Wall clock time and date at job start Tue Mar 31 2020 14:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47288 * 2 1 4 4 C 1.34230 * 117.00463 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99331 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00286 * 180.02562 * 4 3 2 7 7 S 1.81397 * 109.46915 * 179.97438 * 6 4 3 8 8 C 1.81401 * 102.99816 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.47126 * 180.02562 * 8 7 6 10 10 O 1.21276 * 119.99579 * 354.83761 * 9 8 7 11 11 N 1.34778 * 119.99824 * 174.84329 * 9 8 7 12 12 C 1.37142 * 120.00088 * 5.67568 * 11 9 8 13 13 H 1.07994 * 120.00120 * 55.66883 * 12 11 9 14 14 C 1.38882 * 119.99783 * 235.66404 * 12 11 9 15 15 N 1.31424 * 120.00170 * 9.25079 * 14 12 11 16 16 Si 1.86805 * 120.00198 * 189.24869 * 14 12 11 17 17 H 1.48507 * 109.46835 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47114 * 119.99900 * 16 14 12 19 19 H 1.48497 * 109.47091 * 240.00514 * 16 14 12 20 20 C 1.39790 * 119.99838 * 185.67125 * 11 9 8 21 21 C 1.38959 * 120.07739 * 175.18889 * 20 11 9 22 22 C 1.38080 * 119.91795 * 179.97438 * 21 20 11 23 23 C 1.38308 * 120.08470 * 0.02562 * 22 21 20 24 24 C 1.38311 * 120.15006 * 359.97438 * 23 22 21 25 25 C 1.38079 * 120.08086 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47319 * 300.00455 * 1 2 3 27 27 H 1.09001 * 109.46946 * 59.99955 * 1 2 3 28 28 H 1.08998 * 109.47316 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47072 * 240.00468 * 2 1 3 30 30 H 1.09001 * 109.46946 * 120.00045 * 2 1 3 31 31 H 1.08995 * 109.47238 * 59.99712 * 6 4 3 32 32 H 1.09002 * 109.47059 * 299.99941 * 6 4 3 33 33 H 1.08993 * 109.47598 * 60.00134 * 8 7 6 34 34 H 1.09000 * 109.47043 * 299.99869 * 8 7 6 35 35 H 0.96996 * 120.00296 * 184.97981 * 15 14 12 36 36 H 1.07999 * 120.03828 * 359.71039 * 21 20 11 37 37 H 1.08006 * 119.95690 * 179.97438 * 22 21 20 38 38 H 1.07991 * 119.92287 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.95893 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.04142 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 16 5.7322 2.8424 0.0025 8 6 6.2322 4.5862 0.0024 9 6 7.7365 4.6774 0.0028 10 8 8.4050 3.6700 0.0978 11 7 8.3388 5.8786 -0.1021 12 6 7.5873 7.0257 -0.0921 13 1 6.9162 7.2245 0.7304 14 6 7.6893 7.9318 -1.1396 15 7 8.3617 7.6115 -2.2225 16 14 6.8707 9.6059 -1.0097 17 1 6.1813 9.7194 0.3008 18 1 7.9003 10.6703 -1.1206 19 1 5.8803 9.7591 -2.1054 20 6 9.7295 5.9551 -0.2211 21 6 10.3441 7.1838 -0.4297 22 6 11.7181 7.2557 -0.5462 23 6 12.4826 6.1066 -0.4561 24 6 11.8742 4.8819 -0.2486 25 6 10.5007 4.8025 -0.1311 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5845 3.4693 0.8911 32 1 3.5851 3.4698 -0.8888 33 1 5.8379 5.0774 0.8918 34 1 5.8391 5.0768 -0.8881 35 1 8.4944 8.2689 -2.9232 36 1 9.7474 8.0809 -0.5048 37 1 12.1964 8.2103 -0.7087 38 1 13.5569 6.1657 -0.5480 39 1 12.4741 3.9867 -0.1783 40 1 10.0262 3.8459 0.0305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078971572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:36 Heat of formation + Delta-G solvation = -81.732857 kcal Electronic energy + Delta-G solvation = -24118.157746 eV Core-core repulsion = 20411.012975 eV Total energy + Delta-G solvation = -3707.144771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57321 -41.46070 -38.95435 -37.79206 -36.87312 -33.85076 -32.96532 -31.94259 -31.34340 -31.05100 -29.41081 -27.04878 -24.36262 -23.59172 -22.96209 -22.39278 -21.32889 -19.68249 -18.87230 -18.10353 -17.88795 -17.77867 -17.41016 -16.87928 -16.63812 -16.38670 -16.04390 -15.59725 -15.16016 -14.89582 -14.58222 -14.42076 -14.41472 -14.16718 -13.88059 -13.83457 -13.41555 -13.30198 -13.15950 -13.03627 -12.90410 -12.83199 -12.53377 -12.48859 -12.05032 -11.76792 -11.73089 -11.57037 -11.08255 -10.92551 -10.57020 -10.03294 -9.54398 -8.77515 -8.69174 -8.14842 -6.47499 0.16256 0.65832 0.80666 1.02703 1.40269 1.45083 1.48709 1.60591 1.68428 1.92374 2.25232 2.76082 2.91814 3.34214 3.61148 3.95340 3.96137 4.02916 4.06756 4.22328 4.23622 4.31765 4.34466 4.35792 4.49472 4.60495 4.81347 4.92589 4.93466 4.99292 5.11390 5.15458 5.36442 5.37849 5.41754 5.78919 5.87776 5.88321 6.02056 6.23226 6.57868 6.60398 6.97133 7.34565 7.74546 8.64096 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.003137 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.031424 B = 8922.744817 C =10505.963078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.485 3.515 5 O -0.524 6.524 6 C -0.107 4.107 7 S -0.187 6.187 8 C -0.088 4.088 9 C 0.493 3.507 10 O -0.573 6.573 11 N -0.391 5.391 12 C -0.384 4.384 13 H 0.106 0.894 14 C 0.024 3.976 15 N -0.875 5.875 16 Si 0.981 3.019 17 H -0.251 1.251 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.152 3.848 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.163 4.163 24 C -0.120 4.120 25 C -0.218 4.218 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.275 0.725 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -3.621 3.356 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.269 6.269 4 C 0.328 3.672 5 O -0.413 6.413 6 C -0.255 4.255 7 S 0.038 5.962 8 C -0.238 4.238 9 C 0.284 3.716 10 O -0.458 6.458 11 N -0.099 5.099 12 C -0.511 4.511 13 H 0.123 0.877 14 C -0.183 4.183 15 N -0.508 5.508 16 Si 0.803 3.197 17 H -0.174 1.174 18 H -0.203 1.203 19 H -0.202 1.202 20 C 0.055 3.945 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.182 4.182 24 C -0.139 4.139 25 C -0.237 4.237 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.193 -5.278 3.187 12.779 hybrid contribution -0.759 1.789 -0.393 1.982 sum -11.952 -3.489 2.794 12.761 Atomic orbital electron populations 1.21829 0.89963 1.04494 1.03899 1.23373 0.97277 0.78798 1.02716 1.86480 1.22590 1.34114 1.83711 1.22785 0.81199 0.91255 0.71976 1.90721 1.61040 1.43702 1.45854 1.23167 0.95931 0.95082 1.11307 1.88187 1.01350 1.08305 1.98368 1.23187 0.95475 0.96615 1.08562 1.20637 0.90098 0.82816 0.78048 1.90228 1.64936 1.37069 1.53600 1.41110 1.03070 1.05868 1.59847 1.19744 1.25616 0.98629 1.07076 0.87668 1.26383 0.95778 1.03348 0.92810 1.70160 1.38267 1.35848 1.06520 0.85061 0.78315 0.76992 0.79296 1.17402 1.20282 1.20156 1.18620 0.84111 0.94447 0.97284 1.21065 0.94756 0.97069 1.01597 1.21166 0.92927 0.99239 1.00942 1.21227 1.00333 0.92272 1.04394 1.21233 0.93846 0.98467 1.00349 1.22812 0.95162 1.00413 1.05348 0.91008 0.91146 0.88091 0.91373 0.91198 0.82896 0.83487 0.85318 0.86539 0.91494 0.86268 0.84797 0.83999 0.84871 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.05 0.89 6.19 71.98 0.45 1.34 16 3 O -0.35 -7.59 10.22 -51.41 -0.53 -8.12 16 4 C 0.49 12.85 7.98 71.24 0.57 13.42 16 5 O -0.52 -17.98 15.61 21.96 0.34 -17.63 16 6 C -0.11 -2.48 6.54 71.24 0.47 -2.02 16 7 S -0.19 -6.66 20.02 -56.49 -1.13 -7.79 16 8 C -0.09 -3.24 5.25 71.24 0.37 -2.87 16 9 C 0.49 23.50 7.59 87.66 0.66 24.17 16 10 O -0.57 -29.81 12.27 -3.02 -0.04 -29.84 16 11 N -0.39 -19.53 2.62 -458.90 -1.20 -20.73 16 12 C -0.38 -17.99 7.61 84.02 0.64 -17.35 16 13 H 0.11 4.54 7.85 -2.91 -0.02 4.51 16 14 C 0.02 1.09 3.49 84.91 0.30 1.39 16 15 N -0.88 -44.38 11.39 21.65 0.25 -44.13 16 16 Si 0.98 35.67 29.57 68.60 2.03 37.70 16 17 H -0.25 -8.50 7.11 99.48 0.71 -7.80 16 18 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.28 -9.95 7.11 99.48 0.71 -9.25 16 20 C 0.15 7.74 6.05 38.22 0.23 7.97 16 21 C -0.12 -5.91 7.87 22.41 0.18 -5.73 16 22 C -0.12 -5.00 10.04 22.25 0.22 -4.77 16 23 C -0.16 -6.09 10.04 22.30 0.22 -5.87 16 24 C -0.12 -4.93 10.04 22.25 0.22 -4.71 16 25 C -0.22 -10.65 9.06 22.41 0.20 -10.44 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.07 1.22 8.13 -2.39 -0.02 1.21 16 31 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.13 4.02 8.14 -2.39 -0.02 4.00 16 34 H 0.12 4.18 8.04 -2.39 -0.02 4.16 16 35 H 0.28 13.19 8.32 -92.71 -0.77 12.41 16 36 H 0.12 5.86 5.15 -2.91 -0.02 5.84 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 38 H 0.14 4.11 8.06 -2.92 -0.02 4.09 16 39 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.16 8.24 4.50 -64.43 -0.29 7.95 16 Total: -1.00 -67.52 354.20 5.97 -61.55 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.78 Total: 35.24 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.48 Total: -6.23 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.96 Total: -64.87 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -0.22 Total: -55.59 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -1.13 Total: -7.79 kcal Total: -67.52 5.97 -61.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078971572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.187 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds