Wall clock time and date at job start Tue Mar 31 2020 14:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34845 * 117.00170 * 2 1 4 4 O 1.21563 * 119.99914 * 359.97438 * 3 2 1 5 5 C 1.46917 * 119.99941 * 179.97438 * 3 2 1 6 6 C 1.36759 * 125.15935 * 179.97438 * 5 3 2 7 7 C 1.36675 * 114.75100 * 180.02562 * 6 5 3 8 8 C 1.36799 * 114.73533 * 0.02562 * 7 6 5 9 9 C 1.46988 * 125.16555 * 180.02562 * 8 7 6 10 10 O 1.21685 * 119.99529 * 6.95441 * 9 8 7 11 11 N 1.34777 * 120.00331 * 186.95145 * 9 8 7 12 12 C 1.36672 * 120.00310 * 185.15789 * 11 9 8 13 13 H 1.08002 * 120.00290 * 135.66721 * 12 11 9 14 14 C 1.39167 * 119.99948 * 315.66973 * 12 11 9 15 15 N 1.31296 * 119.99913 * 339.51412 * 14 12 11 16 16 Si 1.86802 * 119.99991 * 159.51442 * 14 12 11 17 17 H 1.48500 * 109.47051 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47153 * 119.99850 * 16 14 12 19 19 H 1.48500 * 109.47053 * 239.99563 * 16 14 12 20 20 C 1.46502 * 119.99755 * 5.16049 * 11 9 8 21 21 C 1.54264 * 110.03138 * 182.97397 * 20 11 9 22 22 C 1.54966 * 104.15905 * 217.13777 * 21 20 11 23 23 C 1.54891 * 102.77977 * 37.88488 * 22 21 20 24 24 C 1.53880 * 110.03262 * 65.75491 * 20 11 9 25 25 S 1.75835 * 125.15942 * 0.02605 * 5 3 2 26 26 H 1.08998 * 109.47354 * 300.00127 * 1 2 3 27 27 H 1.08999 * 109.47267 * 60.00163 * 1 2 3 28 28 H 1.08997 * 109.47384 * 180.02562 * 1 2 3 29 29 H 1.08004 * 122.62292 * 0.29394 * 6 5 3 30 30 H 1.07996 * 122.63875 * 180.02562 * 7 6 5 31 31 H 0.97006 * 119.99927 * 185.04424 * 15 14 12 32 32 H 1.09002 * 110.01778 * 304.36724 * 20 11 9 33 33 H 1.08997 * 110.48594 * 335.77871 * 21 20 11 34 34 H 1.08996 * 110.48742 * 98.42696 * 21 20 11 35 35 H 1.09007 * 110.71565 * 279.57708 * 22 21 20 36 36 H 1.08997 * 110.92473 * 156.29313 * 22 21 20 37 37 H 1.08994 * 110.48717 * 203.40899 * 23 22 21 38 38 H 1.08998 * 110.59464 * 80.81861 * 23 22 21 39 39 H 1.09004 * 110.02960 * 238.56996 * 24 20 11 40 40 H 1.08999 * 110.03165 * 359.95120 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2015 0.0000 4 8 1.4021 2.2210 -0.0005 5 6 3.5313 1.2783 0.0006 6 6 4.2593 2.4360 0.0001 7 6 5.6147 2.2597 0.0003 8 6 6.0220 0.9538 0.0003 9 6 7.4212 0.5035 0.0009 10 8 8.3208 1.3129 0.1291 11 7 7.7079 -0.8059 -0.1404 12 6 9.0002 -1.2378 -0.0345 13 1 9.2281 -2.1242 0.5390 14 6 10.0226 -0.5355 -0.6655 15 7 9.7458 0.2717 -1.6634 16 14 11.7887 -0.7413 -0.0929 17 1 11.8332 -1.7002 1.0401 18 1 12.6151 -1.2589 -1.2129 19 1 12.3218 0.5722 0.3496 20 6 6.6342 -1.7660 -0.4077 21 6 7.2053 -3.1983 -0.4529 22 6 6.3945 -3.8945 -1.5752 23 6 6.2333 -2.7707 -2.6289 24 6 6.0160 -1.4942 -1.7904 25 16 4.6177 -0.1043 0.0006 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.7992 3.4132 0.0040 30 1 6.3096 3.0864 0.0004 31 1 10.4642 0.7047 -2.1505 32 1 5.8682 -1.6937 0.3645 33 1 8.2656 -3.1784 -0.7049 34 1 7.0482 -3.7020 0.5008 35 1 5.4221 -4.2184 -1.2041 36 1 6.9481 -4.7366 -1.9903 37 1 5.3673 -2.9630 -3.2622 38 1 7.1351 -2.6805 -3.2343 39 1 4.9499 -1.2908 -1.6892 40 1 6.5143 -0.6473 -2.2621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128254993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:10 Heat of formation + Delta-G solvation = -83.019728 kcal Electronic energy + Delta-G solvation = -25794.335552 eV Core-core repulsion = 22087.134979 eV Total energy + Delta-G solvation = -3707.200574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39833 -40.89895 -38.91410 -37.97517 -37.26951 -35.32492 -33.71665 -31.46905 -29.84886 -28.77572 -28.54247 -27.24390 -25.75323 -23.14720 -22.62695 -21.52951 -21.17741 -19.95118 -19.62732 -18.47963 -18.16169 -17.59104 -17.43764 -17.08628 -16.56737 -16.35792 -15.84083 -15.54188 -15.28194 -15.08747 -14.54769 -14.37975 -14.27926 -14.03206 -13.65061 -13.29855 -13.26142 -13.00872 -12.92803 -12.88961 -12.66658 -12.32378 -12.06285 -12.03979 -11.93745 -11.84653 -11.76552 -11.71918 -11.51325 -11.07942 -10.86643 -10.29586 -9.87383 -9.30322 -9.19338 -8.25218 -5.98309 -0.95476 0.36677 0.78928 0.95846 1.39064 1.47264 1.54544 1.61073 1.81498 2.26341 2.64995 2.95272 3.18213 3.69594 3.77915 3.82934 3.96854 4.13524 4.21153 4.31790 4.34643 4.35944 4.47721 4.62758 4.66157 4.71498 4.74071 4.89431 4.95756 5.02103 5.06855 5.17199 5.20926 5.24512 5.30477 5.41858 5.44552 5.51127 5.69692 6.16309 6.55921 6.90857 7.08493 7.53197 8.17870 8.82846 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.004668 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.793769 B = 5996.903160 C = 7171.339065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.548 3.452 4 O -0.527 6.527 5 C -0.308 4.308 6 C -0.046 4.046 7 C -0.118 4.118 8 C -0.214 4.214 9 C 0.509 3.491 10 O -0.574 6.574 11 N -0.439 5.439 12 C -0.352 4.352 13 H 0.099 0.901 14 C 0.026 3.974 15 N -0.855 5.855 16 Si 0.969 3.031 17 H -0.251 1.251 18 H -0.273 1.273 19 H -0.299 1.299 20 C 0.108 3.892 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.112 4.112 24 C -0.145 4.145 25 S 0.312 5.688 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.164 0.836 30 H 0.143 0.857 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.093 0.907 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 -8.266 0.852 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.394 3.606 4 O -0.419 6.419 5 C -0.427 4.427 6 C -0.080 4.080 7 C -0.150 4.150 8 C -0.336 4.336 9 C 0.297 3.703 10 O -0.457 6.457 11 N -0.158 5.158 12 C -0.480 4.480 13 H 0.117 0.883 14 C -0.183 4.183 15 N -0.488 5.488 16 Si 0.793 3.207 17 H -0.174 1.174 18 H -0.198 1.198 19 H -0.226 1.226 20 C 0.003 3.997 21 C -0.158 4.158 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.185 4.185 25 S 0.584 5.416 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.181 0.819 30 H 0.161 0.839 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.537 -9.050 0.840 18.000 hybrid contribution 1.290 2.469 0.008 2.786 sum -14.248 -6.580 0.848 15.717 Atomic orbital electron populations 1.23667 0.73534 1.06236 1.02929 1.86569 1.25867 1.30909 1.84046 1.19739 0.86899 0.81921 0.72067 1.90824 1.66538 1.36758 1.47793 1.24494 0.95018 1.02089 1.21065 1.20416 0.91459 0.99131 0.96962 1.20420 0.95675 0.95919 1.03017 1.25646 0.98419 0.99253 1.10322 1.17356 0.85774 0.84121 0.83030 1.90617 1.47663 1.53600 1.53863 1.43505 1.06765 1.04406 1.61156 1.19306 0.81787 1.14252 1.32650 0.88326 1.26134 1.03450 0.95019 0.93669 1.69922 1.34072 1.27363 1.17479 0.85278 0.78778 0.77502 0.79100 1.17444 1.19820 1.22586 1.22271 0.89479 0.92385 0.95600 1.22673 1.01743 0.91235 1.00179 1.22479 1.00742 0.97004 0.94540 1.22258 1.01473 0.93576 0.97674 1.23051 1.00531 0.99453 0.95432 1.84378 0.90249 1.02965 1.63969 0.91550 0.91557 0.84362 0.81872 0.83932 0.92915 0.90852 0.90341 0.90230 0.89088 0.90138 0.89342 0.93672 0.88932 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.36 -8.46 10.41 -57.58 -0.60 -9.06 16 3 C 0.55 16.04 7.94 70.09 0.56 16.60 16 4 O -0.53 -17.21 16.61 19.63 0.33 -16.89 16 5 C -0.31 -9.63 6.46 24.20 0.16 -9.48 16 6 C -0.05 -1.49 9.88 21.56 0.21 -1.28 16 7 C -0.12 -4.53 9.89 21.57 0.21 -4.32 16 8 C -0.21 -8.95 5.87 24.23 0.14 -8.80 16 9 C 0.51 26.53 6.55 86.54 0.57 27.09 16 10 O -0.57 -35.27 14.40 -4.30 -0.06 -35.33 16 11 N -0.44 -21.28 2.56 -613.55 -1.57 -22.84 16 12 C -0.35 -18.29 7.37 84.16 0.62 -17.67 16 13 H 0.10 4.77 6.92 -2.91 -0.02 4.75 16 14 C 0.03 1.41 4.31 85.00 0.37 1.78 16 15 N -0.85 -50.54 11.74 21.70 0.25 -50.28 16 16 Si 0.97 43.76 29.60 68.60 2.03 45.79 16 17 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 20 C 0.11 3.97 2.78 45.72 0.13 4.09 16 21 C -0.12 -3.80 5.76 31.70 0.18 -3.61 16 22 C -0.11 -2.63 6.91 31.91 0.22 -2.41 16 23 C -0.11 -3.16 6.83 31.67 0.22 -2.94 16 24 C -0.15 -4.98 4.81 31.32 0.15 -4.83 16 25 S 0.31 9.79 14.96 -56.49 -0.84 8.94 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.16 4.59 8.04 -2.91 -0.02 4.57 16 30 H 0.14 5.63 8.05 -2.91 -0.02 5.60 16 31 H 0.26 14.92 8.31 -92.70 -0.77 14.14 16 32 H 0.07 2.44 5.24 -18.15 -0.10 2.35 16 33 H 0.08 2.96 5.80 -2.39 -0.01 2.95 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.66 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 2.69 5.39 -16.92 -0.09 2.60 16 40 H 0.04 1.61 7.48 -2.39 -0.02 1.59 16 Total: -1.00 -73.10 337.88 5.38 -67.72 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.91 Total: 16.08 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.93 Total: -4.14 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.31 Total: -73.12 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -0.34 Total: -61.28 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 9.79 SS G_CDS: -0.84 Total: 8.94 kcal Total: -73.10 5.38 -67.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128254993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.295 kcal (2) G-P(sol) polarization free energy of solvation -73.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds