Wall clock time and date at job start Tue Mar 31 2020 14:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34218 * 117.00319 * 2 1 4 4 O 1.20836 * 119.99865 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00455 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47525 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47164 * 179.97438 * 6 5 3 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 6 5 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31631 * 119.99738 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99772 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00042 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00031 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08998 * 109.46852 * 299.99970 * 1 2 3 27 27 H 1.09000 * 109.46968 * 59.99616 * 1 2 3 28 28 H 1.09005 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47289 * 60.00052 * 5 3 2 30 30 H 1.09004 * 109.47323 * 300.00244 * 5 3 2 31 31 H 1.09000 * 109.46773 * 60.00595 * 6 5 3 32 32 H 1.08994 * 109.47379 * 300.00225 * 6 5 3 33 33 H 1.09005 * 109.46655 * 60.00207 * 7 6 5 34 34 H 1.09002 * 109.47164 * 300.00138 * 7 6 5 35 35 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 36 36 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 38 38 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 39 39 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5281 2.8220 0.0023 8 7 5.9435 4.2268 0.0035 9 6 7.2540 4.5421 0.0041 10 8 8.0911 3.6608 0.0043 11 6 7.6733 5.9601 0.0047 12 6 6.7131 6.9744 0.0040 13 6 7.1060 8.2978 0.0040 14 6 8.4484 8.6251 0.0114 15 6 9.4137 7.6225 0.0064 16 16 11.1241 8.0455 0.0078 17 6 11.4550 7.9876 -1.7218 18 1 10.6491 7.8183 -2.4206 19 6 12.7510 8.1597 -2.1863 20 7 12.9981 8.1170 -3.4785 21 14 14.1451 8.4520 -0.9779 22 1 14.7289 7.1486 -0.5710 23 1 15.1927 9.2840 -1.6225 24 1 13.6220 9.1558 0.2206 25 6 9.0278 6.2884 0.0059 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.9564 0.7805 -0.8891 30 1 3.9558 0.7808 0.8908 31 1 3.6102 3.2358 0.8911 32 1 3.6108 3.2363 -0.8888 33 1 5.9185 2.3279 -0.8875 34 1 5.9171 2.3277 0.8926 35 1 5.2756 4.9301 0.0030 36 1 5.6627 6.7233 0.0034 37 1 6.3614 9.0800 0.0030 38 1 8.7496 9.6623 0.0162 39 1 13.9042 8.2369 -3.8032 40 1 9.7746 5.5082 0.0061 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079505810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:00 Heat of formation + Delta-G solvation = -109.425166 kcal Electronic energy + Delta-G solvation = -22933.386329 eV Core-core repulsion = 19225.040730 eV Total energy + Delta-G solvation = -3708.345600 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93063 -40.00064 -37.99366 -37.15018 -35.83071 -33.26930 -32.49601 -31.00163 -30.61582 -28.82487 -26.93863 -25.67808 -23.82050 -22.73102 -22.06953 -21.19730 -20.32424 -18.45232 -18.02684 -17.30495 -17.21773 -17.07040 -16.09148 -15.92626 -15.64529 -15.20848 -14.89613 -14.70680 -14.39905 -14.03510 -13.71318 -13.55666 -13.42493 -12.92983 -12.88568 -12.77755 -12.46475 -12.33454 -12.03798 -11.85494 -11.43560 -11.35382 -11.26957 -11.20193 -11.09714 -10.97392 -10.62922 -9.95858 -9.83928 -9.26109 -9.18339 -9.07964 -8.65111 -8.16087 -7.13395 -6.32684 -4.08265 1.09568 1.58766 1.73308 2.18734 2.85443 3.02182 3.11356 3.27530 3.38848 3.50430 4.06484 4.14444 4.26474 4.43322 4.43673 4.62082 4.66632 4.70618 4.87736 4.89986 4.99917 5.02463 5.04749 5.06513 5.07825 5.18236 5.31412 5.63207 5.63781 5.73324 5.78514 5.90095 5.92335 6.17833 6.28704 6.50744 6.56741 6.82444 7.10262 7.25706 7.42895 7.91431 8.23597 8.44894 9.11101 10.76704 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.001966 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.508194 B =14240.523631 C =14701.077153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.461 3.539 4 O -0.507 6.507 5 C -0.111 4.111 6 C -0.123 4.123 7 C 0.120 3.880 8 N -0.733 5.733 9 C 0.565 3.435 10 O -0.533 6.533 11 C -0.153 4.153 12 C -0.086 4.086 13 C -0.139 4.139 14 C -0.051 4.051 15 C -0.086 4.086 16 S -0.112 6.112 17 C -0.510 4.510 18 H 0.091 0.909 19 C 0.095 3.905 20 N -0.875 5.875 21 Si 0.858 3.142 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.016 4.016 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.272 0.728 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.517 -11.878 8.442 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.394 6.394 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.003 4.003 8 N -0.386 5.386 9 C 0.353 3.647 10 O -0.410 6.410 11 C -0.158 4.158 12 C -0.105 4.105 13 C -0.159 4.159 14 C -0.072 4.072 15 C -0.196 4.196 16 S 0.122 5.878 17 C -0.657 4.657 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.512 5.512 21 Si 0.683 3.317 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.164 1.164 25 C -0.038 4.038 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.236 0.764 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.236 -11.970 9.151 26.860 hybrid contribution -0.778 0.163 -0.837 1.154 sum -23.014 -11.807 8.315 27.170 Atomic orbital electron populations 1.23289 0.76099 1.03825 1.02660 1.86508 1.23661 1.33511 1.84078 1.23802 0.92267 0.81326 0.72196 1.90696 1.67329 1.36327 1.45089 1.21280 0.87428 0.99450 1.06715 1.21626 0.94882 0.94790 1.04752 1.21270 0.93160 0.82894 1.03013 1.45830 1.07470 1.08287 1.77031 1.18365 0.81900 0.88874 0.75563 1.90780 1.51400 1.49659 1.49167 1.19821 0.94732 0.91962 1.09304 1.21186 0.98001 0.92897 0.98387 1.21053 0.96104 0.95892 1.02874 1.21902 0.92044 0.99797 0.93470 1.22200 1.00588 0.94311 1.02545 1.83064 1.00711 1.89724 1.14298 1.22252 0.98265 1.57391 0.87758 0.89070 1.24748 0.97989 0.93471 0.95197 1.69929 1.21618 1.47132 1.12474 0.86728 0.82658 0.79929 0.82407 1.19021 1.19794 1.16352 1.21898 0.94362 0.96416 0.91124 0.91813 0.91800 0.87987 0.86969 0.87012 0.90113 0.90061 0.90984 0.91039 0.76398 0.86275 0.85594 0.84896 0.91812 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.61 10.56 -39.23 -0.41 -3.02 16 3 C 0.46 3.60 7.96 36.00 0.29 3.89 16 4 O -0.51 -5.42 15.73 -18.76 -0.30 -5.71 16 5 C -0.11 -0.58 5.81 -27.89 -0.16 -0.74 16 6 C -0.12 -0.79 4.62 -26.73 -0.12 -0.91 16 7 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 8 N -0.73 -7.94 5.51 -61.24 -0.34 -8.28 16 9 C 0.56 8.83 7.77 -12.32 -0.10 8.73 16 10 O -0.53 -10.29 16.34 5.32 0.09 -10.20 16 11 C -0.15 -2.52 5.87 -105.00 -0.62 -3.13 16 12 C -0.09 -1.14 9.54 -39.12 -0.37 -1.51 16 13 C -0.14 -1.94 10.02 -39.67 -0.40 -2.33 16 14 C -0.05 -0.89 9.79 -39.25 -0.38 -1.27 16 15 C -0.09 -1.78 5.45 -39.00 -0.21 -2.00 16 16 S -0.11 -2.71 19.38 -107.50 -2.08 -4.80 16 17 C -0.51 -14.66 10.01 30.92 0.31 -14.35 16 18 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 19 C 0.09 2.74 5.50 -17.45 -0.10 2.64 16 20 N -0.88 -26.30 13.97 55.49 0.78 -25.53 16 21 Si 0.86 21.04 27.74 -169.99 -4.71 16.33 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.24 -5.68 6.74 56.52 0.38 -5.30 16 25 C -0.02 -0.33 9.34 -38.92 -0.36 -0.69 16 26 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 27 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 3.32 6.50 -40.82 -0.27 3.06 16 36 H 0.12 1.09 6.40 -52.49 -0.34 0.76 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.14 3.01 7.65 -52.49 -0.40 2.60 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -35.65 364.26 -7.90 -43.55 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.22 Total: 1.59 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.19 Total: -9.41 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.44 Total: -33.80 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.62 Total: -18.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.08 Total: -4.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.65 -7.90 -43.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079505810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.874 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds