Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00201 * 2 1 4 4 O 1.20828 * 119.99481 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00251 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47123 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47123 * 179.97438 * 6 5 3 8 8 C 1.38287 * 119.92657 * 270.31444 * 7 6 5 9 9 C 1.38118 * 120.06716 * 180.27633 * 8 7 6 10 10 C 1.38874 * 119.92887 * 359.42718 * 9 8 7 11 11 N 1.39923 * 120.06578 * 180.29339 * 10 9 8 12 12 C 1.34784 * 119.99354 * 144.91266 * 11 10 9 13 13 O 1.21283 * 119.99989 * 4.62666 * 12 11 10 14 14 C 1.50703 * 119.99893 * 184.62204 * 12 11 10 15 15 S 1.80993 * 109.47119 * 180.02562 * 14 12 11 16 16 C 1.76202 * 99.99770 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00275 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99476 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00503 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99401 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47060 * 90.00254 * 20 18 16 22 22 H 1.48504 * 109.47134 * 209.99733 * 20 18 16 23 23 H 1.48496 * 109.47449 * 329.99969 * 20 18 16 24 24 C 1.38872 * 119.85875 * 0.28010 * 10 9 8 25 25 C 1.38106 * 119.92759 * 359.97438 * 24 10 9 26 26 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47323 * 300.00045 * 1 2 3 28 28 H 1.08998 * 109.47256 * 59.99907 * 1 2 3 29 29 H 1.08998 * 109.47167 * 59.99713 * 5 3 2 30 30 H 1.09005 * 109.47127 * 299.99595 * 5 3 2 31 31 H 1.08998 * 109.47527 * 59.99697 * 6 5 3 32 32 H 1.09010 * 109.47029 * 299.99851 * 6 5 3 33 33 H 1.08000 * 119.96888 * 0.02562 * 8 7 6 34 34 H 1.08003 * 120.03200 * 179.69943 * 9 8 7 35 35 H 0.96992 * 120.00802 * 324.91917 * 11 10 9 36 36 H 1.09001 * 109.47127 * 300.00552 * 14 12 11 37 37 H 1.09001 * 109.47129 * 59.99993 * 14 12 11 38 38 H 0.96999 * 120.00160 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.02986 * 180.02562 * 24 10 9 40 40 H 1.08008 * 119.95999 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5050 2.8210 0.0002 8 6 6.1943 2.8499 1.1987 9 6 7.5732 2.9279 1.2022 10 6 8.2681 2.9653 0.0004 11 7 9.6655 3.0382 0.0006 12 6 10.3733 2.4041 -0.9552 13 8 9.7984 1.8409 -1.8625 14 6 11.8792 2.3951 -0.8965 15 16 12.5325 1.4711 -2.3090 16 6 14.2606 1.6164 -1.9968 17 1 14.6091 2.1598 -1.1310 18 6 15.1739 1.0335 -2.8644 19 7 14.7492 0.3717 -3.9199 20 14 17.0059 1.1882 -2.5338 21 1 17.4549 0.0500 -1.6922 22 1 17.7445 1.1727 -3.8221 23 1 17.2749 2.4647 -1.8243 24 6 7.5732 2.9300 -1.2014 25 6 6.1941 2.8573 -1.1981 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 3.6107 3.2357 0.8906 32 1 3.6100 3.2368 -0.8894 33 1 5.6536 2.8155 2.1330 34 1 8.1107 2.9554 2.1386 35 1 10.1247 3.5448 0.6885 36 1 12.2503 3.4195 -0.9298 37 1 12.2039 1.9211 0.0298 38 1 15.3875 -0.0354 -4.5264 39 1 8.1109 2.9585 -2.1377 40 1 5.6531 2.8294 -2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171549496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = -104.919229 kcal Electronic energy + Delta-G solvation = -22889.410857 eV Core-core repulsion = 19181.260649 eV Total energy + Delta-G solvation = -3708.150207 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84731 -40.33621 -38.58847 -36.94992 -35.22946 -33.34942 -32.47790 -30.98835 -30.33677 -28.84658 -27.60091 -25.55833 -24.68032 -23.03438 -21.78766 -20.83735 -20.26755 -18.14999 -18.02556 -17.45030 -17.02275 -16.91028 -16.53521 -15.56633 -15.43989 -14.84846 -14.82493 -14.46587 -14.22382 -14.03105 -13.75905 -13.46313 -13.41282 -13.20568 -13.04201 -12.68187 -12.56775 -12.31054 -11.94294 -11.68706 -11.56471 -11.20235 -11.11077 -11.08628 -11.05630 -10.84967 -10.80752 -10.15153 -9.88280 -9.50146 -9.11168 -8.94163 -8.32080 -8.03864 -6.56850 -6.26584 -3.98119 1.17999 1.37812 1.85121 2.37466 2.85256 2.91811 3.19578 3.24435 3.28186 3.58156 3.74406 4.15232 4.32111 4.59253 4.67211 4.71177 4.78040 4.84793 4.86771 4.98621 5.00270 5.08943 5.14199 5.21089 5.31783 5.34750 5.47918 5.63783 5.72157 5.76872 5.78033 5.99258 6.01882 6.03509 6.24386 6.36311 6.52239 6.57257 7.04627 7.37783 7.47844 7.55146 8.30238 8.37389 9.18890 10.80818 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.001839 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.169284 B =15224.315894 C =15778.506842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.461 3.539 4 O -0.510 6.510 5 C -0.110 4.110 6 C -0.062 4.062 7 C -0.112 4.112 8 C -0.096 4.096 9 C -0.149 4.149 10 C 0.157 3.843 11 N -0.682 5.682 12 C 0.532 3.468 13 O -0.496 6.496 14 C -0.154 4.154 15 S -0.057 6.057 16 C -0.537 4.537 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.920 3.080 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.120 4.120 25 C -0.094 4.094 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.409 0.591 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.269 0.731 39 H 0.143 0.857 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.351 3.827 11.848 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.304 3.696 4 O -0.397 6.397 5 C -0.148 4.148 6 C -0.100 4.100 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.169 4.169 10 C 0.062 3.938 11 N -0.328 5.328 12 C 0.319 3.681 13 O -0.368 6.368 14 C -0.305 4.305 15 S 0.170 5.830 16 C -0.686 4.686 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.140 4.140 25 C -0.112 4.112 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.245 0.755 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.161 0.839 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.404 3.051 10.149 26.606 hybrid contribution 1.937 0.959 1.646 2.716 sum -22.468 4.009 11.794 25.690 Atomic orbital electron populations 1.23272 0.76318 1.03755 1.02549 1.86532 1.23504 1.33646 1.84068 1.23962 0.92384 0.81234 0.71990 1.90676 1.67368 1.36344 1.45336 1.21477 0.86740 0.99996 1.06587 1.20320 0.91420 0.93781 1.04443 1.19651 0.94628 1.03625 0.93398 1.20755 0.93304 0.99992 0.97424 1.20884 0.94536 1.04973 0.96516 1.17859 0.82883 0.99100 0.94001 1.43689 1.04349 1.52894 1.31899 1.20538 0.89676 0.76987 0.80867 1.90699 1.71325 1.42099 1.32722 1.23549 0.92516 1.06420 1.07992 1.85412 1.03672 1.67615 1.26307 1.22859 0.90951 1.40721 1.14033 0.90828 1.24996 0.99694 0.94431 0.94403 1.70007 1.35129 1.32518 1.12547 0.86154 0.82695 0.78674 0.77898 1.20235 1.20713 1.19672 1.21398 0.93958 1.00266 0.98350 1.20956 0.93653 0.99118 0.97500 0.88058 0.91905 0.91859 0.87164 0.87337 0.90204 0.90094 0.85897 0.85761 0.75494 0.88814 0.88799 0.92106 0.83930 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.08 10.57 -39.27 -0.41 -3.49 16 3 C 0.46 4.20 7.96 36.00 0.29 4.49 16 4 O -0.51 -5.93 15.73 -18.75 -0.29 -6.22 16 5 C -0.11 -0.80 5.79 -27.89 -0.16 -0.96 16 6 C -0.06 -0.50 4.63 -27.89 -0.13 -0.63 16 7 C -0.11 -1.09 5.14 -104.59 -0.54 -1.63 16 8 C -0.10 -0.90 9.69 -39.61 -0.38 -1.28 16 9 C -0.15 -1.56 9.97 -39.39 -0.39 -1.95 16 10 C 0.16 2.06 6.30 -83.69 -0.53 1.53 16 11 N -0.68 -9.09 5.34 -9.86 -0.05 -9.14 16 12 C 0.53 9.49 7.69 -10.98 -0.08 9.40 16 13 O -0.50 -10.62 13.30 5.55 0.07 -10.54 16 14 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 15 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 16 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 20 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.12 -1.67 8.70 -39.40 -0.34 -2.02 16 25 C -0.09 -1.06 9.69 -39.61 -0.38 -1.45 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 32 H 0.08 0.68 8.04 -51.92 -0.42 0.26 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.41 4.01 8.82 -40.82 -0.36 3.65 16 36 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.14 2.31 6.22 -52.48 -0.33 1.99 16 40 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -35.14 365.26 -8.15 -43.28 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.29 Total: 1.93 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.17 Total: -8.66 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.68 Total: -34.13 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.64 Total: -20.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.14 -8.15 -43.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171549496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.635 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds