Wall clock time and date at job start Tue Mar 31 2020 13:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46947 * 2 1 4 4 C 1.52992 * 109.47501 * 239.99797 * 2 1 3 5 5 C 1.50704 * 109.47283 * 174.99999 * 4 2 1 6 6 O 1.20821 * 119.99996 * 0.02562 * 5 4 2 7 7 O 1.34229 * 119.99626 * 179.97438 * 5 4 2 8 8 S 1.81406 * 109.46808 * 119.99788 * 2 1 3 9 9 C 1.81403 * 103.00044 * 295.00169 * 8 2 1 10 10 C 1.50700 * 109.47003 * 180.02562 * 9 8 2 11 11 O 1.21278 * 119.99996 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00059 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.00177 * 175.70844 * 12 10 9 14 14 C 1.39482 * 119.83510 * 215.01365 * 13 12 10 15 15 C 1.36371 * 120.17089 * 179.76001 * 14 13 12 16 16 C 1.40871 * 119.82650 * 0.51206 * 15 14 13 17 17 C 1.41156 * 120.16168 * 179.71915 * 16 15 14 18 18 H 1.08005 * 119.99590 * 214.80173 * 17 16 15 19 19 C 1.39902 * 120.00225 * 34.80682 * 17 16 15 20 20 N 1.30870 * 119.99862 * 355.55606 * 19 17 16 21 21 Si 1.86797 * 120.00047 * 175.56102 * 19 17 16 22 22 H 1.48499 * 109.47497 * 59.99521 * 21 19 17 23 23 H 1.48502 * 109.46976 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47003 * 299.99665 * 21 19 17 25 25 C 1.40870 * 119.67244 * 359.74166 * 16 15 14 26 26 C 1.36368 * 119.82567 * 0.02562 * 25 16 15 27 27 H 1.08994 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47742 * 300.00466 * 1 2 3 29 29 H 1.09001 * 109.46611 * 60.00398 * 1 2 3 30 30 H 1.09001 * 109.47369 * 54.99878 * 4 2 1 31 31 H 1.09000 * 109.47342 * 295.00412 * 4 2 1 32 32 H 0.96708 * 116.99413 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.46904 * 300.00132 * 9 8 2 34 34 H 1.09003 * 109.46817 * 60.00168 * 9 8 2 35 35 H 0.97002 * 119.99501 * 355.71090 * 12 10 9 36 36 H 1.08004 * 119.91365 * 0.02562 * 14 13 12 37 37 H 1.08000 * 120.08820 * 180.25150 * 15 14 13 38 38 H 0.97003 * 119.99849 * 180.02562 * 20 19 17 39 39 H 1.07995 * 120.08556 * 179.97438 * 25 16 15 40 40 H 1.08000 * 119.91368 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 8 4.1428 -0.0233 -0.4472 7 8 4.2123 -1.1782 -2.3299 8 16 2.1346 -0.8551 1.4812 9 6 1.5662 0.2154 2.8310 10 6 1.9982 -0.3688 4.1513 11 8 2.6278 -1.4050 4.1789 12 7 1.6848 0.2602 5.3013 13 6 2.0052 -0.3239 6.5239 14 6 1.1517 -0.1620 7.6152 15 6 1.4563 -0.7351 8.8145 16 6 2.6420 -1.4831 8.9526 17 6 2.9673 -2.0744 10.1923 18 1 3.9992 -2.1428 10.5038 19 6 1.9531 -2.5719 11.0176 20 7 0.6984 -2.4117 10.6816 21 14 2.3897 -3.4647 12.5993 22 1 3.1591 -2.5547 13.4853 23 1 1.1444 -3.8893 13.2879 24 1 3.2126 -4.6596 12.2822 25 6 3.5017 -1.6377 7.8473 26 6 3.1812 -1.0626 6.6531 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6055 -0.2618 -2.1369 31 1 1.7517 -1.7715 -1.2055 32 1 5.1747 -1.0838 -2.3273 33 1 2.0000 1.2085 2.7142 34 1 0.4790 0.2881 2.8037 35 1 1.2359 1.1197 5.2771 36 1 0.2450 0.4151 7.5088 37 1 0.7925 -0.6123 9.6575 38 1 -0.0048 -2.7563 11.2540 39 1 4.4126 -2.2094 7.9458 40 1 3.8394 -1.1799 5.8050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090097152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:50 Heat of formation + Delta-G solvation = -129.551067 kcal Electronic energy + Delta-G solvation = -23511.367568 eV Core-core repulsion = 19802.149244 eV Total energy + Delta-G solvation = -3709.218324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23960 -41.13107 -39.07439 -37.16712 -36.20281 -35.61644 -34.76247 -31.89425 -31.45366 -30.23151 -29.27564 -26.64168 -24.03088 -23.53465 -22.74615 -21.92414 -21.21745 -19.29532 -18.96150 -18.58553 -18.00586 -17.65384 -17.56203 -17.07693 -16.69430 -16.54505 -15.75425 -15.50091 -15.20717 -15.02309 -14.66269 -14.38359 -14.16507 -14.02786 -13.72033 -13.58812 -13.30763 -13.24398 -13.02469 -12.86505 -12.76808 -12.52571 -12.43240 -12.38832 -12.23889 -11.81514 -11.54377 -11.41865 -11.23943 -10.88734 -10.66340 -10.64620 -9.49370 -8.77204 -8.53366 -8.51154 -6.34859 0.47224 0.76807 1.11273 1.31769 1.38955 1.44535 1.50843 1.56499 1.72014 2.18820 2.23095 2.31293 2.78897 3.52555 3.63479 3.77009 3.95910 4.06500 4.20326 4.21065 4.37872 4.50343 4.51386 4.54778 4.64727 4.87458 4.91013 4.99830 5.10946 5.12474 5.31194 5.32395 5.40851 5.67370 5.70467 5.87863 5.99317 6.11182 6.36988 6.62290 6.66804 6.94887 6.97426 7.05259 7.31692 8.40854 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.029882 B = 0.002189 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.805538 B =12787.425176 C =13244.740578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 H 0.097 0.903 4 C -0.092 4.092 5 C 0.467 3.533 6 O -0.533 6.533 7 O -0.518 6.518 8 S -0.247 6.247 9 C -0.102 4.102 10 C 0.510 3.490 11 O -0.560 6.560 12 N -0.638 5.638 13 C 0.020 3.980 14 C -0.115 4.115 15 C -0.159 4.159 16 C 0.068 3.932 17 C -0.498 4.498 18 H 0.072 0.928 19 C 0.028 3.972 20 N -0.840 5.840 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.266 1.266 24 H -0.266 1.266 25 C -0.223 4.223 26 C -0.098 4.098 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.159 0.841 31 H 0.121 0.879 32 H 0.424 0.576 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.421 0.579 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.286 0.714 39 H 0.093 0.907 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 8.167 -23.619 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 H 0.115 0.885 4 C -0.130 4.130 5 C 0.310 3.690 6 O -0.422 6.422 7 O -0.332 6.332 8 S -0.021 6.021 9 C -0.253 4.253 10 C 0.297 3.703 11 O -0.438 6.438 12 N -0.284 5.284 13 C -0.074 4.074 14 C -0.135 4.135 15 C -0.179 4.179 16 C 0.066 3.934 17 C -0.529 4.529 18 H 0.090 0.910 19 C -0.184 4.184 20 N -0.467 5.467 21 Si 0.810 3.190 22 H -0.182 1.182 23 H -0.191 1.191 24 H -0.191 1.191 25 C -0.243 4.243 26 C -0.118 4.118 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.177 0.823 31 H 0.139 0.861 32 H 0.285 0.715 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.259 0.741 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.179 6.584 -23.253 24.525 hybrid contribution 0.318 0.909 0.902 1.319 sum -3.861 7.493 -22.351 23.888 Atomic orbital electron populations 1.22100 0.90071 1.04030 1.04127 1.23179 1.00350 1.02032 0.92604 0.88498 1.21306 0.86497 1.05559 0.99663 1.23863 0.92762 0.74509 0.77910 1.90811 1.71156 1.41224 1.39027 1.84476 1.28551 1.72449 1.47754 1.87900 1.76748 1.36849 1.00624 1.23367 1.07176 1.03059 0.91657 1.20490 0.79702 0.84229 0.85845 1.90727 1.40301 1.25470 1.87279 1.42754 1.59490 1.23180 1.02983 1.17287 0.96488 1.07349 0.86239 1.20569 0.98146 1.02083 0.92699 1.21197 0.99841 0.99326 0.97570 1.18043 0.92508 0.89955 0.92907 1.19699 0.94721 1.35939 1.02527 0.90995 1.26745 0.94178 0.95542 1.01980 1.69810 1.00969 1.38101 1.37856 0.85148 0.78691 0.78724 0.76456 1.18192 1.19065 1.19121 1.20920 1.02725 1.07215 0.93447 1.20493 0.95817 0.99045 0.96419 0.91103 0.91659 0.88662 0.82307 0.86076 0.71453 0.84901 0.84042 0.74150 0.85305 0.86079 0.90378 0.88850 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.10 71.98 0.66 -0.57 16 2 C -0.05 -0.74 2.44 30.59 0.07 -0.67 16 3 H 0.10 1.37 7.96 -2.39 -0.02 1.35 16 4 C -0.09 -1.01 5.28 29.85 0.16 -0.85 16 5 C 0.47 8.20 8.04 71.24 0.57 8.77 16 6 O -0.53 -13.98 15.55 21.98 0.34 -13.64 16 7 O -0.52 -6.74 13.42 -51.41 -0.69 -7.43 16 8 S -0.25 -6.50 18.74 -56.49 -1.06 -7.55 16 9 C -0.10 -2.30 6.12 71.24 0.44 -1.86 16 10 C 0.51 17.60 7.68 87.66 0.67 18.27 16 11 O -0.56 -25.54 13.29 -3.02 -0.04 -25.58 16 12 N -0.64 -21.21 5.30 -303.12 -1.61 -22.82 16 13 C 0.02 0.89 6.30 38.57 0.24 1.13 16 14 C -0.11 -5.16 9.90 22.13 0.22 -4.95 16 15 C -0.16 -8.40 8.62 22.48 0.19 -8.21 16 16 C 0.07 3.86 5.55 -21.27 -0.12 3.74 16 17 C -0.50 -27.95 9.02 23.39 0.21 -27.73 16 18 H 0.07 3.91 7.85 -2.91 -0.02 3.88 16 19 C 0.03 1.44 5.42 85.24 0.46 1.90 16 20 N -0.84 -44.70 10.60 21.82 0.23 -44.47 16 21 Si 0.99 39.71 29.56 68.60 2.03 41.73 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 25 C -0.22 -12.10 9.74 22.48 0.22 -11.88 16 26 C -0.10 -4.93 8.61 22.13 0.19 -4.74 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.55 6.92 -2.39 -0.02 0.53 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.42 2.74 9.10 -74.05 -0.67 2.07 16 33 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.14 2.20 7.14 -2.39 -0.02 2.18 16 35 H 0.42 9.81 8.82 -92.71 -0.82 8.99 16 36 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.12 6.60 6.13 -2.91 -0.02 6.58 16 38 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 39 H 0.09 4.92 8.06 -2.91 -0.02 4.89 16 40 H 0.10 5.24 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -80.50 354.89 3.00 -77.50 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.40 Total: 29.91 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 4.19 Total: -27.64 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.38 Total: -67.29 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -0.39 Total: -46.66 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.06 Total: -7.55 kcal Total: -80.50 3.00 -77.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090097152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.052 kcal (2) G-P(sol) polarization free energy of solvation -80.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds