Wall clock time and date at job start Tue Mar 31 2020 13:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47360 * 2 1 4 4 C 1.52997 * 109.47327 * 120.00742 * 2 1 3 5 5 C 1.50702 * 109.47257 * 184.99854 * 4 2 1 6 6 O 1.20833 * 119.99799 * 359.97438 * 5 4 2 7 7 O 1.34226 * 120.00001 * 179.97438 * 5 4 2 8 8 S 1.81408 * 109.46806 * 240.00584 * 2 1 3 9 9 C 1.81399 * 103.00137 * 64.99782 * 8 2 1 10 10 C 1.50696 * 109.46872 * 179.97438 * 9 8 2 11 11 O 1.21277 * 120.00280 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99622 * 180.02562 * 10 9 8 13 13 C 1.39232 * 119.99749 * 184.03395 * 12 10 9 14 14 C 1.39486 * 119.83507 * 324.49883 * 13 12 10 15 15 C 1.36373 * 120.16955 * 179.72065 * 14 13 12 16 16 C 1.40870 * 119.82617 * 0.57645 * 15 14 13 17 17 C 1.41156 * 120.16445 * 179.68078 * 16 15 14 18 18 H 1.07997 * 119.99929 * 214.80120 * 17 16 15 19 19 C 1.39904 * 120.00136 * 34.79563 * 17 16 15 20 20 N 1.30876 * 119.99759 * 355.56879 * 19 17 16 21 21 Si 1.86798 * 119.99924 * 175.56026 * 19 17 16 22 22 H 1.48495 * 109.46987 * 60.00922 * 21 19 17 23 23 H 1.48501 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47459 * 300.00052 * 21 19 17 25 25 C 1.40873 * 119.67340 * 359.69512 * 16 15 14 26 26 C 1.36366 * 119.82815 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46766 * 299.99188 * 1 2 3 29 29 H 1.08998 * 109.47389 * 59.99198 * 1 2 3 30 30 H 1.09000 * 109.47090 * 304.99469 * 4 2 1 31 31 H 1.09003 * 109.47582 * 64.99823 * 4 2 1 32 32 H 0.96704 * 116.99839 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.46991 * 60.00119 * 9 8 2 34 34 H 1.08996 * 109.47306 * 300.00219 * 9 8 2 35 35 H 0.97004 * 119.99982 * 4.30751 * 12 10 9 36 36 H 1.08001 * 119.91117 * 0.02562 * 14 13 12 37 37 H 1.07997 * 120.08549 * 180.25583 * 15 14 13 38 38 H 0.97000 * 119.99745 * 179.97438 * 20 19 17 39 39 H 1.08004 * 120.08508 * 179.97438 * 25 16 15 40 40 H 1.07998 * 119.91563 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3126 6 8 4.1428 -0.0234 0.4471 7 8 4.2122 -1.1776 2.3304 8 16 2.1346 -0.8550 -1.4813 9 6 1.5663 0.2155 -2.8310 10 6 1.9982 -0.3687 -4.1512 11 8 2.6270 -1.4053 -4.1790 12 7 1.6856 0.2610 -5.3012 13 6 2.0108 -0.3204 -6.5238 14 6 3.1914 -1.0521 -6.6521 15 6 3.5139 -1.6292 -7.8449 16 6 2.6571 -1.4747 -8.9524 17 6 2.9872 -2.0633 -10.1921 18 1 2.7307 -1.5616 -11.1134 19 6 3.6467 -3.2967 -10.2274 20 7 4.0348 -3.8632 -9.1133 21 14 3.9731 -4.1348 -11.8646 22 1 4.8152 -3.2534 -12.7126 23 1 4.6799 -5.4197 -11.6307 24 1 2.6833 -4.3979 -12.5518 25 6 1.4693 -0.7295 -8.8165 26 6 1.1575 -0.1631 -7.6159 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6055 -0.2619 2.1369 31 1 1.7517 -1.7717 1.2054 32 1 5.1746 -1.0833 2.3278 33 1 2.0000 1.2086 -2.7142 34 1 0.4791 0.2884 -2.8037 35 1 1.2377 1.1211 -5.2770 36 1 3.8494 -1.1659 -5.8033 37 1 4.4262 -2.1989 -7.9416 38 1 4.4917 -4.7185 -9.1377 39 1 0.8078 -0.6064 -9.6614 40 1 0.2475 0.4089 -7.5103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090097151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:47 Heat of formation + Delta-G solvation = -129.832209 kcal Electronic energy + Delta-G solvation = -23590.943767 eV Core-core repulsion = 19881.713251 eV Total energy + Delta-G solvation = -3709.230515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23390 -41.13155 -39.06292 -37.17250 -36.21148 -35.61819 -34.73950 -31.95701 -31.35178 -30.26562 -29.27991 -26.63673 -24.03288 -23.39325 -22.91843 -21.91568 -21.16320 -19.24443 -18.96862 -18.66334 -17.96354 -17.67473 -17.58514 -17.06457 -16.61486 -16.56176 -15.79190 -15.50027 -15.19820 -15.00448 -14.66222 -14.40444 -14.15821 -13.98644 -13.81962 -13.48643 -13.36979 -13.26360 -13.02601 -12.83436 -12.71061 -12.43964 -12.40125 -12.32259 -12.23621 -11.79763 -11.72658 -11.55004 -11.24296 -10.83594 -10.65553 -10.52835 -9.47020 -8.78643 -8.53293 -8.50225 -6.34192 0.47303 0.78954 1.11742 1.31211 1.37951 1.44312 1.51260 1.56789 1.72743 2.18433 2.22666 2.31557 2.80779 3.52413 3.65956 3.77778 3.95896 4.06547 4.20091 4.20623 4.42767 4.46851 4.50911 4.54407 4.64337 4.87662 4.97566 5.00026 5.10678 5.14879 5.32436 5.32725 5.40261 5.69695 5.69951 5.84589 6.06098 6.13138 6.33531 6.63396 6.69866 6.94626 7.00854 7.04609 7.34251 8.42380 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.002368 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.927038 B =11821.119043 C =12662.362031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 H 0.097 0.903 4 C -0.092 4.092 5 C 0.466 3.534 6 O -0.534 6.534 7 O -0.518 6.518 8 S -0.252 6.252 9 C -0.100 4.100 10 C 0.508 3.492 11 O -0.561 6.561 12 N -0.638 5.638 13 C 0.019 3.981 14 C -0.109 4.109 15 C -0.170 4.170 16 C 0.066 3.934 17 C -0.496 4.496 18 H 0.082 0.918 19 C 0.020 3.980 20 N -0.848 5.848 21 Si 0.992 3.008 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.209 4.209 26 C -0.104 4.104 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.121 0.879 32 H 0.424 0.576 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.422 0.578 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.282 0.718 39 H 0.115 0.885 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 10.043 21.639 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 H 0.115 0.885 4 C -0.130 4.130 5 C 0.309 3.691 6 O -0.423 6.423 7 O -0.332 6.332 8 S -0.026 6.026 9 C -0.251 4.251 10 C 0.295 3.705 11 O -0.439 6.439 12 N -0.284 5.284 13 C -0.074 4.074 14 C -0.130 4.130 15 C -0.190 4.190 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.476 5.476 21 Si 0.813 3.187 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.229 4.229 26 C -0.124 4.124 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.139 0.861 32 H 0.285 0.715 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.260 0.740 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.852 8.302 21.442 24.297 hybrid contribution 0.570 0.774 -0.749 1.219 sum -7.282 9.077 20.693 23.741 Atomic orbital electron populations 1.22100 0.89960 1.04033 1.04178 1.23183 1.00420 1.01992 0.92510 0.88488 1.21311 0.86435 1.05552 0.99714 1.23887 0.92804 0.74504 0.77902 1.90816 1.71175 1.41244 1.39041 1.84472 1.28547 1.72497 1.47708 1.87980 1.76856 1.36913 1.00816 1.23358 1.07243 1.02948 0.91519 1.20536 0.79693 0.84265 0.85984 1.90762 1.40246 1.25614 1.87278 1.42728 1.59517 1.23220 1.02937 1.17318 0.96685 1.07056 0.86361 1.20645 0.96222 0.99515 0.96584 1.21163 1.01051 1.03097 0.93726 1.18079 0.90906 0.90787 0.93887 1.19757 1.34669 1.04476 0.93745 0.90010 1.26897 0.92400 0.97930 1.01874 1.69922 1.30903 1.16601 1.30149 0.85100 0.79414 0.77376 0.76829 1.18095 1.19908 1.18196 1.20980 0.97753 1.06353 0.97822 1.20450 0.98265 1.01589 0.92061 0.91127 0.88616 0.91559 0.82232 0.86121 0.71465 0.84910 0.83810 0.74020 0.89098 0.87931 0.90781 0.86655 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.10 71.98 0.66 -0.58 16 2 C -0.05 -0.76 2.44 30.59 0.07 -0.69 16 3 H 0.10 1.41 7.96 -2.39 -0.02 1.39 16 4 C -0.09 -1.06 5.28 29.85 0.16 -0.90 16 5 C 0.47 8.59 8.04 71.24 0.57 9.16 16 6 O -0.53 -14.54 15.55 21.94 0.34 -14.20 16 7 O -0.52 -7.17 13.42 -51.38 -0.69 -7.86 16 8 S -0.25 -6.86 18.74 -56.49 -1.06 -7.92 16 9 C -0.10 -2.30 6.12 71.23 0.44 -1.87 16 10 C 0.51 17.99 7.68 87.65 0.67 18.66 16 11 O -0.56 -26.84 13.31 -3.02 -0.04 -26.88 16 12 N -0.64 -21.14 5.30 -303.11 -1.61 -22.75 16 13 C 0.02 0.86 6.30 38.57 0.24 1.10 16 14 C -0.11 -5.84 8.61 22.14 0.19 -5.65 16 15 C -0.17 -9.90 8.61 22.48 0.19 -9.71 16 16 C 0.07 3.70 5.55 -21.27 -0.12 3.58 16 17 C -0.50 -27.63 9.02 23.39 0.21 -27.42 16 18 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 19 C 0.02 1.09 5.42 85.24 0.46 1.55 16 20 N -0.85 -48.60 10.60 21.82 0.23 -48.37 16 21 Si 0.99 40.55 29.56 68.60 2.03 42.58 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 25 C -0.21 -10.07 9.74 22.48 0.22 -9.85 16 26 C -0.10 -4.32 9.90 22.13 0.22 -4.10 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 0.31 8.14 -2.38 -0.02 0.30 16 29 H 0.07 0.55 6.92 -2.39 -0.02 0.53 16 30 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.42 3.12 9.10 -74.05 -0.67 2.45 16 33 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.14 2.21 7.14 -2.39 -0.02 2.20 16 35 H 0.42 9.47 8.82 -92.71 -0.82 8.65 16 36 H 0.09 5.07 6.25 -2.91 -0.02 5.05 16 37 H 0.10 6.42 6.13 -2.91 -0.02 6.41 16 38 H 0.28 14.89 8.30 -92.71 -0.77 14.12 16 39 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 40 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -84.33 354.92 3.00 -81.33 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.40 Total: 30.78 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 4.19 Total: -26.71 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.38 Total: -71.12 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.39 Total: -48.94 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -1.06 Total: -7.92 kcal Total: -84.33 3.00 -81.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090097151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.504 kcal (2) G-P(sol) polarization free energy of solvation -84.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds