Wall clock time and date at job start Tue Mar 31 2020 14:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99961 * 2 1 4 4 O 1.20828 * 119.99751 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00306 * 179.97438 * 3 2 1 6 6 S 1.81399 * 109.47312 * 179.97438 * 5 3 2 7 7 C 1.81398 * 102.99972 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47014 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47064 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99901 * 354.83564 * 9 8 7 11 11 N 1.34779 * 119.99924 * 174.84084 * 9 8 7 12 12 C 1.37137 * 120.00011 * 5.67638 * 11 9 8 13 13 H 1.08004 * 120.00273 * 55.66781 * 12 11 9 14 14 C 1.38888 * 120.00163 * 235.66946 * 12 11 9 15 15 N 1.31424 * 119.99674 * 9.24133 * 14 12 11 16 16 Si 1.86798 * 120.00391 * 189.24837 * 14 12 11 17 17 H 1.48493 * 109.47482 * 89.99650 * 16 14 12 18 18 H 1.48501 * 109.46927 * 210.00055 * 16 14 12 19 19 H 1.48497 * 109.46843 * 329.99479 * 16 14 12 20 20 C 1.39785 * 119.99708 * 185.67650 * 11 9 8 21 21 C 1.38961 * 120.07695 * 175.18919 * 20 11 9 22 22 C 1.38081 * 119.92115 * 179.97438 * 21 20 11 23 23 C 1.38303 * 120.08186 * 359.97438 * 22 21 20 24 24 C 1.38314 * 120.15389 * 359.97438 * 23 22 21 25 25 C 1.38088 * 120.07763 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47723 * 300.00541 * 1 2 3 28 28 H 1.08995 * 109.47026 * 60.00865 * 1 2 3 29 29 H 1.09002 * 109.46811 * 59.99610 * 5 3 2 30 30 H 1.09000 * 109.46835 * 299.99574 * 5 3 2 31 31 H 1.08998 * 109.47310 * 60.00068 * 7 6 5 32 32 H 1.08998 * 109.47307 * 300.00024 * 7 6 5 33 33 H 1.09000 * 109.47496 * 60.00008 * 8 7 6 34 34 H 1.09001 * 109.47637 * 300.00049 * 8 7 6 35 35 H 0.97001 * 120.00283 * 184.98362 * 15 14 12 36 36 H 1.07998 * 120.03859 * 359.70541 * 21 20 11 37 37 H 1.08007 * 119.95632 * 179.97438 * 22 21 20 38 38 H 1.07995 * 119.92309 * 179.97438 * 23 22 21 39 39 H 1.07995 * 119.95926 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.03890 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 16 4.0806 3.0145 -0.0003 7 6 5.8912 2.9047 0.0013 8 6 6.4876 4.3137 0.0001 9 6 7.9919 4.2225 0.0008 10 8 8.5338 3.1418 0.0967 11 7 8.7349 5.3420 -0.1050 12 6 8.1275 6.5715 -0.0961 13 1 7.4853 6.8506 0.7261 14 6 8.3383 7.4578 -1.1445 15 7 8.9673 7.0576 -2.2268 16 14 7.7280 9.2186 -1.0160 17 1 8.7874 10.0670 -0.4136 18 1 7.3969 9.7278 -2.3711 19 1 6.5144 9.2607 -0.1613 20 6 10.1246 5.2497 -0.2239 21 6 10.8832 6.3950 -0.4333 22 6 12.2559 6.3002 -0.5497 23 6 12.8759 5.0674 -0.4576 24 6 12.1241 3.9255 -0.2481 25 6 10.7510 4.0128 -0.1308 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.9564 0.7806 -0.8891 30 1 3.9556 0.7811 0.8909 31 1 6.2236 2.3692 -0.8880 32 1 6.2221 2.3705 0.8919 33 1 6.1553 4.8497 0.8891 34 1 6.1568 4.8476 -0.8908 35 1 9.1785 7.6936 -2.9282 36 1 10.3994 7.3575 -0.5093 37 1 12.8460 7.1900 -0.7129 38 1 13.9496 4.9962 -0.5494 39 1 12.6116 2.9645 -0.1763 40 1 10.1645 3.1207 0.0324 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171858384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:35 Heat of formation + Delta-G solvation = -85.233700 kcal Electronic energy + Delta-G solvation = -24053.075373 eV Core-core repulsion = 20345.778794 eV Total energy + Delta-G solvation = -3707.296579 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52909 -41.49061 -39.01817 -37.64123 -36.84572 -33.95246 -33.79580 -31.86663 -31.33091 -30.44641 -28.20321 -27.13741 -25.77276 -23.30960 -22.77617 -22.33238 -21.11064 -19.47438 -18.81460 -18.26678 -17.76416 -17.75699 -17.41889 -16.90319 -16.68976 -16.57283 -16.16586 -15.39667 -15.29501 -14.81926 -14.78109 -14.68465 -14.59047 -14.10301 -13.76176 -13.65644 -13.45169 -13.23677 -13.09894 -12.98129 -12.91981 -12.81230 -12.47497 -12.29897 -12.10216 -11.87340 -11.76699 -11.72071 -11.03628 -10.99829 -10.55323 -9.94149 -9.52127 -8.77310 -8.71265 -8.13703 -6.45361 0.20346 0.69125 0.82898 1.01091 1.41710 1.42392 1.45989 1.56120 1.74589 1.97594 2.25355 2.82780 2.93784 3.36826 3.68162 3.88511 3.96059 4.00742 4.11102 4.21564 4.29731 4.31889 4.33555 4.40026 4.59889 4.64030 4.69765 4.82034 4.93778 4.98437 5.04085 5.20071 5.22283 5.37840 5.44477 5.81401 5.90065 5.91124 6.05452 6.24399 6.55554 6.63231 6.98898 7.41157 7.77921 8.63787 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002953 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.833633 B = 9479.235497 C =11029.515858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.482 3.518 4 O -0.522 6.522 5 C -0.096 4.096 6 S -0.224 6.224 7 C -0.063 4.063 8 C -0.090 4.090 9 C 0.487 3.513 10 O -0.582 6.582 11 N -0.396 5.396 12 C -0.381 4.381 13 H 0.099 0.901 14 C 0.024 3.976 15 N -0.875 5.875 16 Si 0.976 3.024 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.255 1.255 20 C 0.150 3.850 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.165 4.165 24 C -0.120 4.120 25 C -0.216 4.216 26 H 0.137 0.863 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.274 0.726 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 -9.865 3.431 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.324 3.676 4 O -0.411 6.411 5 C -0.244 4.244 6 S 0.002 5.998 7 C -0.211 4.211 8 C -0.131 4.131 9 C 0.279 3.721 10 O -0.469 6.469 11 N -0.104 5.104 12 C -0.507 4.507 13 H 0.117 0.883 14 C -0.182 4.182 15 N -0.508 5.508 16 Si 0.798 3.202 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.179 1.179 20 C 0.054 3.946 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.184 4.184 24 C -0.138 4.138 25 C -0.235 4.235 26 H 0.155 0.845 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.099 -9.154 3.254 13.311 hybrid contribution 0.396 0.214 -0.380 0.589 sum -8.703 -8.940 2.874 12.804 Atomic orbital electron populations 1.23616 0.74155 1.06005 1.02672 1.86476 1.25328 1.31579 1.83741 1.22865 0.90979 0.81720 0.72016 1.90724 1.67327 1.37258 1.45771 1.23095 0.91253 0.98833 1.11187 1.87589 1.05534 1.08291 1.98350 1.23081 0.91942 0.99664 1.06459 1.20898 0.90233 0.96540 1.05446 1.21303 0.90668 0.82961 0.77181 1.90148 1.73004 1.29417 1.54283 1.41208 1.02737 1.06576 1.59859 1.19613 1.32176 0.92099 1.06853 0.88321 1.26304 0.95127 1.03874 0.92925 1.70135 1.37703 1.36507 1.06439 0.85187 0.79565 0.77515 0.77923 1.19339 1.20789 1.17868 1.18673 0.84394 0.94386 0.97146 1.21074 0.93781 0.98227 1.01798 1.21145 0.93626 0.98552 1.01093 1.21223 1.00341 0.92297 1.04566 1.21259 0.93192 0.99120 1.00245 1.22856 0.96464 0.98953 1.05236 0.84528 0.91840 0.91956 0.83582 0.83237 0.89601 0.88526 0.87951 0.89054 0.91596 0.86663 0.85108 0.84096 0.84566 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -6.45 10.57 -51.40 -0.54 -7.00 16 3 C 0.48 10.95 7.98 71.24 0.57 11.52 16 4 O -0.52 -15.67 15.61 21.96 0.34 -15.33 16 5 C -0.10 -1.87 6.54 71.24 0.47 -1.40 16 6 S -0.22 -6.37 20.88 -56.49 -1.18 -7.55 16 7 C -0.06 -1.91 5.24 71.98 0.38 -1.53 16 8 C -0.09 -3.39 4.53 29.85 0.14 -3.26 16 9 C 0.49 22.43 7.57 87.66 0.66 23.09 16 10 O -0.58 -27.53 12.37 -3.03 -0.04 -27.57 16 11 N -0.40 -19.89 2.62 -458.89 -1.20 -21.09 16 12 C -0.38 -18.66 7.61 84.02 0.64 -18.02 16 13 H 0.10 4.59 7.85 -2.91 -0.02 4.57 16 14 C 0.02 1.18 3.49 84.91 0.30 1.47 16 15 N -0.87 -45.64 11.39 21.65 0.25 -45.39 16 16 Si 0.98 38.17 29.57 68.60 2.03 40.20 16 17 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 20 C 0.15 7.60 6.05 38.22 0.23 7.83 16 21 C -0.13 -6.14 7.87 22.41 0.18 -5.96 16 22 C -0.13 -5.06 10.04 22.25 0.22 -4.84 16 23 C -0.17 -6.05 10.04 22.30 0.22 -5.83 16 24 C -0.12 -4.70 10.04 22.25 0.22 -4.47 16 25 C -0.22 -10.11 9.06 22.41 0.20 -9.90 16 26 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 28 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 29 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.10 2.77 8.04 -2.39 -0.02 2.75 16 33 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.09 3.66 8.04 -2.39 -0.02 3.64 16 35 H 0.27 13.58 8.32 -92.71 -0.77 12.81 16 36 H 0.12 5.81 5.15 -2.91 -0.02 5.79 16 37 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.17 7.97 4.50 -64.42 -0.29 7.68 16 Total: -1.00 -65.31 354.00 6.06 -59.25 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.78 Total: 34.22 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.62 Total: -9.75 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -0.96 Total: -66.48 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.24 Total: -49.90 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -1.18 Total: -7.55 kcal Total: -65.31 6.06 -59.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171858384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.980 kcal (2) G-P(sol) polarization free energy of solvation -65.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds