Wall clock time and date at job start Tue Mar 31 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47019 * 2 1 4 4 C 1.34753 * 116.99932 * 179.97438 * 3 2 1 5 5 O 1.21510 * 120.00539 * 0.02562 * 4 3 2 6 6 C 1.47388 * 120.00016 * 180.02562 * 4 3 2 7 7 C 1.39750 * 120.20514 * 0.02562 * 6 4 3 8 8 C 1.37768 * 119.91735 * 180.02562 * 7 6 4 9 9 C 1.38585 * 120.33793 * 0.02562 * 8 7 6 10 10 C 1.38020 * 120.41633 * 359.97438 * 9 8 7 11 11 C 1.38851 * 120.07452 * 0.02562 * 10 9 8 12 12 N 1.39254 * 120.16534 * 180.02562 * 11 10 9 13 13 C 1.46497 * 119.99930 * 89.97446 * 12 11 10 14 14 C 1.34777 * 119.99770 * 269.97630 * 12 11 10 15 15 O 1.21271 * 120.00355 * 359.97438 * 14 12 11 16 16 C 1.50707 * 119.99829 * 180.02562 * 14 12 11 17 17 S 1.80991 * 109.46944 * 179.97438 * 16 14 12 18 18 C 1.76204 * 99.99994 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99874 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00224 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99851 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99890 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47243 * 90.00537 * 22 20 18 24 24 H 1.48500 * 109.47173 * 210.00163 * 22 20 18 25 25 H 1.48504 * 109.47006 * 329.99946 * 22 20 18 26 26 H 1.08998 * 109.47345 * 60.00057 * 1 2 3 27 27 H 1.09003 * 109.46871 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47384 * 299.99659 * 1 2 3 29 29 H 1.08997 * 109.47037 * 240.00009 * 2 1 3 30 30 H 1.08998 * 109.47345 * 119.99943 * 2 1 3 31 31 H 1.07996 * 120.03900 * 359.97438 * 7 6 4 32 32 H 1.08000 * 119.83361 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.79035 * 179.72871 * 9 8 7 34 34 H 1.07997 * 119.95730 * 180.02562 * 10 9 8 35 35 H 1.09006 * 109.46864 * 89.99975 * 13 12 11 36 36 H 1.08997 * 109.47090 * 209.99508 * 13 12 11 37 37 H 1.08998 * 109.47166 * 330.00247 * 13 12 11 38 38 H 1.08997 * 109.46800 * 299.99960 * 16 14 12 39 39 H 1.09003 * 109.47022 * 59.99341 * 16 14 12 40 40 H 0.97004 * 119.99997 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0901 0.5819 0.0005 6 6 3.9132 2.9075 0.0011 7 6 3.0659 4.0188 0.0017 8 6 3.5988 5.2892 0.0017 9 6 4.9726 5.4720 0.0007 10 6 5.8222 4.3843 0.0001 11 6 5.3036 3.0963 0.0001 12 7 6.1591 1.9975 0.0000 13 6 6.6096 1.4199 1.2687 14 6 6.5727 1.4656 -1.1672 15 8 6.1995 1.9435 -2.2174 16 6 7.4982 0.2761 -1.1673 17 16 7.8677 -0.2007 -2.8737 18 6 8.9357 -1.5719 -2.5838 19 1 9.1687 -1.8705 -1.5725 20 6 9.4776 -2.2682 -3.6553 21 7 10.2750 -3.2928 -3.4387 22 14 9.0740 -1.7521 -5.4046 23 1 10.0714 -0.7548 -5.8691 24 1 9.1127 -2.9414 -6.2930 25 1 7.7171 -1.1499 -5.4425 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9946 3.8818 0.0013 32 1 2.9427 6.1471 0.0026 33 1 5.3808 6.4719 -0.0037 34 1 6.8916 4.5353 -0.0003 35 1 5.9104 0.6452 1.5838 36 1 7.6000 0.9840 1.1381 37 1 6.6533 2.2005 2.0282 38 1 8.4237 0.5359 -0.6536 39 1 7.0189 -0.5571 -0.6532 40 1 10.6534 -3.7797 -4.1875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105968655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:29 Heat of formation + Delta-G solvation = -101.575171 kcal Electronic energy + Delta-G solvation = -24932.179746 eV Core-core repulsion = 21224.174548 eV Total energy + Delta-G solvation = -3708.005198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.13380 -40.94701 -39.45018 -37.69397 -36.58046 -34.70781 -33.14776 -32.27704 -31.97742 -30.11612 -27.90685 -27.74550 -25.82146 -24.02142 -23.72187 -22.28587 -20.90193 -19.72255 -19.12218 -18.52815 -17.93905 -17.66980 -17.47203 -17.15742 -17.13058 -16.19836 -15.80996 -15.74039 -15.30797 -15.21505 -14.95525 -14.65413 -14.46671 -14.18639 -13.70169 -13.65356 -13.64049 -13.46750 -13.33161 -13.05036 -13.00392 -12.91814 -12.71752 -12.59485 -12.40530 -11.90868 -11.63553 -11.59144 -11.20140 -11.13125 -10.59630 -10.13097 -9.99277 -9.92992 -9.05508 -8.54697 -6.26539 -0.45369 0.19339 0.91591 1.27946 1.38239 1.43934 1.44779 1.49952 1.55918 1.98230 2.22404 2.61708 2.67030 2.83191 3.55986 3.57460 3.81400 3.94178 4.01827 4.03203 4.04740 4.12844 4.28453 4.31953 4.32194 4.34736 4.42775 4.56501 4.73709 4.78964 4.87608 4.88566 5.07811 5.17010 5.26711 5.34687 5.39830 5.51092 5.67742 5.86863 6.02369 6.07707 6.62558 6.89932 6.99817 8.58004 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.003795 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.155204 B = 7375.717857 C = 8458.876188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 O -0.353 6.353 4 C 0.500 3.500 5 O -0.524 6.524 6 C -0.152 4.152 7 C -0.056 4.056 8 C -0.119 4.119 9 C -0.063 4.063 10 C -0.132 4.132 11 C 0.177 3.823 12 N -0.566 5.566 13 C 0.080 3.920 14 C 0.549 3.451 15 O -0.557 6.557 16 C -0.101 4.101 17 S -0.173 6.173 18 C -0.529 4.529 19 H 0.061 0.939 20 C 0.049 3.951 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.258 1.258 24 H -0.255 1.255 25 H -0.242 1.242 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.141 0.859 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.946 18.694 13.509 29.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 O -0.270 6.270 4 C 0.345 3.655 5 O -0.414 6.414 6 C -0.154 4.154 7 C -0.074 4.074 8 C -0.136 4.136 9 C -0.082 4.082 10 C -0.152 4.152 11 C 0.087 3.913 12 N -0.296 5.296 13 C -0.060 4.060 14 C 0.338 3.662 15 O -0.434 6.434 16 C -0.251 4.251 17 S 0.054 5.946 18 C -0.677 4.677 19 H 0.079 0.921 20 C -0.157 4.157 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.182 1.182 24 H -0.179 1.179 25 H -0.166 1.166 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.193 0.807 33 H 0.189 0.811 34 H 0.159 0.841 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.178 18.882 11.931 29.439 hybrid contribution 0.908 -1.652 0.528 1.958 sum -18.270 17.230 12.459 28.034 Atomic orbital electron populations 1.21805 0.89540 1.04453 1.04028 1.23274 0.97524 0.78991 1.02066 1.86507 1.22734 1.33647 1.84093 1.21428 0.81108 0.90280 0.72643 1.90858 1.60874 1.43459 1.46218 1.19623 0.93480 0.91039 1.11305 1.21678 1.00680 0.91149 0.93930 1.21678 0.95818 0.97380 0.98748 1.21791 0.93379 0.99672 0.93329 1.21577 1.01910 0.90554 1.01120 1.17801 0.87387 0.87903 0.98236 1.44941 1.47136 1.30421 1.07114 1.22056 1.00640 0.99956 0.83397 1.19964 0.80040 0.83102 0.83067 1.90655 1.58015 1.62512 1.32233 1.23202 1.02108 0.98820 1.00986 1.84643 1.62497 1.39377 1.08125 1.22419 1.32347 1.16234 0.96703 0.92051 1.25531 0.93354 0.93706 1.03097 1.70012 1.31387 1.19933 1.33971 0.85883 0.81369 0.79524 0.79689 1.18234 1.17947 1.16604 0.91259 0.88361 0.90355 0.92852 0.91179 0.82459 0.80724 0.81079 0.84146 0.92482 0.89556 0.88036 0.86512 0.88066 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 1.20 6.20 71.98 0.45 1.65 16 3 O -0.35 -9.00 9.47 -56.64 -0.54 -9.54 16 4 C 0.50 15.50 7.89 70.23 0.55 16.05 16 5 O -0.52 -19.62 12.90 19.80 0.26 -19.37 16 6 C -0.15 -4.08 5.89 -20.00 -0.12 -4.19 16 7 C -0.06 -1.00 9.61 22.52 0.22 -0.79 16 8 C -0.12 -1.45 10.02 22.24 0.22 -1.22 16 9 C -0.06 -0.86 10.03 22.30 0.22 -0.63 16 10 C -0.13 -2.79 9.96 22.36 0.22 -2.57 16 11 C 0.18 4.98 4.44 38.62 0.17 5.15 16 12 N -0.57 -18.10 1.52 -653.86 -0.99 -19.09 16 13 C 0.08 1.96 9.88 127.77 1.26 3.22 16 14 C 0.55 22.74 6.74 87.66 0.59 23.34 16 15 O -0.56 -27.11 15.83 -3.00 -0.05 -27.15 16 16 C -0.10 -4.39 4.71 71.24 0.34 -4.06 16 17 S -0.17 -9.43 18.55 -56.49 -1.05 -10.48 16 18 C -0.53 -32.30 10.04 67.95 0.68 -31.62 16 19 H 0.06 3.94 8.03 -2.91 -0.02 3.92 16 20 C 0.05 2.95 5.50 84.86 0.47 3.42 16 21 N -0.92 -57.03 13.97 21.65 0.30 -56.72 16 22 Si 0.91 46.47 27.74 68.60 1.90 48.37 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.24 -12.49 6.74 99.48 0.67 -11.81 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.16 2.18 7.61 -2.91 -0.02 2.15 16 32 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.06 1.50 7.18 -2.38 -0.02 1.48 16 36 H 0.09 1.99 6.44 -2.39 -0.02 1.98 16 37 H 0.10 1.77 8.05 -2.39 -0.02 1.75 16 38 H 0.12 4.56 7.40 -2.40 -0.02 4.54 16 39 H 0.10 4.40 8.11 -2.39 -0.02 4.38 16 40 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -84.04 358.12 6.87 -77.17 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.01 Total: 10.23 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.02 Total: 6.59 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -0.69 Total: -75.82 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.33 Total: -56.06 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.05 Total: -10.48 kcal Total: -84.04 6.87 -77.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105968655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.401 kcal (2) G-P(sol) polarization free energy of solvation -84.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds