552 1.3649 11 8 5.7646 4.8641 1.7114 12 7 7.8248 4.0678 1.5037 13 6 8.3671 5.1793 2.1433 14 6 9.5052 5.0365 2.9369 15 6 10.0395 6.1199 3.5700 16 6 9.4449 7.3872 3.4125 17 6 9.9955 8.5143 4.0598 18 1 10.5838 8.3881 4.9568 19 6 9.7792 9.7948 3.5396 20 7 9.3868 9.9395 2.2995 21 14 10.0505 11.2980 4.6149 22 1 11.4211 11.8247 4.3928 23 1 9.0557 12.3433 4.2645 24 1 9.8904 10.9209 6.0422 25 6 8.2984 7.5242 2.6056 26 6 7.7727 6.4309 1.9827 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 5.1713 1.2329 -1.4357 31 1 3.7689 0.2263 -1.8704 32 1 3.6762 1.9970 -2.0260 33 1 6.2785 2.5546 -0.2318 34 1 6.1685 1.8458 1.3973 35 1 8.4084 3.3744 1.1580 36 1 9.9628 4.0651 3.0528 37 1 10.9189 6.0072 4.1867 38 1 9.2365 10.8274 1.9388 39 1 7.8375 8.4928 2.4800 40 1 6.8940 6.5343 1.3634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078694584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:10 Heat of formation + Delta-G solvation = -114.192477 kcal Electronic energy + Delta-G solvation = -23390.811514 eV Core-core repulsion = 19682.259188 eV Total energy + Delta-G solvation = -3708.552326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61881 -41.15645 -39.04016 -37.68583 -36.21890 -34.80751 -34.51151 -31.88561 -31.31061 -30.12830 -28.79251 -26.64516 -25.73539 -23.35998 -22.96969 -22.24098 -21.22996 -19.27899 -19.06289 -18.72588 -18.01085 -17.83144 -17.48891 -17.07056 -16.81370 -16.49192 -15.77401 -15.30321 -15.25369 -14.91006 -14.78516 -14.66360 -14.38958 -13.99281 -13.86122 -13.69289 -13.58090 -13.21426 -13.17246 -12.94823 -12.83477 -12.77989 -12.75418 -12.40225 -11.88677 -11.77646 -11.62478 -11.52480 -11.16926 -10.84253 -10.82805 -10.61750 -9.45053 -8.91438 -8.79752 -8.61333 -6.27857 0.05095 0.80992 1.00446 1.15012 1.36911 1.37152 1.42661 1.52964 1.67455 1.74781 2.19959 2.33774 2.74098 3.58903 3.70906 3.72447 3.81447 3.95367 4.08895 4.24201 4.27174 4.29210 4.45060 4.49402 4.63679 4.67613 4.71455 4.98643 5.10057 5.10666 5.18659 5.21816 5.29797 5.42982 5.68494 5.86497 6.08209 6.10167 6.33769 6.54209 6.66719 6.69614 6.92047 7.00606 7.38440 8.31871 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.002133 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.450681 B =13125.813361 C =13668.517551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.481 3.519 4 O -0.525 6.525 5 C -0.071 4.071 6 H 0.153 0.847 7 C -0.142 4.142 8 S -0.199 6.199 9 C -0.110 4.110 10 C 0.509 3.491 11 O -0.564 6.564 12 N -0.634 5.634 13 C 0.004 3.996 14 C -0.094 4.094 15 C -0.225 4.225 16 C 0.073 3.927 17 C -0.494 4.494 18 H 0.082 0.918 19 C 0.030 3.970 20 N -0.825 5.825 21 Si 0.982 3.018 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.258 1.258 25 C -0.185 4.185 26 C -0.100 4.100 27 H 0.139 0.861 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.422 0.578 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.287 0.713 39 H 0.093 0.907 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 -23.178 -7.652 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.323 3.677 4 O -0.414 6.414 5 C -0.200 4.200 6 H 0.171 0.829 7 C -0.200 4.200 8 S 0.027 5.973 9 C -0.261 4.261 10 C 0.296 3.704 11 O -0.443 6.443 12 N -0.280 5.280 13 C -0.089 4.089 14 C -0.114 4.114 15 C -0.245 4.245 16 C 0.070 3.930 17 C -0.523 4.523 18 H 0.100 0.900 19 C -0.184 4.184 20 N -0.451 5.451 21 Si 0.803 3.197 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.181 1.181 25 C -0.205 4.205 26 C -0.120 4.120 27 H 0.157 0.843 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.260 0.740 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.856 -21.277 -7.269 24.550 hybrid contribution 0.627 0.094 -0.162 0.654 sum -9.229 -21.184 -7.431 24.272 Atomic orbital electron populations 1.23621 0.74339 1.06087 1.02531 1.86472 1.25151 1.31523 1.83600 1.23066 0.91174 0.81696 0.71779 1.90732 1.67514 1.37537 1.45609 1.23083 0.90633 1.01391 1.04899 0.82903 1.22082 1.03605 1.04367 0.89979 1.88740 1.04510 1.21636 1.82383 1.23515 0.94716 0.99420 1.08420 1.20444 0.82411 0.88645 0.78875 1.90762 1.60788 1.42172 1.50557 1.42651 1.06179 1.22251 1.56899 1.17192 1.00305 0.86155 1.05297 1.20422 0.95948 0.98774 0.96227 1.20828 1.02647 0.93299 1.07680 1.18023 0.90333 0.93616 0.90981 1.19826 1.30261 0.91578 1.10648 0.90039 1.26836 0.92073 1.03847 0.95684 1.69916 1.34146 1.26487 1.14576 0.85190 0.79158 0.76157 0.79210 1.18246 1.19529 1.18120 1.20865 0.98149 0.97218 1.04296 1.20578 0.99003 0.92414 1.00030 0.84277 0.92346 0.91834 0.88141 0.88540 0.92161 0.83174 0.83017 0.73971 0.84268 0.87048 0.90234 0.88943 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.71 10.56 -51.36 -0.54 -6.25 16 3 C 0.48 10.19 7.08 71.24 0.50 10.69 16 4 O -0.53 -15.67 15.89 21.99 0.35 -15.32 16 5 C -0.07 -1.12 3.29 29.85 0.10 -1.02 16 6 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 7 C -0.14 -1.48 9.08 71.98 0.65 -0.83 16 8 S -0.20 -5.20 19.59 -56.49 -1.11 -6.31 16 9 C -0.11 -2.06 6.12 71.24 0.44 -1.62 16 10 C 0.51 16.36 7.68 87.66 0.67 17.03 16 11 O -0.56 -25.26 13.30 -3.03 -0.04 -25.31 16 12 N -0.63 -19.46 5.30 -303.11 -1.61 -21.07 16 13 C 0.00 0.18 6.30 38.57 0.24 0.42 16 14 C -0.09 -3.82 9.90 22.14 0.22 -3.60 16 15 C -0.22 -10.70 9.74 22.48 0.22 -10.48 16 16 C 0.07 4.05 5.57 -21.28 -0.12 3.93 16 17 C -0.49 -27.16 9.03 23.39 0.21 -26.95 16 18 H 0.08 4.24 7.91 -2.91 -0.02 4.22 16 19 C 0.03 1.58 5.13 85.24 0.44 2.02 16 20 N -0.83 -45.20 10.99 21.82 0.24 -44.96 16 21 Si 0.98 39.45 29.60 68.60 2.03 41.48 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 25 C -0.19 -10.55 8.64 22.48 0.19 -10.36 16 26 C -0.10 -5.19 8.61 22.13 0.19 -5.00 16 27 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 30 H 0.10 0.59 6.92 -2.39 -0.02 0.57 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.15 1.66 7.14 -2.39 -0.02 1.64 16 34 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.42 8.43 8.82 -92.71 -0.82 7.61 16 36 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 39 H 0.09 5.63 6.19 -2.91 -0.02 5.61 16 40 H 0.09 5.00 6.24 -2.91 -0.02 4.98 16 Total: -1.00 -81.24 357.89 4.74 -76.50 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.26 Total: 25.48 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 5.16 Total: -24.25 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -1.37 Total: -66.03 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.23 Total: -46.87 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.11 Total: -6.31 kcal Total: -81.24 4.74 -76.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078694584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.688 kcal (2) G-P(sol) polarization free energy of solvation -81.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds