Wall clock time and date at job start Tue Mar 31 2020 13:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46931 * 2 1 4 4 C 1.52999 * 109.46636 * 119.99848 * 2 1 3 5 5 S 1.81401 * 109.47452 * 294.99840 * 4 2 1 6 6 C 1.81399 * 102.99908 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46857 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99763 * 5.02908 * 7 6 5 9 9 N 1.34773 * 119.99871 * 185.02614 * 7 6 5 10 10 C 1.37140 * 120.00147 * 3.75716 * 9 7 6 11 11 H 1.07999 * 120.00264 * 308.21102 * 10 9 7 12 12 C 1.38891 * 119.99694 * 128.20496 * 10 9 7 13 13 N 1.31431 * 119.99639 * 173.09235 * 12 10 9 14 14 Si 1.86798 * 120.00256 * 353.09675 * 12 10 9 15 15 H 1.48492 * 109.47342 * 95.34381 * 14 12 10 16 16 H 1.48496 * 109.46998 * 215.34562 * 14 12 10 17 17 H 1.48502 * 109.46987 * 335.34225 * 14 12 10 18 18 C 1.39791 * 120.00213 * 183.76477 * 9 7 6 19 19 C 1.38957 * 120.08278 * 171.69654 * 18 9 7 20 20 C 1.38081 * 119.92415 * 179.97438 * 19 18 9 21 21 C 1.38312 * 120.07640 * 359.97438 * 20 19 18 22 22 C 1.38312 * 120.15613 * 0.04306 * 21 20 19 23 23 C 1.38081 * 120.07655 * 359.95532 * 22 21 20 24 24 C 1.50695 * 109.47062 * 239.99880 * 2 1 3 25 25 O 1.20825 * 119.99819 * 240.00272 * 24 2 1 26 26 O 1.34231 * 119.99940 * 59.99999 * 24 2 1 27 27 H 1.09001 * 109.47471 * 59.99848 * 1 2 3 28 28 H 1.09001 * 109.47835 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47591 * 300.00014 * 1 2 3 30 30 H 1.09005 * 109.46935 * 174.99868 * 4 2 1 31 31 H 1.09000 * 109.47026 * 55.00140 * 4 2 1 32 32 H 1.08997 * 109.47290 * 60.00352 * 6 5 4 33 33 H 1.08996 * 109.47414 * 300.00234 * 6 5 4 34 34 H 0.97002 * 119.99440 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.03364 * 359.70245 * 19 18 9 36 36 H 1.08000 * 119.96278 * 179.97438 * 20 19 18 37 37 H 1.07997 * 119.92169 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.95867 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.03830 * 180.02562 * 23 22 21 40 40 H 0.96706 * 116.99475 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7212 1.2493 5 16 1.5600 0.2156 2.7267 6 6 2.2428 -0.7798 4.0807 7 6 1.9232 -0.1220 5.3984 8 8 1.2197 0.8655 5.4283 9 7 2.4190 -0.6311 6.5435 10 6 3.2763 -1.7008 6.5038 11 1 3.0052 -2.5900 5.9540 12 6 4.4932 -1.6406 7.1705 13 7 5.2540 -2.7096 7.2473 14 14 5.0486 -0.0404 7.9581 15 1 4.6728 -0.0392 9.3947 16 1 6.5226 0.0880 7.8319 17 1 4.3918 1.1022 7.2737 18 6 2.0595 -0.0689 7.7718 19 6 2.4274 -0.6927 8.9577 20 6 2.0709 -0.1343 10.1692 21 6 1.3489 1.0450 10.2032 22 6 0.9807 1.6684 9.0248 23 6 1.3338 1.1156 7.8098 24 6 2.0323 -0.7104 -1.2304 25 8 2.7269 -1.6928 -1.1195 26 8 1.7080 -0.2518 -2.4496 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.1262 -0.7995 1.2057 31 1 1.6052 -1.7198 1.2952 32 1 3.3240 -0.8562 3.9660 33 1 1.8035 -1.7770 4.0560 34 1 6.1041 -2.6674 7.7126 35 1 2.9878 -1.6156 8.9318 36 1 2.3562 -0.6188 11.0913 37 1 1.0711 1.4793 11.1522 38 1 0.4165 2.5889 9.0551 39 1 1.0462 1.6032 6.8899 40 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086110168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:28 Heat of formation + Delta-G solvation = -79.432688 kcal Electronic energy + Delta-G solvation = -24479.980331 eV Core-core repulsion = 20772.935303 eV Total energy + Delta-G solvation = -3707.045028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57131 -40.12913 -37.60243 -36.47398 -35.25127 -34.90455 -32.31836 -30.52131 -30.12898 -28.21251 -27.33986 -25.32686 -24.85941 -22.18515 -21.49653 -20.70590 -19.50931 -18.35941 -18.21399 -17.14382 -16.57539 -16.07577 -15.93052 -15.76065 -15.35268 -14.93777 -14.49203 -14.20935 -14.07168 -13.74577 -13.48680 -13.28504 -12.96143 -12.80595 -12.69622 -12.43671 -12.30484 -12.01402 -11.93277 -11.77933 -11.55269 -11.49415 -11.39968 -11.05124 -10.77393 -10.63333 -10.35631 -10.18843 -9.73040 -9.54447 -9.03266 -8.55052 -8.08229 -7.40781 -7.15847 -6.66175 -4.58788 1.59080 1.97039 1.97641 2.12992 2.70694 2.96009 3.09068 3.19202 3.28366 3.40155 4.00314 4.07956 4.33600 4.51514 4.58847 4.79693 4.87253 5.15922 5.36266 5.37714 5.50652 5.58092 5.60268 5.63986 5.68823 5.78650 5.84913 5.94978 6.02366 6.23642 6.25166 6.34649 6.49915 6.75900 7.11284 7.18210 7.24640 7.30525 7.63795 7.65096 7.86536 8.08482 8.64245 8.95095 9.22688 10.36775 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.003304 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.490160 B = 8472.036571 C = 9529.951814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 H 0.119 0.881 4 C -0.099 4.099 5 S -0.189 6.189 6 C -0.095 4.095 7 C 0.513 3.487 8 O -0.541 6.541 9 N -0.401 5.401 10 C -0.374 4.374 11 H 0.110 0.890 12 C 0.086 3.914 13 N -0.853 5.853 14 Si 0.868 3.132 15 H -0.251 1.251 16 H -0.287 1.287 17 H -0.259 1.259 18 C 0.155 3.845 19 C -0.152 4.152 20 C -0.107 4.107 21 C -0.169 4.169 22 C -0.110 4.110 23 C -0.182 4.182 24 C 0.486 3.514 25 O -0.512 6.512 26 O -0.515 6.515 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.281 0.719 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.179 0.821 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 4.448 -10.179 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 H 0.137 0.863 4 C -0.247 4.247 5 S 0.037 5.963 6 C -0.245 4.245 7 C 0.303 3.697 8 O -0.424 6.424 9 N -0.111 5.111 10 C -0.500 4.500 11 H 0.127 0.873 12 C -0.125 4.125 13 N -0.486 5.486 14 Si 0.694 3.306 15 H -0.175 1.175 16 H -0.214 1.214 17 H -0.183 1.183 18 C 0.059 3.941 19 C -0.173 4.173 20 C -0.126 4.126 21 C -0.188 4.188 22 C -0.129 4.129 23 C -0.202 4.202 24 C 0.327 3.673 25 O -0.399 6.399 26 O -0.326 6.326 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.196 0.804 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -6.666 5.647 -9.734 13.080 hybrid contribution 1.684 -1.185 0.068 2.061 sum -4.982 4.462 -9.666 11.754 Atomic orbital electron populations 1.21865 0.91000 1.03404 1.04175 1.20657 0.99016 1.00911 0.87644 0.86336 1.23342 1.04982 1.01988 0.94395 1.86968 1.74980 1.36398 0.97911 1.23310 1.06166 1.01780 0.93280 1.19904 0.81343 0.83541 0.84893 1.90260 1.40537 1.25931 1.85683 1.41280 1.39770 1.28468 1.01561 1.19035 0.97187 0.94735 1.39085 0.87260 1.25443 0.94906 0.97188 0.94957 1.69664 1.12072 1.28092 1.38765 0.87000 0.77920 0.83821 0.81895 1.17532 1.21368 1.18266 1.18438 0.95692 0.93457 0.86553 1.21084 1.03417 1.01800 0.90951 1.20826 0.98687 0.96130 0.96940 1.20938 1.02703 0.97488 0.97663 1.21018 1.00049 0.99365 0.92454 1.22767 1.00388 0.95900 1.01120 1.23456 0.76722 0.82405 0.84723 1.90748 1.35761 1.26173 1.87255 1.84530 1.72298 1.59032 1.16790 0.91165 0.91896 0.89413 0.89017 0.89222 0.86474 0.87429 0.90888 0.84267 0.86826 0.87311 0.86877 0.80439 0.73187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.95 37.16 0.33 -1.00 16 2 C -0.06 -0.64 2.83 -91.78 -0.26 -0.90 16 3 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.10 -1.24 4.73 37.16 0.18 -1.06 16 5 S -0.19 -2.95 19.69 -107.50 -2.12 -5.07 16 6 C -0.09 -1.73 5.24 36.01 0.19 -1.54 16 7 C 0.51 11.26 7.59 -10.98 -0.08 11.18 16 8 O -0.54 -12.37 12.29 5.56 0.07 -12.30 16 9 N -0.40 -9.45 2.26 -58.98 -0.13 -9.58 16 10 C -0.37 -9.22 7.96 -14.94 -0.12 -9.34 16 11 H 0.11 2.78 7.90 -52.49 -0.41 2.36 16 12 C 0.09 2.16 4.30 -17.48 -0.08 2.09 16 13 N -0.85 -22.34 13.96 55.49 0.77 -21.57 16 14 Si 0.87 20.52 24.16 -169.99 -4.11 16.42 16 15 H -0.25 -5.74 6.05 56.52 0.34 -5.40 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.26 -6.47 6.90 56.52 0.39 -6.08 16 18 C 0.15 3.60 4.40 -83.69 -0.37 3.23 16 19 C -0.15 -3.38 5.77 -39.37 -0.23 -3.60 16 20 C -0.11 -2.06 9.77 -39.61 -0.39 -2.45 16 21 C -0.17 -3.01 10.04 -39.53 -0.40 -3.41 16 22 C -0.11 -2.07 10.04 -39.61 -0.40 -2.47 16 23 C -0.18 -3.97 9.03 -39.37 -0.36 -4.33 16 24 C 0.49 5.15 7.63 36.00 0.27 5.42 16 25 O -0.51 -7.10 16.68 -18.75 -0.31 -7.41 16 26 O -0.51 -3.96 13.33 -39.26 -0.52 -4.49 16 27 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.87 7.14 -51.92 -0.37 0.50 16 30 H 0.09 1.20 7.96 -51.92 -0.41 0.79 16 31 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.12 2.14 7.89 -51.93 -0.41 1.73 16 33 H 0.11 1.83 8.12 -51.93 -0.42 1.41 16 34 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.14 3.26 5.70 -52.49 -0.30 2.97 16 36 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.18 4.02 4.58 -56.01 -0.26 3.76 16 40 H 0.41 1.46 9.10 45.56 0.41 1.88 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -30.03 344.12 -7.20 -37.23 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.33 Total: 9.78 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.70 Total: -8.18 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.64 Total: -31.15 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.77 Total: -24.20 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.11 Total: 16.42 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.12 Total: -5.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.03 -7.20 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.206 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds