Wall clock time and date at job start Tue Mar 31 2020 13:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47256 * 2 1 4 4 N 1.46501 * 109.47150 * 239.99474 * 2 1 3 5 5 C 1.39988 * 119.99747 * 85.00403 * 4 2 1 6 6 C 1.40432 * 125.97374 * 0.02562 * 5 4 2 7 7 C 1.35251 * 107.86019 * 179.73886 * 6 5 4 8 8 N 1.34962 * 107.86128 * 0.42675 * 7 6 5 9 9 C 1.46500 * 125.97410 * 179.83595 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.71196 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 N 1.31219 * 125.97677 * 180.02562 * 5 4 2 19 19 C 1.50698 * 109.46837 * 119.99842 * 2 1 3 20 20 C 1.38271 * 119.97036 * 79.72704 * 19 2 1 21 21 C 1.38193 * 120.05046 * 179.72704 * 20 19 2 22 22 C 1.38451 * 119.98585 * 0.56955 * 21 20 19 23 23 F 1.35095 * 120.03338 * 179.73090 * 22 21 20 24 24 C 1.38556 * 119.93586 * 359.70013 * 22 21 20 25 25 Cl 1.73594 * 120.02020 * 180.02562 * 24 22 21 26 26 C 1.38221 * 119.97120 * 259.99757 * 19 2 1 27 27 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47220 * 300.00474 * 1 2 3 29 29 H 1.09007 * 109.47066 * 60.00377 * 1 2 3 30 30 H 0.96999 * 120.00325 * 265.00515 * 4 2 1 31 31 H 1.07998 * 126.07497 * 0.02562 * 6 5 4 32 32 H 1.08000 * 126.07179 * 180.26370 * 7 6 5 33 33 H 1.09004 * 109.47078 * 4.71958 * 9 8 7 34 34 H 1.08993 * 109.47364 * 244.71729 * 9 8 7 35 35 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 36 36 H 1.08004 * 119.97428 * 359.97438 * 20 19 2 37 37 H 1.07991 * 120.01039 * 180.27049 * 21 20 19 38 38 H 1.07993 * 119.99022 * 0.02562 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1521 0.0076 -2.4020 6 6 1.8567 1.3652 -2.6062 7 6 2.1235 1.6578 -3.8995 8 7 2.5618 0.5299 -4.4971 9 6 2.9597 0.3987 -5.9010 10 6 4.3598 -0.1538 -5.9767 11 1 4.8990 -0.3844 -5.0699 12 6 4.9523 -0.3647 -7.2036 13 7 4.2936 -0.0888 -8.3080 14 14 6.6874 -1.0501 -7.2976 15 1 7.0886 -1.1887 -8.7206 16 1 7.6228 -0.1259 -6.6073 17 1 6.7303 -2.3806 -6.6394 18 7 2.5755 -0.4919 -3.5391 19 6 2.0323 -0.7104 1.2305 20 6 2.0611 -2.0923 1.2669 21 6 2.5266 -2.7454 2.3923 22 6 2.9535 -2.0158 3.4888 23 9 3.4037 -2.6533 4.5915 24 6 2.9192 -0.6311 3.4538 25 17 3.4546 0.2859 4.8271 26 6 2.4585 0.0200 2.3238 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 2.2490 -1.6319 -1.1525 31 1 1.4869 2.0546 -1.8616 32 1 2.0043 2.6221 -4.3709 33 1 2.9289 1.3772 -6.3803 34 1 2.2741 -0.2777 -6.4113 35 1 3.3925 0.2669 -8.2594 36 1 1.7232 -2.6617 0.4136 37 1 2.5529 -3.8247 2.4183 38 1 2.4310 1.0992 2.2960 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:52 Heat of formation + Delta-G solvation = 50.907772 kcal Electronic energy + Delta-G solvation = -23428.142220 eV Core-core repulsion = 19633.537918 eV Total energy + Delta-G solvation = -3794.604302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.29910 -40.44651 -39.82854 -37.14013 -36.14507 -33.90370 -32.17459 -31.41219 -30.06454 -29.53376 -28.66698 -26.09826 -24.08634 -23.69191 -22.88350 -21.50564 -20.30706 -19.51007 -18.23825 -17.23117 -17.11728 -16.67651 -16.22829 -16.10504 -15.39333 -14.69999 -14.49955 -14.28455 -14.15745 -13.96077 -13.78085 -13.64345 -13.30091 -13.07039 -12.97805 -12.35958 -12.19394 -12.14447 -11.82910 -11.76774 -11.63002 -11.46517 -11.15567 -11.07521 -10.76599 -10.15815 -9.99969 -9.71084 -9.41365 -8.99049 -8.88501 -8.56097 -8.03069 -7.14356 -6.55609 -4.29644 0.53081 0.64540 1.60778 2.78948 2.92715 3.16031 3.38677 3.40805 3.59574 3.63831 3.68136 4.04110 4.17164 4.25635 4.42717 4.65303 4.75053 4.91029 5.14298 5.17690 5.23173 5.33668 5.41522 5.46727 5.54997 5.64572 5.70343 5.80721 5.96766 6.07335 6.18500 6.26418 6.41208 6.53462 6.72839 6.96010 7.52501 7.70513 7.89450 8.06279 8.38347 8.61308 8.77645 9.38540 10.81389 Molecular weight = 323.09amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.002495 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.638601 B =11221.248144 C =11978.115198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.211 3.789 3 H 0.089 0.911 4 N -0.722 5.722 5 C 0.308 3.692 6 C -0.330 4.330 7 C 0.066 3.934 8 N -0.325 5.325 9 C 0.251 3.749 10 C -0.605 4.605 11 H 0.063 0.937 12 C 0.022 3.978 13 N -0.906 5.906 14 Si 1.076 2.924 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.285 1.285 18 N -0.329 5.329 19 C -0.081 4.081 20 C -0.076 4.076 21 C -0.137 4.137 22 C 0.105 3.895 23 F -0.128 7.128 24 C -0.071 4.071 25 Cl -0.050 7.050 26 C -0.072 4.072 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.397 0.603 31 H 0.132 0.868 32 H 0.162 0.838 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.267 0.733 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 0.454 23.509 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.105 3.895 3 H 0.107 0.893 4 N -0.366 5.366 5 C 0.052 3.948 6 C -0.363 4.363 7 C -0.085 4.085 8 N -0.104 5.104 9 C 0.133 3.867 10 C -0.643 4.643 11 H 0.081 0.919 12 C -0.182 4.182 13 N -0.542 5.542 14 Si 0.903 3.097 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.212 1.212 18 N -0.161 5.161 19 C -0.082 4.082 20 C -0.095 4.095 21 C -0.156 4.156 22 C 0.085 3.915 23 F -0.106 7.106 24 C -0.099 4.099 25 Cl -0.021 7.021 26 C -0.091 4.091 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.233 0.767 31 H 0.150 0.850 32 H 0.180 0.820 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.778 -0.830 21.884 22.649 hybrid contribution -1.284 0.873 1.862 2.425 sum -7.061 0.044 23.746 24.774 Atomic orbital electron populations 1.22329 0.94786 1.02699 1.02514 1.19471 0.93530 0.95889 0.80629 0.89264 1.43430 1.76890 1.11580 1.04666 1.19130 0.97642 0.90828 0.87209 1.20728 1.22994 0.95450 0.97173 1.22345 0.99481 0.93017 0.93683 1.48715 1.46911 1.04770 1.10017 1.19676 0.97425 0.98033 0.71604 1.22110 0.98634 1.47592 0.96014 0.91871 1.25911 1.05784 0.95125 0.91423 1.70853 1.13292 1.40863 1.29191 0.83429 0.73744 0.76442 0.76075 1.20558 1.21261 1.21150 1.77455 1.29279 1.12994 0.96326 1.20058 0.98812 0.93836 0.95517 1.20980 0.97012 0.93901 0.97580 1.21146 1.01064 1.01210 0.92152 1.17436 1.00545 0.88611 0.84883 1.91541 1.86557 1.81715 1.50831 1.20943 1.06330 0.90453 0.92162 1.98394 1.88599 1.73319 1.41832 1.20819 0.96852 1.01029 0.90416 0.92229 0.91907 0.91159 0.76691 0.85037 0.82026 0.93953 0.95002 0.92323 0.84102 0.83550 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.21 2.14 2.77 -69.08 -0.19 1.95 16 3 H 0.09 0.90 7.00 -51.93 -0.36 0.54 16 4 N -0.72 -9.92 5.23 -54.70 -0.29 -10.21 16 5 C 0.31 5.64 8.14 -154.55 -1.26 4.38 16 6 C -0.33 -5.58 9.92 -39.82 -0.40 -5.97 16 7 C 0.07 1.24 11.44 -17.24 -0.20 1.04 16 8 N -0.33 -7.43 3.67 -62.56 -0.23 -7.66 16 9 C 0.25 6.34 5.57 -5.19 -0.03 6.31 16 10 C -0.61 -17.09 9.24 -34.44 -0.32 -17.41 16 11 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 12 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 13 N -0.91 -26.46 13.65 55.43 0.76 -25.70 16 14 Si 1.08 25.06 29.90 -169.99 -5.08 19.97 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 N -0.33 -7.49 12.42 31.41 0.39 -7.10 16 19 C -0.08 -0.73 4.95 -104.62 -0.52 -1.25 16 20 C -0.08 -0.64 9.05 -39.59 -0.36 -1.00 16 21 C -0.14 -1.14 10.03 -39.52 -0.40 -1.53 16 22 C 0.11 1.03 7.28 -39.39 -0.29 0.74 16 23 F -0.13 -1.35 16.84 2.25 0.04 -1.32 16 24 C -0.07 -0.68 6.33 -39.44 -0.25 -0.93 16 25 Cl -0.05 -0.47 28.62 -51.86 -1.48 -1.96 16 26 C -0.07 -0.63 9.45 -39.56 -0.37 -1.00 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 5.18 7.01 -40.82 -0.29 4.90 16 31 H 0.13 1.79 7.45 -52.49 -0.39 1.40 16 32 H 0.16 2.44 8.06 -52.49 -0.42 2.01 16 33 H 0.04 1.03 7.94 -51.93 -0.41 0.62 16 34 H 0.03 0.84 8.00 -51.93 -0.42 0.43 16 35 H 0.27 7.60 7.22 -40.82 -0.29 7.31 16 36 H 0.14 1.03 6.93 -52.48 -0.36 0.66 16 37 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.15 1.02 8.03 -52.49 -0.42 0.60 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -32.00 348.69 -9.23 -41.23 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.27 Total: 2.75 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -4.32 Total: -15.27 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.63 Total: -50.66 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.97 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.00 -9.23 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.138 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds