Wall clock time and date at job start Tue Mar 31 2020 13:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35981 * 117.00053 * 2 1 4 4 C 1.38720 * 120.02690 * 0.02562 * 3 2 1 5 5 C 1.38183 * 120.23555 * 180.02562 * 4 3 2 6 6 C 1.38689 * 120.12319 * 359.94495 * 5 4 3 7 7 C 1.39205 * 119.63182 * 359.95323 * 6 5 4 8 8 C 1.38566 * 120.22400 * 0.14022 * 7 6 5 9 9 N 1.40552 * 119.74099 * 180.24674 * 7 6 5 10 10 C 1.34777 * 121.15148 * 166.20148 * 9 7 6 11 11 O 1.21289 * 120.00056 * 354.20862 * 10 9 7 12 12 C 1.50694 * 119.99751 * 174.21105 * 10 9 7 13 13 S 1.81001 * 109.47272 * 185.51989 * 12 10 9 14 14 C 1.76194 * 100.00132 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00379 * 359.97438 * 14 13 12 16 16 C 1.38804 * 120.00321 * 180.02562 * 14 13 12 17 17 N 1.31630 * 119.99485 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00273 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47441 * 89.99804 * 18 16 14 20 20 H 1.48506 * 109.46997 * 209.99735 * 18 16 14 21 21 H 1.48504 * 109.47149 * 329.99769 * 18 16 14 22 22 C 1.47294 * 117.69325 * 346.22555 * 9 7 6 23 23 C 1.53540 * 107.57645 * 41.97674 * 22 9 7 24 24 H 1.08999 * 109.58025 * 61.58866 * 23 22 9 25 25 C 1.53003 * 109.69130 * 181.92675 * 23 22 9 26 26 O 1.36003 * 119.59730 * 179.79563 * 6 5 4 27 27 H 1.09007 * 109.47230 * 299.99735 * 1 2 3 28 28 H 1.08994 * 109.47577 * 59.99369 * 1 2 3 29 29 H 1.09000 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.88336 * 0.34765 * 4 3 2 31 31 H 1.07995 * 119.93708 * 179.97438 * 5 4 3 32 32 H 1.08003 * 120.08032 * 179.91430 * 8 7 6 33 33 H 1.08998 * 109.47463 * 305.51889 * 12 10 9 34 34 H 1.09007 * 109.47444 * 65.51681 * 12 10 9 35 35 H 0.96998 * 119.99919 * 180.02562 * 17 16 14 36 36 H 1.08994 * 109.83473 * 282.46197 * 22 9 7 37 37 H 1.08998 * 109.89103 * 161.52531 * 22 9 7 38 38 H 1.09000 * 109.47476 * 179.38714 * 25 23 22 39 39 H 1.09001 * 109.47240 * 299.38857 * 25 23 22 40 40 H 1.09001 * 109.47346 * 59.38623 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9142 3.6088 0.0000 6 6 3.2987 3.6894 0.0001 7 6 4.0561 2.5215 0.0017 8 6 3.4311 1.2848 0.0003 9 7 5.4594 2.6005 0.0070 10 6 6.2174 1.5210 0.2838 11 8 5.6928 0.4859 0.6364 12 6 7.7168 1.6003 0.1553 13 16 8.4337 -0.0382 0.4336 14 6 10.1431 0.3371 0.2301 15 1 10.4510 1.3470 0.0022 16 6 11.0943 -0.6653 0.3615 17 7 10.7191 -1.8961 0.6388 18 14 12.9065 -0.2675 0.1451 19 1 13.4895 0.1149 1.4562 20 1 13.6156 -1.4608 -0.3828 21 1 13.0552 0.8596 -0.8104 22 6 6.0728 3.9040 -0.2998 23 6 5.2601 4.9824 0.4309 24 1 5.3091 4.8108 1.5062 25 6 5.8287 6.3652 0.1059 26 8 3.9006 4.9090 -0.0047 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2130 2.3172 0.0066 31 1 1.3217 4.5118 0.0000 32 1 4.0210 0.3801 0.0001 33 1 7.9780 1.9459 -0.8449 34 1 8.1086 2.2987 0.8949 35 1 11.3838 -2.5966 0.7311 36 1 6.0428 4.0830 -1.3746 37 1 7.1054 3.9192 0.0489 38 1 5.2427 7.1285 0.6177 39 1 6.8653 6.4192 0.4387 40 1 5.7834 6.5330 -0.9701 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172718895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:11 Heat of formation + Delta-G solvation = -65.237247 kcal Electronic energy + Delta-G solvation = -24799.628212 eV Core-core repulsion = 21093.198745 eV Total energy + Delta-G solvation = -3706.429468 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40926 -39.50073 -38.92283 -36.58504 -35.37803 -32.51359 -32.48363 -31.19660 -29.62392 -28.11084 -27.31324 -26.51066 -25.54643 -23.43827 -22.81501 -21.09272 -19.73114 -18.43427 -17.98888 -17.65245 -16.91881 -16.54547 -15.98859 -15.79082 -15.63367 -15.14291 -14.85993 -14.79737 -14.25040 -13.77718 -13.65695 -13.61226 -13.20718 -13.18379 -12.79686 -12.66279 -12.58740 -12.46837 -12.21269 -12.06964 -11.50587 -11.45958 -11.19958 -11.10626 -11.06018 -10.82646 -10.44618 -10.10955 -9.89004 -9.27726 -9.12503 -8.33857 -8.24048 -7.62858 -6.59041 -6.27730 -3.99837 1.20262 1.40185 2.46846 2.76546 3.02546 3.15295 3.18692 3.25836 3.32703 3.47406 3.76571 4.12718 4.22324 4.46542 4.63118 4.68844 4.82510 4.89349 4.99122 5.02119 5.03821 5.07761 5.09925 5.29011 5.31675 5.34782 5.44743 5.47482 5.56634 5.68501 5.76030 5.85174 5.88822 5.95621 6.05849 6.23936 6.42835 6.76739 7.17057 7.25416 7.48677 7.53345 8.23158 8.28668 9.17472 10.79675 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.003449 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.674453 B = 8115.498646 C = 9923.404712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.121 3.879 4 C -0.203 4.203 5 C -0.089 4.089 6 C 0.053 3.947 7 C 0.132 3.868 8 C -0.149 4.149 9 N -0.563 5.563 10 C 0.536 3.464 11 O -0.483 6.483 12 C -0.152 4.152 13 S -0.054 6.054 14 C -0.538 4.538 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.866 5.866 18 Si 0.920 3.080 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.071 3.929 23 C 0.075 3.925 24 H 0.078 0.922 25 C -0.143 4.143 26 O -0.311 6.311 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.176 0.824 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.269 0.731 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.941 14.918 -2.001 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.075 3.925 4 C -0.222 4.222 5 C -0.108 4.108 6 C 0.006 3.994 7 C 0.037 3.963 8 C -0.170 4.170 9 N -0.289 5.289 10 C 0.326 3.674 11 O -0.356 6.356 12 C -0.302 4.302 13 S 0.173 5.827 14 C -0.686 4.686 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.501 5.501 18 Si 0.746 3.254 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.052 4.052 23 C 0.017 3.983 24 H 0.096 0.904 25 C -0.200 4.200 26 O -0.226 6.226 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.192 0.808 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.538 13.118 -1.584 21.959 hybrid contribution 1.695 1.524 -0.381 2.310 sum -15.844 14.642 -1.965 21.663 Atomic orbital electron populations 1.23029 0.78766 1.03811 1.01077 1.86133 1.20932 1.26573 1.88877 1.18728 0.91753 0.84167 0.97823 1.20946 0.99871 0.91372 1.10035 1.20052 0.90595 0.97863 1.02267 1.18370 0.91782 0.82669 1.06537 1.17657 0.82719 0.93126 1.02845 1.20968 0.92074 0.98925 1.05009 1.45925 1.03489 1.11170 1.68300 1.20591 0.89243 0.81995 0.75586 1.90583 1.73174 1.29115 1.42704 1.23589 0.92227 1.09140 1.05229 1.85466 1.03362 1.01196 1.92694 1.22837 0.91175 0.98047 1.56522 0.90817 1.24998 0.99667 0.94404 0.94441 1.70009 1.34677 1.00613 1.44801 0.86149 0.82578 0.78107 0.78559 1.20219 1.20699 1.19653 1.22774 0.99142 0.81523 1.01736 1.22769 0.80395 0.96506 0.98597 0.90446 1.21758 1.01218 0.93637 1.03431 1.86022 1.26886 1.26826 1.82845 0.92806 0.92817 0.88351 0.85028 0.84769 0.80751 0.88818 0.88701 0.92067 0.89319 0.87097 0.90911 0.89844 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.38 10.50 -19.68 -0.21 -4.59 16 3 C 0.12 1.78 6.69 -39.24 -0.26 1.52 16 4 C -0.20 -2.40 9.03 -39.42 -0.36 -2.76 16 5 C -0.09 -1.07 9.96 -39.43 -0.39 -1.46 16 6 C 0.05 0.74 6.52 -39.06 -0.25 0.49 16 7 C 0.13 2.12 6.33 -83.38 -0.53 1.60 16 8 C -0.15 -2.57 8.87 -39.30 -0.35 -2.92 16 9 N -0.56 -8.91 3.01 -112.36 -0.34 -9.25 16 10 C 0.54 10.29 7.60 -10.99 -0.08 10.21 16 11 O -0.48 -10.88 12.74 5.55 0.07 -10.81 16 12 C -0.15 -2.97 4.63 36.00 0.17 -2.81 16 13 S -0.05 -1.42 20.58 -107.50 -2.21 -3.64 16 14 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 15 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 18 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.07 0.82 5.70 -3.33 -0.02 0.80 16 23 C 0.07 0.77 3.58 -26.45 -0.09 0.68 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.14 -1.01 9.59 37.16 0.36 -0.65 16 26 O -0.31 -3.91 9.97 -19.75 -0.20 -4.10 16 27 H 0.05 0.40 7.65 -51.92 -0.40 0.00 16 28 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.13 1.15 6.28 -52.49 -0.33 0.82 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.18 3.49 5.16 -52.57 -0.27 3.22 16 33 H 0.09 1.68 8.08 -51.92 -0.42 1.26 16 34 H 0.09 1.68 7.63 -51.91 -0.40 1.28 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.11 1.11 6.44 -51.93 -0.33 0.78 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -34.46 346.13 -7.63 -42.09 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.05 Total: 0.79 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -0.63 Total: -6.68 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.40 Total: -34.22 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.33 Total: -19.50 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.46 -7.63 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172718895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.148 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds