Wall clock time and date at job start Tue Mar 31 2020 14:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34845 * 117.00170 * 2 1 4 4 O 1.21563 * 119.99914 * 359.97438 * 3 2 1 5 5 C 1.46917 * 119.99941 * 179.97438 * 3 2 1 6 6 C 1.36759 * 125.15935 * 179.97438 * 5 3 2 7 7 C 1.36675 * 114.75100 * 180.02562 * 6 5 3 8 8 C 1.36799 * 114.73533 * 0.02562 * 7 6 5 9 9 C 1.46988 * 125.16555 * 180.02562 * 8 7 6 10 10 O 1.21685 * 119.99529 * 6.95441 * 9 8 7 11 11 N 1.34777 * 120.00331 * 186.95145 * 9 8 7 12 12 C 1.36672 * 120.00310 * 185.15789 * 11 9 8 13 13 H 1.08002 * 120.00290 * 135.66721 * 12 11 9 14 14 C 1.39167 * 119.99948 * 315.66973 * 12 11 9 15 15 N 1.31296 * 119.99913 * 339.51412 * 14 12 11 16 16 Si 1.86802 * 119.99991 * 159.51442 * 14 12 11 17 17 H 1.48500 * 109.47051 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47153 * 119.99850 * 16 14 12 19 19 H 1.48500 * 109.47053 * 239.99563 * 16 14 12 20 20 C 1.46502 * 119.99755 * 5.16049 * 11 9 8 21 21 C 1.54264 * 110.03138 * 182.97397 * 20 11 9 22 22 C 1.54966 * 104.15905 * 217.13777 * 21 20 11 23 23 C 1.54891 * 102.77977 * 37.88488 * 22 21 20 24 24 C 1.53880 * 110.03262 * 65.75491 * 20 11 9 25 25 S 1.75835 * 125.15942 * 0.02605 * 5 3 2 26 26 H 1.08998 * 109.47354 * 300.00127 * 1 2 3 27 27 H 1.08999 * 109.47267 * 60.00163 * 1 2 3 28 28 H 1.08997 * 109.47384 * 180.02562 * 1 2 3 29 29 H 1.08004 * 122.62292 * 0.29394 * 6 5 3 30 30 H 1.07996 * 122.63875 * 180.02562 * 7 6 5 31 31 H 0.97006 * 119.99927 * 185.04424 * 15 14 12 32 32 H 1.09002 * 110.01778 * 304.36724 * 20 11 9 33 33 H 1.08997 * 110.48594 * 335.77871 * 21 20 11 34 34 H 1.08996 * 110.48742 * 98.42696 * 21 20 11 35 35 H 1.09007 * 110.71565 * 279.57708 * 22 21 20 36 36 H 1.08997 * 110.92473 * 156.29313 * 22 21 20 37 37 H 1.08994 * 110.48717 * 203.40899 * 23 22 21 38 38 H 1.08998 * 110.59464 * 80.81861 * 23 22 21 39 39 H 1.09004 * 110.02960 * 238.56996 * 24 20 11 40 40 H 1.08999 * 110.03165 * 359.95120 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2015 0.0000 4 8 1.4021 2.2210 -0.0005 5 6 3.5313 1.2783 0.0006 6 6 4.2593 2.4360 0.0001 7 6 5.6147 2.2597 0.0003 8 6 6.0220 0.9538 0.0003 9 6 7.4212 0.5035 0.0009 10 8 8.3208 1.3129 0.1291 11 7 7.7079 -0.8059 -0.1404 12 6 9.0002 -1.2378 -0.0345 13 1 9.2281 -2.1242 0.5390 14 6 10.0226 -0.5355 -0.6655 15 7 9.7458 0.2717 -1.6634 16 14 11.7887 -0.7413 -0.0929 17 1 11.8332 -1.7002 1.0401 18 1 12.6151 -1.2589 -1.2129 19 1 12.3218 0.5722 0.3496 20 6 6.6342 -1.7660 -0.4077 21 6 7.2053 -3.1983 -0.4529 22 6 6.3945 -3.8945 -1.5752 23 6 6.2333 -2.7707 -2.6289 24 6 6.0160 -1.4942 -1.7904 25 16 4.6177 -0.1043 0.0006 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.7992 3.4132 0.0040 30 1 6.3096 3.0864 0.0004 31 1 10.4642 0.7047 -2.1505 32 1 5.8682 -1.6937 0.3645 33 1 8.2656 -3.1784 -0.7049 34 1 7.0482 -3.7020 0.5008 35 1 5.4221 -4.2184 -1.2041 36 1 6.9481 -4.7366 -1.9903 37 1 5.3673 -2.9630 -3.2622 38 1 7.1351 -2.6805 -3.2343 39 1 4.9499 -1.2908 -1.6892 40 1 6.5143 -0.6473 -2.2621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128254993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:10 Heat of formation + Delta-G solvation = -64.450365 kcal Electronic energy + Delta-G solvation = -25793.530324 eV Core-core repulsion = 22087.134979 eV Total energy + Delta-G solvation = -3706.395346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.18409 -39.23232 -37.46679 -36.53249 -35.90966 -33.53173 -31.91591 -29.99577 -28.52503 -27.67513 -27.09061 -25.72788 -24.15861 -21.78731 -21.09087 -20.15733 -19.72730 -18.64407 -18.02231 -17.05123 -16.54748 -16.32288 -16.17572 -15.51670 -15.14135 -14.72550 -14.27582 -14.02900 -13.71695 -13.68672 -13.28691 -13.04140 -12.92034 -12.43362 -12.26661 -12.14010 -11.70054 -11.58215 -11.33800 -11.14010 -10.95085 -10.84813 -10.82464 -10.70354 -10.65039 -10.56742 -10.34365 -10.28897 -10.13795 -9.70512 -8.96330 -8.38680 -8.33149 -7.91558 -7.31737 -6.31678 -4.00657 0.49422 1.83664 2.24066 2.37431 2.72717 3.18170 3.22013 3.30814 3.33588 4.07394 4.47190 4.65222 4.97891 4.99947 5.00769 5.05083 5.07682 5.17227 5.38517 5.41194 5.60058 5.63505 5.73442 5.85324 5.95613 5.98180 6.09827 6.12224 6.21915 6.31540 6.34755 6.39999 6.49514 6.59643 6.69798 6.70923 6.86159 7.00596 7.42451 7.78364 8.05708 8.78676 8.93081 9.39469 10.03512 10.75061 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.004668 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.793769 B = 5996.903160 C = 7171.339065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.357 6.357 3 C 0.544 3.456 4 O -0.513 6.513 5 C -0.316 4.316 6 C -0.042 4.042 7 C -0.129 4.129 8 C -0.164 4.164 9 C 0.518 3.482 10 O -0.518 6.518 11 N -0.427 5.427 12 C -0.340 4.340 13 H 0.090 0.910 14 C 0.073 3.927 15 N -0.809 5.809 16 Si 0.913 3.087 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.279 1.279 20 C 0.117 3.883 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.150 4.150 25 S 0.242 5.758 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.310 -5.865 0.416 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.274 6.274 3 C 0.390 3.610 4 O -0.403 6.403 5 C -0.434 4.434 6 C -0.076 4.076 7 C -0.160 4.160 8 C -0.287 4.287 9 C 0.305 3.695 10 O -0.397 6.397 11 N -0.148 5.148 12 C -0.467 4.467 13 H 0.108 0.892 14 C -0.140 4.140 15 N -0.440 5.440 16 Si 0.740 3.260 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.204 1.204 20 C 0.011 3.989 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.151 4.151 24 C -0.189 4.189 25 S 0.513 5.487 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.161 0.839 30 H 0.170 0.830 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.253 -6.559 0.403 13.904 hybrid contribution 0.593 1.711 0.104 1.814 sum -11.660 -4.847 0.506 12.638 Atomic orbital electron populations 1.23238 0.76190 1.03593 1.02501 1.86590 1.23368 1.32629 1.84816 1.19923 0.87426 0.81322 0.72365 1.90821 1.66341 1.35969 1.47201 1.24154 0.93986 1.01887 1.23353 1.20361 0.92617 0.97906 0.96724 1.20335 0.94670 0.96555 1.04393 1.26025 0.98623 0.97434 1.06665 1.16767 0.84446 0.83992 0.84282 1.90681 1.45308 1.52075 1.51593 1.43324 1.06041 1.03933 1.61454 1.19028 0.80689 1.14220 1.32803 0.89223 1.25348 0.99878 0.95124 0.93682 1.69799 1.33636 1.24992 1.15613 0.86130 0.82679 0.78424 0.78801 1.19263 1.20996 1.20428 1.21932 0.90211 0.92138 0.94623 1.22675 1.03017 0.92155 0.97826 1.22490 0.99531 0.97564 0.96532 1.22241 1.01178 0.94310 0.97368 1.23116 1.00217 0.99648 0.95968 1.84913 0.93291 1.04729 1.65776 0.91954 0.91917 0.88047 0.83903 0.83018 0.92130 0.92340 0.87494 0.92243 0.92187 0.91815 0.92447 0.91331 0.90973 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.36 -4.94 10.41 -40.89 -0.43 -5.37 16 3 C 0.54 8.82 7.94 34.24 0.27 9.09 16 4 O -0.51 -9.10 16.61 -19.31 -0.32 -9.42 16 5 C -0.32 -5.32 6.46 -36.60 -0.24 -5.55 16 6 C -0.04 -0.71 9.88 -40.68 -0.40 -1.11 16 7 C -0.13 -2.43 9.89 -40.67 -0.40 -2.84 16 8 C -0.16 -3.38 5.87 -36.56 -0.21 -3.59 16 9 C 0.52 12.90 6.55 -12.72 -0.08 12.82 16 10 O -0.52 -14.92 14.40 5.20 0.07 -14.85 16 11 N -0.43 -10.04 2.56 -107.91 -0.28 -10.31 16 12 C -0.34 -8.53 7.37 -15.05 -0.11 -8.64 16 13 H 0.09 2.12 6.92 -52.49 -0.36 1.76 16 14 C 0.07 1.91 4.31 -17.44 -0.08 1.84 16 15 N -0.81 -22.46 11.74 55.51 0.65 -21.81 16 16 Si 0.91 20.48 29.60 -169.99 -5.03 15.44 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 C 0.12 2.20 2.78 -66.81 -0.19 2.01 16 21 C -0.12 -1.98 5.76 -25.03 -0.14 -2.12 16 22 C -0.12 -1.69 6.91 -24.70 -0.17 -1.86 16 23 C -0.11 -1.71 6.83 -25.07 -0.17 -1.88 16 24 C -0.15 -2.63 4.81 -25.61 -0.12 -2.76 16 25 S 0.24 4.04 14.96 -107.50 -1.61 2.44 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.14 2.14 8.04 -52.48 -0.42 1.72 16 30 H 0.15 2.84 8.05 -52.49 -0.42 2.42 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.06 1.04 5.24 -27.13 -0.14 0.90 16 33 H 0.11 2.02 5.80 -51.93 -0.30 1.72 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.14 5.39 -29.07 -0.16 0.98 16 40 H 0.08 1.70 7.48 -51.93 -0.39 1.31 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -31.36 337.88 -7.54 -38.90 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.71 Total: 3.03 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.98 Total: -3.14 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.38 Total: -32.12 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.67 Total: -29.63 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.44 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.61 Total: 2.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.36 -7.54 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128254993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.550 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds