Wall clock time and date at job start Tue Mar 31 2020 14:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 119.99625 * 2 1 4 4 C 1.50701 * 109.47210 * 85.00374 * 3 2 1 5 5 C 1.34004 * 124.92416 * 90.62126 * 4 3 2 6 6 C 1.46781 * 106.18139 * 180.02562 * 5 4 3 7 7 C 1.39402 * 134.36877 * 179.30970 * 6 5 4 8 8 C 1.36746 * 119.71636 * 180.02562 * 7 6 5 9 9 C 1.38743 * 120.41604 * 0.02562 * 8 7 6 10 10 C 1.37851 * 120.68571 * 359.97438 * 9 8 7 11 11 C 1.38942 * 119.81866 * 0.27703 * 10 9 8 12 12 O 1.34449 * 124.91933 * 269.97112 * 4 3 2 13 13 S 1.65597 * 119.99740 * 179.97438 * 2 1 3 14 14 O 1.42099 * 104.28173 * 26.07514 * 13 2 1 15 15 O 1.42109 * 104.27528 * 153.92833 * 13 2 1 16 16 C 1.81400 * 104.44974 * 269.99849 * 13 2 1 17 17 C 1.52999 * 109.47045 * 180.02562 * 16 13 2 18 18 C 1.50692 * 109.47022 * 179.97438 * 17 16 13 19 19 H 1.08003 * 120.00587 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00060 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99943 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99917 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46896 * 60.00408 * 22 20 18 24 24 H 1.48501 * 109.46891 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47081 * 299.99851 * 22 20 18 26 26 H 1.09006 * 109.47109 * 90.00167 * 1 2 3 27 27 H 1.09001 * 109.46768 * 209.99977 * 1 2 3 28 28 H 1.08994 * 109.47159 * 330.00085 * 1 2 3 29 29 H 1.08997 * 109.47698 * 324.99547 * 3 2 1 30 30 H 1.09005 * 109.46922 * 204.99885 * 3 2 1 31 31 H 1.08001 * 126.90436 * 359.36915 * 5 4 3 32 32 H 1.08002 * 120.14480 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.79211 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.65364 * 179.97438 * 9 8 7 35 35 H 1.08002 * 120.08749 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46892 * 300.00183 * 16 13 2 37 37 H 1.08997 * 109.47335 * 60.00580 * 16 13 2 38 38 H 1.08993 * 109.47496 * 300.00154 * 17 16 13 39 39 H 1.09004 * 109.47242 * 60.00103 * 17 16 13 40 40 H 0.96998 * 119.99926 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7656 1.4154 5 6 3.3685 1.4810 2.2277 6 6 3.0916 2.1696 3.4940 7 6 3.7516 2.2612 4.7184 8 6 3.2088 3.0084 5.7269 9 6 2.0063 3.6744 5.5387 10 6 1.3394 3.5955 4.3348 11 6 1.8710 2.8374 3.2988 12 8 1.4641 2.5689 2.0421 13 16 2.2930 -1.4342 0.0006 14 8 1.3970 -2.3564 -0.6042 15 8 3.5395 -1.1194 -0.6048 16 6 2.5193 -1.8254 1.7574 17 6 3.2819 -3.1449 1.8919 18 6 3.4705 -3.4696 3.3513 19 1 3.0854 -2.8014 4.1074 20 6 4.1356 -4.6192 3.7215 21 7 4.6050 -5.4327 2.8009 22 14 4.3687 -5.0220 5.5307 23 1 3.0414 -5.1492 6.1844 24 1 5.1090 -6.3028 5.6612 25 1 5.1405 -3.9348 6.1844 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6501 2.0043 -0.5895 30 1 3.1857 1.1177 -0.4343 31 1 4.2225 0.8602 2.0002 32 1 4.6877 1.7442 4.8700 33 1 3.7193 3.0805 6.6759 34 1 1.5885 4.2608 6.3437 35 1 0.4037 4.1176 4.1990 36 1 3.0866 -1.0277 2.2371 37 1 1.5452 -1.9178 2.2376 38 1 2.7150 -3.9427 1.4122 39 1 4.2561 -3.0522 1.4119 40 1 5.0733 -6.2413 3.0613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080792104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:17 Heat of formation + Delta-G solvation = -43.133104 kcal Electronic energy + Delta-G solvation = -25320.784846 eV Core-core repulsion = 21615.313886 eV Total energy + Delta-G solvation = -3705.470960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.51757 -38.04911 -36.77941 -36.45502 -35.49966 -33.92448 -32.90820 -31.17484 -30.51200 -30.37874 -27.31210 -25.70071 -24.96872 -22.94509 -22.05028 -21.45072 -21.06775 -18.70443 -17.67922 -17.43080 -16.99444 -16.56113 -16.38444 -16.00933 -15.69290 -15.26376 -14.60538 -14.55422 -14.30510 -14.05349 -13.57732 -13.45606 -13.13628 -13.00006 -12.66818 -12.51085 -12.35875 -12.29368 -11.90197 -11.78017 -11.67644 -11.44533 -11.40966 -11.08286 -11.02752 -10.98111 -10.47386 -10.42701 -10.16458 -9.81763 -9.45678 -8.96007 -8.71485 -8.50969 -8.25467 -6.13236 -4.18588 0.60345 0.83241 1.27768 2.17388 2.57254 3.00716 3.26253 3.31155 3.33102 3.63903 4.14569 4.29235 4.37069 4.49977 4.57913 4.62427 4.83575 4.98124 5.07787 5.12038 5.18587 5.21898 5.33965 5.39153 5.51211 5.59272 5.62388 5.65973 5.76960 5.78176 5.90310 6.10807 6.15442 6.34209 6.37202 6.43404 6.47531 6.57601 7.10089 7.27849 7.33638 7.79993 8.16757 8.84558 9.46094 10.97789 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.005388 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.818538 B = 5195.543071 C = 7654.731074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.005 6.005 3 C 0.191 3.809 4 C 0.007 3.993 5 C -0.190 4.190 6 C -0.127 4.127 7 C -0.064 4.064 8 C -0.139 4.139 9 C -0.095 4.095 10 C -0.111 4.111 11 C 0.053 3.947 12 O -0.189 6.189 13 S 2.584 3.416 14 O -0.958 6.958 15 O -0.962 6.962 16 C -0.589 4.589 17 C 0.030 3.970 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.165 0.835 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 19.391 0.507 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.839 5.839 3 C 0.065 3.935 4 C -0.042 4.042 5 C -0.210 4.210 6 C -0.128 4.128 7 C -0.082 4.082 8 C -0.157 4.157 9 C -0.113 4.113 10 C -0.129 4.129 11 C 0.005 3.995 12 O -0.090 6.090 13 S 2.683 3.317 14 O -0.949 6.949 15 O -0.952 6.952 16 C -0.722 4.722 17 C -0.009 4.009 18 C -0.558 4.558 19 H 0.079 0.921 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.201 1.201 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.149 0.851 31 H 0.183 0.817 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.275 18.875 -0.502 19.897 hybrid contribution 0.113 -0.177 1.856 1.868 sum -6.162 18.698 1.354 19.733 Atomic orbital electron populations 1.21483 0.78238 1.03199 1.02283 1.57870 1.15441 1.20675 1.89915 1.19891 1.00347 0.86031 0.87203 1.23033 0.89452 0.95010 0.96702 1.22552 1.01543 1.04744 0.92189 1.19942 0.96235 1.01032 0.95543 1.20410 0.99657 0.97311 0.90827 1.20786 0.96660 0.98923 0.99352 1.20915 0.95118 0.99301 0.95944 1.19898 1.01420 1.00963 0.90652 1.19660 0.94903 1.00157 0.84743 1.83937 1.45529 1.56656 1.22889 1.06012 0.73676 0.72547 0.79497 1.93550 1.64685 1.61438 1.75185 1.93524 1.43636 1.82735 1.75312 1.30540 1.10429 1.10919 1.20362 1.18955 0.94870 0.87013 1.00045 1.20945 1.37097 1.07056 0.90729 0.92136 1.25047 0.95298 0.96058 0.97927 1.69940 1.37226 1.12719 1.32985 0.86555 0.78413 0.77763 0.84712 1.20090 1.21026 1.20066 0.92123 0.90782 0.91079 0.88064 0.85096 0.81716 0.85141 0.85369 0.84950 0.85254 0.86067 0.86294 0.94884 0.94831 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.22 59.85 0.61 1.67 16 2 N -1.00 -13.68 3.10 -123.05 -0.38 -14.06 16 3 C 0.19 2.21 6.14 -5.20 -0.03 2.18 16 4 C 0.01 0.10 6.81 -35.80 -0.24 -0.15 16 5 C -0.19 -2.66 9.54 -37.62 -0.36 -3.02 16 6 C -0.13 -1.78 6.40 -105.16 -0.67 -2.45 16 7 C -0.06 -0.80 10.05 -39.69 -0.40 -1.19 16 8 C -0.14 -1.44 9.98 -39.93 -0.40 -1.84 16 9 C -0.09 -0.91 10.01 -39.54 -0.40 -1.30 16 10 C -0.11 -1.20 10.07 -39.46 -0.40 -1.60 16 11 C 0.05 0.71 7.42 -38.47 -0.29 0.42 16 12 O -0.19 -2.52 10.58 3.93 0.04 -2.48 16 13 S 2.58 46.76 5.38 -107.50 -0.58 46.18 16 14 O -0.96 -19.89 17.09 -57.54 -0.98 -20.87 16 15 O -0.96 -19.06 16.53 -57.54 -0.95 -20.01 16 16 C -0.59 -11.58 6.12 37.16 0.23 -11.35 16 17 C 0.03 0.77 4.98 -27.89 -0.14 0.63 16 18 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.86 7.79 -51.93 -0.40 0.45 16 28 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 29 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.13 1.48 6.82 -51.93 -0.35 1.12 16 31 H 0.17 2.21 7.77 -52.49 -0.41 1.80 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 2.21 6.26 -51.92 -0.32 1.89 16 37 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -34.79 354.78 -9.94 -44.73 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.25 Total: 1.68 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -2.89 Total: -31.08 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.36 Total: -39.70 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.89 Total: -43.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 46.76 SS G_CDS: -0.58 Total: 46.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.79 -9.94 -44.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080792104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.600 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds