Wall clock time and date at job start Tue Mar 31 2020 14:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47019 * 2 1 4 4 C 1.34753 * 116.99932 * 179.97438 * 3 2 1 5 5 O 1.21510 * 120.00539 * 0.02562 * 4 3 2 6 6 C 1.47388 * 120.00016 * 180.02562 * 4 3 2 7 7 C 1.39750 * 120.20514 * 0.02562 * 6 4 3 8 8 C 1.37768 * 119.91735 * 180.02562 * 7 6 4 9 9 C 1.38585 * 120.33793 * 0.02562 * 8 7 6 10 10 C 1.38020 * 120.41633 * 359.97438 * 9 8 7 11 11 C 1.38851 * 120.07452 * 0.02562 * 10 9 8 12 12 N 1.39254 * 120.16534 * 180.02562 * 11 10 9 13 13 C 1.46497 * 119.99930 * 89.97446 * 12 11 10 14 14 C 1.34777 * 119.99770 * 269.97630 * 12 11 10 15 15 O 1.21271 * 120.00355 * 359.97438 * 14 12 11 16 16 C 1.50707 * 119.99829 * 180.02562 * 14 12 11 17 17 S 1.80991 * 109.46944 * 179.97438 * 16 14 12 18 18 C 1.76204 * 99.99994 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99874 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00224 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99851 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99890 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47243 * 90.00537 * 22 20 18 24 24 H 1.48500 * 109.47173 * 210.00163 * 22 20 18 25 25 H 1.48504 * 109.47006 * 329.99946 * 22 20 18 26 26 H 1.08998 * 109.47345 * 60.00057 * 1 2 3 27 27 H 1.09003 * 109.46871 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47384 * 299.99659 * 1 2 3 29 29 H 1.08997 * 109.47037 * 240.00009 * 2 1 3 30 30 H 1.08998 * 109.47345 * 119.99943 * 2 1 3 31 31 H 1.07996 * 120.03900 * 359.97438 * 7 6 4 32 32 H 1.08000 * 119.83361 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.79035 * 179.72871 * 9 8 7 34 34 H 1.07997 * 119.95730 * 180.02562 * 10 9 8 35 35 H 1.09006 * 109.46864 * 89.99975 * 13 12 11 36 36 H 1.08997 * 109.47090 * 209.99508 * 13 12 11 37 37 H 1.08998 * 109.47166 * 330.00247 * 13 12 11 38 38 H 1.08997 * 109.46800 * 299.99960 * 16 14 12 39 39 H 1.09003 * 109.47022 * 59.99341 * 16 14 12 40 40 H 0.97004 * 119.99997 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0901 0.5819 0.0005 6 6 3.9132 2.9075 0.0011 7 6 3.0659 4.0188 0.0017 8 6 3.5988 5.2892 0.0017 9 6 4.9726 5.4720 0.0007 10 6 5.8222 4.3843 0.0001 11 6 5.3036 3.0963 0.0001 12 7 6.1591 1.9975 0.0000 13 6 6.6096 1.4199 1.2687 14 6 6.5727 1.4656 -1.1672 15 8 6.1995 1.9435 -2.2174 16 6 7.4982 0.2761 -1.1673 17 16 7.8677 -0.2007 -2.8737 18 6 8.9357 -1.5719 -2.5838 19 1 9.1687 -1.8705 -1.5725 20 6 9.4776 -2.2682 -3.6553 21 7 10.2750 -3.2928 -3.4387 22 14 9.0740 -1.7521 -5.4046 23 1 10.0714 -0.7548 -5.8691 24 1 9.1127 -2.9414 -6.2930 25 1 7.7171 -1.1499 -5.4425 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9946 3.8818 0.0013 32 1 2.9427 6.1471 0.0026 33 1 5.3808 6.4719 -0.0037 34 1 6.8916 4.5353 -0.0003 35 1 5.9104 0.6452 1.5838 36 1 7.6000 0.9840 1.1381 37 1 6.6533 2.2005 2.0282 38 1 8.4237 0.5359 -0.6536 39 1 7.0189 -0.5571 -0.6532 40 1 10.6534 -3.7797 -4.1875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105968655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:31 Heat of formation + Delta-G solvation = -78.938776 kcal Electronic energy + Delta-G solvation = -24931.198158 eV Core-core repulsion = 21224.174548 eV Total energy + Delta-G solvation = -3707.023610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02844 -39.73156 -38.35840 -36.58964 -35.29271 -32.40105 -32.31279 -31.19997 -31.09081 -28.72197 -26.65720 -25.58569 -24.87789 -23.17922 -22.74905 -21.24300 -19.62499 -18.14367 -17.65348 -17.27040 -16.75099 -16.63764 -16.17000 -15.96437 -15.19708 -14.92909 -14.59572 -14.43594 -14.29801 -13.82065 -13.55047 -13.25538 -13.06654 -12.95739 -12.80831 -12.71718 -12.49406 -12.22749 -12.08322 -11.94265 -11.79297 -11.62970 -11.22613 -10.97792 -10.64591 -10.57981 -10.50411 -9.83849 -9.53563 -9.29835 -9.06912 -8.96656 -8.73921 -8.44153 -6.86847 -6.25312 -3.96165 0.46313 1.01621 2.45005 2.51328 2.71429 2.98885 3.20518 3.35577 3.49763 3.53939 3.62839 4.36687 4.45354 4.59750 4.70365 4.73428 4.74535 4.78695 4.96536 5.03512 5.09530 5.13364 5.13828 5.26418 5.27934 5.45643 5.47682 5.56167 5.62401 5.71374 5.78136 5.85247 5.89419 6.10357 6.10810 6.12184 6.34141 6.36743 6.87028 7.37533 7.71679 7.97987 8.45627 8.48070 9.21111 10.84006 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.003795 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.155204 B = 7375.717857 C = 8458.876188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.358 6.358 4 C 0.505 3.495 5 O -0.483 6.483 6 C -0.124 4.124 7 C -0.059 4.059 8 C -0.133 4.133 9 C -0.077 4.077 10 C -0.123 4.123 11 C 0.216 3.784 12 N -0.580 5.580 13 C 0.086 3.914 14 C 0.549 3.451 15 O -0.513 6.513 16 C -0.115 4.115 17 S -0.144 6.144 18 C -0.518 4.518 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.246 15.702 12.986 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.276 6.276 4 C 0.349 3.651 5 O -0.370 6.370 6 C -0.126 4.126 7 C -0.077 4.077 8 C -0.151 4.151 9 C -0.095 4.095 10 C -0.142 4.142 11 C 0.125 3.875 12 N -0.313 5.313 13 C -0.056 4.056 14 C 0.338 3.662 15 O -0.386 6.386 16 C -0.265 4.265 17 S 0.082 5.918 18 C -0.666 4.666 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.456 15.877 11.348 26.183 hybrid contribution 0.477 -0.825 0.499 1.075 sum -16.979 15.052 11.847 25.597 Atomic orbital electron populations 1.21800 0.92592 1.03040 1.03351 1.23037 0.95200 0.79863 1.02992 1.86503 1.23842 1.32624 1.84637 1.20926 0.80695 0.89783 0.73704 1.90890 1.59990 1.42102 1.43973 1.19494 0.93207 0.90868 1.09070 1.21377 1.00100 0.91290 0.94965 1.21172 0.95376 0.97068 1.01523 1.21318 0.93373 0.98919 0.95938 1.21396 1.01009 0.90942 1.00869 1.17444 0.87220 0.87623 0.95255 1.45108 1.48093 1.30472 1.07661 1.21842 1.00875 0.98938 0.83956 1.20271 0.80199 0.83551 0.82181 1.90693 1.56201 1.61181 1.30514 1.23259 1.00562 0.97876 1.04832 1.84758 1.63191 1.40621 1.03193 1.22312 1.31633 1.14987 0.97661 0.89370 1.24694 0.93568 0.93747 0.99230 1.69941 1.30526 1.18994 1.32351 0.86747 0.81865 0.79135 0.84196 1.19197 1.19949 1.15957 0.91454 0.90144 0.91613 0.90874 0.91158 0.84224 0.84894 0.84865 0.84642 0.91726 0.89984 0.91426 0.88528 0.88033 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.68 6.20 37.16 0.23 0.91 16 3 O -0.36 -4.57 9.47 -40.64 -0.38 -4.96 16 4 C 0.51 7.67 7.89 34.45 0.27 7.95 16 5 O -0.48 -8.63 12.90 -19.27 -0.25 -8.87 16 6 C -0.12 -1.70 5.89 -104.83 -0.62 -2.32 16 7 C -0.06 -0.60 9.61 -39.19 -0.38 -0.98 16 8 C -0.13 -1.11 10.02 -39.63 -0.40 -1.51 16 9 C -0.08 -0.68 10.03 -39.53 -0.40 -1.07 16 10 C -0.12 -1.42 9.96 -39.43 -0.39 -1.82 16 11 C 0.22 3.11 4.44 -83.48 -0.37 2.74 16 12 N -0.58 -9.24 1.52 -120.60 -0.18 -9.42 16 13 C 0.09 1.05 9.88 59.85 0.59 1.64 16 14 C 0.55 11.12 6.74 -10.98 -0.07 11.04 16 15 O -0.51 -12.17 15.83 5.57 0.09 -12.08 16 16 C -0.11 -2.45 4.71 36.01 0.17 -2.28 16 17 S -0.14 -3.84 18.55 -107.50 -1.99 -5.84 16 18 C -0.52 -15.37 10.04 30.94 0.31 -15.06 16 19 H 0.09 2.72 8.03 -52.49 -0.42 2.29 16 20 C 0.10 2.87 5.50 -17.43 -0.10 2.78 16 21 N -0.88 -27.06 13.97 55.49 0.78 -26.29 16 22 Si 0.86 22.33 27.74 -169.99 -4.71 17.62 16 23 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.24 -6.19 6.74 56.52 0.38 -5.81 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.14 1.17 7.61 -52.49 -0.40 0.77 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.06 0.83 7.18 -51.93 -0.37 0.45 16 36 H 0.08 0.95 6.44 -51.93 -0.33 0.62 16 37 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 38 H 0.10 1.86 7.40 -51.92 -0.38 1.47 16 39 H 0.10 2.12 8.11 -51.91 -0.42 1.70 16 40 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -37.12 358.12 -7.32 -44.44 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.29 Total: -1.29 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.76 Total: 1.29 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.59 Total: -35.71 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.55 Total: -25.91 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.99 Total: -5.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.12 -7.32 -44.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105968655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.497 kcal (2) G-P(sol) polarization free energy of solvation -37.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds