Wall clock time and date at job start Tue Mar 31 2020 13:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46931 * 2 1 4 4 C 1.52999 * 109.46636 * 119.99848 * 2 1 3 5 5 S 1.81401 * 109.47452 * 294.99840 * 4 2 1 6 6 C 1.81399 * 102.99908 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46857 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99763 * 5.02908 * 7 6 5 9 9 N 1.34773 * 119.99871 * 185.02614 * 7 6 5 10 10 C 1.37140 * 120.00147 * 3.75716 * 9 7 6 11 11 H 1.07999 * 120.00264 * 308.21102 * 10 9 7 12 12 C 1.38891 * 119.99694 * 128.20496 * 10 9 7 13 13 N 1.31431 * 119.99639 * 173.09235 * 12 10 9 14 14 Si 1.86798 * 120.00256 * 353.09675 * 12 10 9 15 15 H 1.48492 * 109.47342 * 95.34381 * 14 12 10 16 16 H 1.48496 * 109.46998 * 215.34562 * 14 12 10 17 17 H 1.48502 * 109.46987 * 335.34225 * 14 12 10 18 18 C 1.39791 * 120.00213 * 183.76477 * 9 7 6 19 19 C 1.38957 * 120.08278 * 171.69654 * 18 9 7 20 20 C 1.38081 * 119.92415 * 179.97438 * 19 18 9 21 21 C 1.38312 * 120.07640 * 359.97438 * 20 19 18 22 22 C 1.38312 * 120.15613 * 0.04306 * 21 20 19 23 23 C 1.38081 * 120.07655 * 359.95532 * 22 21 20 24 24 C 1.50695 * 109.47062 * 239.99880 * 2 1 3 25 25 O 1.20825 * 119.99819 * 240.00272 * 24 2 1 26 26 O 1.34231 * 119.99940 * 59.99999 * 24 2 1 27 27 H 1.09001 * 109.47471 * 59.99848 * 1 2 3 28 28 H 1.09001 * 109.47835 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47591 * 300.00014 * 1 2 3 30 30 H 1.09005 * 109.46935 * 174.99868 * 4 2 1 31 31 H 1.09000 * 109.47026 * 55.00140 * 4 2 1 32 32 H 1.08997 * 109.47290 * 60.00352 * 6 5 4 33 33 H 1.08996 * 109.47414 * 300.00234 * 6 5 4 34 34 H 0.97002 * 119.99440 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.03364 * 359.70245 * 19 18 9 36 36 H 1.08000 * 119.96278 * 179.97438 * 20 19 18 37 37 H 1.07997 * 119.92169 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.95867 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.03830 * 180.02562 * 23 22 21 40 40 H 0.96706 * 116.99475 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7212 1.2493 5 16 1.5600 0.2156 2.7267 6 6 2.2428 -0.7798 4.0807 7 6 1.9232 -0.1220 5.3984 8 8 1.2197 0.8655 5.4283 9 7 2.4190 -0.6311 6.5435 10 6 3.2763 -1.7008 6.5038 11 1 3.0052 -2.5900 5.9540 12 6 4.4932 -1.6406 7.1705 13 7 5.2540 -2.7096 7.2473 14 14 5.0486 -0.0404 7.9581 15 1 4.6728 -0.0392 9.3947 16 1 6.5226 0.0880 7.8319 17 1 4.3918 1.1022 7.2737 18 6 2.0595 -0.0689 7.7718 19 6 2.4274 -0.6927 8.9577 20 6 2.0709 -0.1343 10.1692 21 6 1.3489 1.0450 10.2032 22 6 0.9807 1.6684 9.0248 23 6 1.3338 1.1156 7.8098 24 6 2.0323 -0.7104 -1.2304 25 8 2.7269 -1.6928 -1.1195 26 8 1.7080 -0.2518 -2.4496 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.1262 -0.7995 1.2057 31 1 1.6052 -1.7198 1.2952 32 1 3.3240 -0.8562 3.9660 33 1 1.8035 -1.7770 4.0560 34 1 6.1041 -2.6674 7.7126 35 1 2.9878 -1.6156 8.9318 36 1 2.3562 -0.6188 11.0913 37 1 1.0711 1.4793 11.1522 38 1 0.4165 2.5889 9.0551 39 1 1.0462 1.6032 6.8899 40 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086110168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:28 Heat of formation + Delta-G solvation = -97.353744 kcal Electronic energy + Delta-G solvation = -24480.757446 eV Core-core repulsion = 20772.935303 eV Total energy + Delta-G solvation = -3707.822143 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82869 -41.40326 -39.21163 -37.23594 -36.99917 -35.79966 -34.22977 -32.07845 -31.70245 -29.71961 -28.33167 -27.18376 -25.68945 -23.77322 -23.07459 -21.66457 -21.17559 -19.94917 -19.16050 -18.24925 -17.98462 -17.73949 -17.19008 -16.94479 -16.80117 -16.52044 -15.92163 -15.49350 -15.35883 -15.11888 -14.89117 -14.79194 -14.48949 -14.30862 -14.10189 -13.95269 -13.50623 -13.30653 -13.21188 -13.16356 -12.68753 -12.62389 -12.52405 -12.43342 -12.32024 -12.13603 -11.90330 -11.52678 -11.37622 -10.94564 -10.86785 -10.23832 -9.67283 -8.92021 -8.65967 -8.58014 -6.53789 0.33118 0.40670 0.53920 1.14225 1.21038 1.27522 1.36583 1.46095 1.70277 2.10170 2.18466 2.43245 2.70311 3.08440 3.42229 3.70996 3.71917 4.09925 4.11832 4.16688 4.18588 4.36212 4.40747 4.48539 4.49620 4.62440 4.66704 4.77005 4.85554 4.88860 4.94357 5.21597 5.29784 5.44911 5.55857 5.57084 5.64842 5.71785 5.93689 5.97158 6.36167 6.76134 6.95522 7.12277 7.43223 8.44510 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.003304 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.490160 B = 8472.036571 C = 9529.951814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 H 0.131 0.869 4 C -0.088 4.088 5 S -0.191 6.191 6 C -0.095 4.095 7 C 0.505 3.495 8 O -0.553 6.553 9 N -0.415 5.415 10 C -0.365 4.365 11 H 0.093 0.907 12 C 0.062 3.938 13 N -0.885 5.885 14 Si 0.911 3.089 15 H -0.238 1.238 16 H -0.286 1.286 17 H -0.281 1.281 18 C 0.125 3.875 19 C -0.174 4.174 20 C -0.108 4.108 21 C -0.155 4.155 22 C -0.105 4.105 23 C -0.202 4.202 24 C 0.498 3.502 25 O -0.550 6.550 26 O -0.504 6.504 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.285 0.715 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.167 0.833 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 6.025 -9.795 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 H 0.149 0.851 4 C -0.237 4.237 5 S 0.036 5.964 6 C -0.245 4.245 7 C 0.296 3.704 8 O -0.436 6.436 9 N -0.126 5.126 10 C -0.492 4.492 11 H 0.111 0.889 12 C -0.146 4.146 13 N -0.519 5.519 14 Si 0.737 3.263 15 H -0.161 1.161 16 H -0.213 1.213 17 H -0.207 1.207 18 C 0.029 3.971 19 C -0.195 4.195 20 C -0.126 4.126 21 C -0.174 4.174 22 C -0.124 4.124 23 C -0.222 4.222 24 C 0.340 3.660 25 O -0.441 6.441 26 O -0.317 6.317 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.183 0.817 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -7.719 7.232 -9.358 14.123 hybrid contribution 1.876 -1.609 -0.106 2.473 sum -5.844 5.624 -9.463 12.463 Atomic orbital electron populations 1.21840 0.89875 1.03634 1.04624 1.20657 0.99850 1.01108 0.86543 0.85098 1.23342 1.04662 1.01830 0.93824 1.86891 1.74730 1.36631 0.98187 1.23215 1.06006 1.02412 0.92875 1.20416 0.80788 0.83542 0.85669 1.90248 1.40862 1.26391 1.86119 1.41378 1.40164 1.28534 1.02521 1.18876 0.97375 0.94584 1.38322 0.88945 1.25772 0.94946 0.98516 0.95331 1.69704 1.12764 1.29182 1.40295 0.86357 0.77109 0.80954 0.81897 1.16125 1.21277 1.20676 1.18730 0.97216 0.94497 0.86614 1.21078 1.04654 1.01673 0.92050 1.21244 0.97952 0.96602 0.96829 1.21421 1.00518 0.96264 0.99185 1.21438 0.99151 1.00216 0.91564 1.22791 1.01265 0.95876 1.02265 1.23316 0.75762 0.81505 0.85465 1.90749 1.37596 1.27858 1.87855 1.84475 1.71784 1.58889 1.16591 0.89268 0.91816 0.90330 0.89619 0.89210 0.87084 0.86717 0.90492 0.86326 0.83947 0.82832 0.83440 0.81673 0.70833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.95 71.98 0.64 -1.70 16 2 C -0.06 -1.18 2.83 -11.54 -0.03 -1.21 16 3 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.09 -2.18 4.73 71.98 0.34 -1.84 16 5 S -0.19 -5.99 19.69 -56.49 -1.11 -7.10 16 6 C -0.09 -3.57 5.24 71.24 0.37 -3.19 16 7 C 0.50 22.84 7.59 87.66 0.67 23.50 16 8 O -0.55 -25.79 12.29 -3.03 -0.04 -25.83 16 9 N -0.42 -20.14 2.26 -458.89 -1.04 -21.18 16 10 C -0.36 -18.65 7.96 84.02 0.67 -17.98 16 11 H 0.09 4.93 7.90 -2.91 -0.02 4.91 16 12 C 0.06 3.21 4.30 84.91 0.36 3.57 16 13 N -0.88 -47.38 13.96 21.65 0.30 -47.08 16 14 Si 0.91 42.94 24.16 68.60 1.66 44.59 16 15 H -0.24 -10.53 6.05 99.48 0.60 -9.92 16 16 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.28 -14.23 6.90 99.48 0.69 -13.54 16 18 C 0.12 5.84 4.40 38.22 0.17 6.01 16 19 C -0.17 -7.66 5.77 22.40 0.13 -7.53 16 20 C -0.11 -3.86 9.77 22.25 0.22 -3.65 16 21 C -0.16 -4.90 10.04 22.30 0.22 -4.67 16 22 C -0.11 -3.64 10.04 22.25 0.22 -3.41 16 23 C -0.20 -8.70 9.03 22.41 0.20 -8.50 16 24 C 0.50 9.77 7.63 71.23 0.54 10.31 16 25 O -0.55 -14.88 16.68 21.97 0.37 -14.52 16 26 O -0.50 -6.52 13.33 -51.43 -0.69 -7.20 16 27 H 0.09 1.14 8.11 -2.39 -0.02 1.12 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.47 7.14 -2.38 -0.02 1.45 16 30 H 0.09 2.25 7.96 -2.39 -0.02 2.23 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.11 4.26 7.89 -2.39 -0.02 4.24 16 33 H 0.11 4.06 8.12 -2.39 -0.02 4.04 16 34 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.12 5.66 5.70 -2.91 -0.02 5.64 16 36 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 39 H 0.17 7.53 4.58 -58.75 -0.27 7.26 16 40 H 0.43 1.99 9.10 -74.05 -0.67 1.32 16 Total: -1.00 -65.94 344.12 4.21 -61.74 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.02 Total: 26.86 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.73 Total: -10.29 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -0.74 Total: -68.26 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.36 Total: -47.55 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.66 Total: 44.59 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.11 Total: -7.10 kcal Total: -65.94 4.21 -61.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.615 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds