Wall clock time and date at job start Tue Mar 31 2020 14:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34218 * 117.00319 * 2 1 4 4 O 1.20836 * 119.99865 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00455 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47525 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47164 * 179.97438 * 6 5 3 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 6 5 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31631 * 119.99738 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99772 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00042 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00031 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08998 * 109.46852 * 299.99970 * 1 2 3 27 27 H 1.09000 * 109.46968 * 59.99616 * 1 2 3 28 28 H 1.09005 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47289 * 60.00052 * 5 3 2 30 30 H 1.09004 * 109.47323 * 300.00244 * 5 3 2 31 31 H 1.09000 * 109.46773 * 60.00595 * 6 5 3 32 32 H 1.08994 * 109.47379 * 300.00225 * 6 5 3 33 33 H 1.09005 * 109.46655 * 60.00207 * 7 6 5 34 34 H 1.09002 * 109.47164 * 300.00138 * 7 6 5 35 35 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 36 36 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 38 38 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 39 39 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5281 2.8220 0.0023 8 7 5.9435 4.2268 0.0035 9 6 7.2540 4.5421 0.0041 10 8 8.0911 3.6608 0.0043 11 6 7.6733 5.9601 0.0047 12 6 6.7131 6.9744 0.0040 13 6 7.1060 8.2978 0.0040 14 6 8.4484 8.6251 0.0114 15 6 9.4137 7.6225 0.0064 16 16 11.1241 8.0455 0.0078 17 6 11.4550 7.9876 -1.7218 18 1 10.6491 7.8183 -2.4206 19 6 12.7510 8.1597 -2.1863 20 7 12.9981 8.1170 -3.4785 21 14 14.1451 8.4520 -0.9779 22 1 14.7289 7.1486 -0.5710 23 1 15.1927 9.2840 -1.6225 24 1 13.6220 9.1558 0.2206 25 6 9.0278 6.2884 0.0059 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.9564 0.7805 -0.8891 30 1 3.9558 0.7808 0.8908 31 1 3.6102 3.2358 0.8911 32 1 3.6108 3.2363 -0.8888 33 1 5.9185 2.3279 -0.8875 34 1 5.9171 2.3277 0.8926 35 1 5.2756 4.9301 0.0030 36 1 5.6627 6.7233 0.0034 37 1 6.3614 9.0800 0.0030 38 1 8.7496 9.6623 0.0162 39 1 13.9042 8.2369 -3.8032 40 1 9.7746 5.5082 0.0061 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079505810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:00 Heat of formation + Delta-G solvation = -133.560658 kcal Electronic energy + Delta-G solvation = -22934.432923 eV Core-core repulsion = 19225.040730 eV Total energy + Delta-G solvation = -3709.392193 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52303 -41.19791 -39.24488 -37.75972 -36.71231 -34.71770 -34.11817 -32.20930 -31.92865 -29.40816 -27.92256 -27.56498 -24.91412 -23.84419 -23.06091 -21.94804 -21.34701 -20.03441 -19.05462 -18.56231 -17.75491 -17.74503 -17.22471 -17.14254 -16.80005 -16.68931 -16.45940 -15.68761 -15.58902 -15.05999 -14.91437 -14.70485 -14.39894 -14.37357 -13.93013 -13.60691 -13.43059 -13.32505 -13.12088 -13.07167 -12.91603 -12.69266 -12.50066 -12.27287 -11.97035 -11.85283 -11.77795 -11.58962 -11.23878 -11.20037 -10.92953 -10.28138 -9.91718 -9.74747 -9.14462 -8.53888 -6.28176 -0.21289 0.20637 1.06501 1.16783 1.31564 1.44100 1.63780 1.68969 1.78264 2.17057 2.21804 2.59817 2.84143 2.96731 3.58587 3.69199 3.89193 3.92255 3.97031 4.04069 4.20032 4.30952 4.32318 4.32629 4.45362 4.50083 4.59060 4.62817 4.72949 4.74125 4.89843 5.06380 5.13912 5.19486 5.29579 5.33910 5.42908 5.43703 5.68671 5.82601 6.10000 6.44515 6.70609 6.88399 7.12237 8.59658 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.001966 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.508194 B =14240.523631 C =14701.077153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.462 3.538 4 O -0.541 6.541 5 C -0.108 4.108 6 C -0.110 4.110 7 C 0.118 3.882 8 N -0.710 5.710 9 C 0.562 3.438 10 O -0.580 6.580 11 C -0.159 4.159 12 C -0.060 4.060 13 C -0.123 4.123 14 C -0.059 4.059 15 C -0.121 4.121 16 S -0.114 6.114 17 C -0.526 4.526 18 H 0.046 0.954 19 C 0.040 3.960 20 N -0.919 5.919 21 Si 0.923 3.077 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.227 1.227 25 C -0.043 4.043 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.416 0.584 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.140 0.860 39 H 0.278 0.722 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.263 -11.761 9.926 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.431 6.431 5 C -0.146 4.146 6 C -0.148 4.148 7 C -0.005 4.005 8 N -0.363 5.363 9 C 0.350 3.650 10 O -0.461 6.461 11 C -0.164 4.164 12 C -0.078 4.078 13 C -0.142 4.142 14 C -0.080 4.080 15 C -0.232 4.232 16 S 0.119 5.881 17 C -0.673 4.673 18 H 0.064 0.936 19 C -0.165 4.165 20 N -0.556 5.556 21 Si 0.743 3.257 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.150 1.150 25 C -0.065 4.065 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.255 0.745 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.158 0.842 39 H 0.087 0.913 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.046 -11.857 10.640 29.683 hybrid contribution -0.228 0.033 -1.322 1.342 sum -25.274 -11.824 9.318 29.417 Atomic orbital electron populations 1.23516 0.75016 1.05564 1.02439 1.86506 1.24853 1.33244 1.83724 1.24235 0.93075 0.80960 0.71077 1.90680 1.68232 1.37310 1.46883 1.21339 0.85796 0.98934 1.08485 1.21487 0.92707 0.95775 1.04811 1.21417 0.94725 0.81360 1.02961 1.45685 1.05941 1.09971 1.74654 1.18328 0.83064 0.88081 0.75513 1.90761 1.53032 1.50647 1.51668 1.19972 0.93798 0.93612 1.09010 1.21768 0.99867 0.91738 0.94449 1.21568 0.95171 0.97454 0.99988 1.22086 0.93245 0.99297 0.93336 1.22087 0.98678 0.95689 1.06724 1.82601 1.05045 1.90112 1.10297 1.22392 0.97416 1.57134 0.90328 0.93597 1.25742 1.00648 0.92979 0.97106 1.70034 1.22678 1.48358 1.14553 0.85758 0.79279 0.80240 0.80385 1.18677 1.18112 1.15014 1.21656 0.95843 0.95378 0.93580 0.91988 0.92109 0.85355 0.85330 0.85057 0.89851 0.90215 0.91401 0.90863 0.74542 0.80832 0.80605 0.84230 0.91262 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.37 -4.66 10.56 -51.30 -0.54 -5.20 16 3 C 0.46 6.36 7.96 71.23 0.57 6.92 16 4 O -0.54 -10.78 15.73 21.93 0.35 -10.43 16 5 C -0.11 -0.84 5.81 29.85 0.17 -0.67 16 6 C -0.11 -1.10 4.62 30.60 0.14 -0.96 16 7 C 0.12 1.78 5.67 86.38 0.49 2.27 16 8 N -0.71 -13.49 5.51 -465.94 -2.57 -16.05 16 9 C 0.56 17.08 7.77 86.79 0.67 17.76 16 10 O -0.58 -22.95 16.34 -3.88 -0.06 -23.02 16 11 C -0.16 -5.05 5.87 -20.11 -0.12 -5.17 16 12 C -0.06 -1.33 9.54 22.57 0.22 -1.12 16 13 C -0.12 -2.88 10.02 22.21 0.22 -2.66 16 14 C -0.06 -1.97 9.79 22.48 0.22 -1.75 16 15 C -0.12 -5.16 5.45 22.65 0.12 -5.03 16 16 S -0.11 -5.74 19.38 -56.49 -1.09 -6.83 16 17 C -0.53 -31.83 10.01 67.94 0.68 -31.15 16 18 H 0.05 3.08 8.02 -2.91 -0.02 3.05 16 19 C 0.04 2.41 5.50 84.84 0.47 2.87 16 20 N -0.92 -57.30 13.97 21.64 0.30 -56.99 16 21 Si 0.92 44.29 27.74 68.60 1.90 46.19 16 22 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.23 -10.34 6.74 99.48 0.67 -9.66 16 25 C -0.04 -1.77 9.34 22.70 0.21 -1.56 16 26 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 27 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 28 H 0.13 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.08 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.42 5.09 6.50 -92.71 -0.60 4.49 16 36 H 0.17 1.99 6.40 -2.91 -0.02 1.97 16 37 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.28 15.91 8.31 -92.71 -0.77 15.13 16 40 H 0.11 5.04 7.65 -2.91 -0.02 5.02 16 Total: -1.00 -84.33 364.26 3.97 -80.35 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.42 Total: 10.79 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 5.26 Total: -18.81 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -2.26 Total: -73.05 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.26 Total: -38.65 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.19 kcal Atomic # 16 Polarization: -5.74 SS G_CDS: -1.09 Total: -6.83 kcal Total: -84.33 3.97 -80.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079505810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.209 kcal (2) G-P(sol) polarization free energy of solvation -84.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds