Wall clock time and date at job start Tue Mar 31 2020 13:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47005 * 142.97345 * 3 2 1 5 5 C 1.36933 * 119.99708 * 274.99727 * 4 3 2 6 6 H 1.08010 * 119.99768 * 187.00211 * 5 4 3 7 7 C 1.38810 * 120.00551 * 7.00118 * 5 4 3 8 8 N 1.31615 * 119.99733 * 24.75373 * 7 5 4 9 9 Si 1.86797 * 120.00274 * 204.75920 * 7 5 4 10 10 H 1.48497 * 109.47111 * 89.99756 * 9 7 5 11 11 H 1.48496 * 109.47021 * 209.99934 * 9 7 5 12 12 H 1.48505 * 109.47025 * 329.99847 * 9 7 5 13 13 S 1.65599 * 120.00111 * 94.99965 * 4 3 2 14 14 O 1.42104 * 106.40415 * 150.33386 * 13 4 3 15 15 O 1.42101 * 106.40348 * 17.41669 * 13 4 3 16 16 C 1.76198 * 107.21684 * 263.87455 * 13 4 3 17 17 C 1.38265 * 119.94424 * 270.29304 * 16 13 4 18 18 C 1.38145 * 120.05285 * 180.29810 * 17 16 13 19 19 C 1.38730 * 119.94407 * 359.43241 * 18 17 16 20 20 O 1.35900 * 120.05507 * 180.29758 * 19 18 17 21 21 C 1.42901 * 117.00422 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47786 * 179.97438 * 21 20 19 23 23 C 1.52992 * 109.47460 * 179.97438 * 22 21 20 24 24 C 1.38728 * 119.89130 * 0.27399 * 19 18 17 25 25 C 1.38149 * 119.94229 * 359.97438 * 24 19 18 26 26 H 4.40634 * 5.51283 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47531 * 22.97137 * 3 2 1 28 28 H 1.08999 * 109.46949 * 262.97349 * 3 2 1 29 29 H 0.97001 * 119.99970 * 180.02562 * 8 7 5 30 30 H 1.07999 * 119.97382 * 0.03292 * 17 16 13 31 31 H 1.08006 * 120.02752 * 179.70315 * 18 17 16 32 32 H 1.08998 * 109.46986 * 299.99944 * 21 20 19 33 33 H 1.09007 * 109.46821 * 59.99241 * 21 20 19 34 34 H 1.08998 * 109.47075 * 300.00211 * 22 21 20 35 35 H 1.09010 * 109.46580 * 59.99765 * 22 21 20 36 36 H 1.09001 * 109.47411 * 180.02562 * 23 22 21 37 37 H 1.08998 * 109.47527 * 300.00397 * 23 22 21 38 38 H 1.09013 * 109.46562 * 60.00332 * 23 22 21 39 39 H 1.08003 * 120.03119 * 180.02562 * 24 19 18 40 40 H 1.07996 * 119.96890 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1036 -0.8317 5 6 3.2647 0.9350 -2.1843 6 1 3.7292 1.7054 -2.7821 7 6 2.8005 -0.2259 -2.7873 8 7 1.8405 -0.9241 -2.2189 9 14 3.5384 -0.7974 -4.4054 10 1 4.6904 -1.6945 -4.1347 11 1 2.5110 -1.5327 -5.1857 12 1 4.0005 0.3809 -5.1823 13 16 3.5270 2.5541 -0.1362 14 8 4.5492 3.1223 -0.9435 15 8 3.6838 2.3032 1.2537 16 6 2.1233 3.6069 -0.2966 17 6 1.9853 4.4074 -1.4155 18 6 0.8887 5.2382 -1.5407 19 6 -0.0803 5.2603 -0.5481 20 8 -1.1630 6.0723 -0.6719 21 6 -2.1207 6.0427 0.3883 22 6 -3.2594 7.0152 0.0743 23 6 -4.2851 6.9830 1.2091 24 6 0.0575 4.4517 0.5707 25 6 1.1585 3.6263 0.6936 26 1 -1.0501 -0.0004 0.0001 27 1 3.0099 -0.9453 -0.4011 28 1 3.0093 0.1265 1.0199 29 1 1.5163 -1.7356 -2.6400 30 1 2.7374 4.3862 -2.1902 31 1 0.7837 5.8669 -2.4126 32 1 -2.5212 5.0339 0.4881 33 1 -1.6393 6.3364 1.3211 34 1 -2.8587 8.0239 -0.0252 35 1 -3.7409 6.7218 -0.8586 36 1 -5.0965 7.6755 0.9852 37 1 -4.6858 5.9742 1.3082 38 1 -3.8038 7.2762 2.1422 39 1 -0.6958 4.4667 1.3445 40 1 1.2659 2.9963 1.5642 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281268892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:43 Heat of formation + Delta-G solvation = -35.807007 kcal Electronic energy + Delta-G solvation = -25269.267895 eV Core-core repulsion = 21564.114618 eV Total energy + Delta-G solvation = -3705.153277 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.19880 -38.58433 -38.06209 -37.82936 -36.44199 -34.88033 -33.68641 -32.85260 -32.11319 -31.05257 -28.29747 -27.57819 -25.62444 -24.11917 -23.61409 -22.17765 -20.33491 -19.78380 -19.37352 -18.79786 -18.29305 -17.85223 -17.33159 -17.17733 -16.37668 -16.11723 -15.72985 -15.29499 -15.15737 -15.08177 -14.91147 -14.52704 -14.21453 -14.15716 -13.59799 -13.53462 -13.51689 -13.09429 -12.99573 -12.76740 -12.67145 -12.60484 -12.40579 -12.26645 -12.22318 -11.99116 -11.80663 -11.69878 -11.59747 -11.29756 -10.89450 -10.52205 -10.10424 -10.05186 -9.51474 -8.26498 -5.78294 -0.19973 0.08464 0.28549 1.51661 1.56943 1.65215 2.03367 2.08250 2.37808 2.50216 2.53210 2.85886 2.97555 3.25769 3.59856 3.75274 3.83571 3.89884 3.97166 4.02244 4.22910 4.28771 4.30115 4.49710 4.51032 4.57333 4.61026 4.77720 4.90799 4.96916 4.99727 5.08584 5.14946 5.16290 5.24850 5.30629 5.32595 5.47105 5.57327 5.66644 6.29195 6.39208 6.84089 7.23684 7.29143 8.63701 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.004009 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.197432 B = 6982.348213 C = 7292.961234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.138 4.138 3 C 0.237 3.763 4 N -0.814 5.814 5 C -0.287 4.287 6 H 0.112 0.888 7 C 0.003 3.997 8 N -0.842 5.842 9 Si 0.985 3.015 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.264 1.264 13 S 2.575 3.425 14 O -1.004 7.004 15 O -1.014 7.014 16 C -0.714 4.714 17 C 0.000 4.000 18 C -0.182 4.182 19 C 0.164 3.836 20 O -0.321 6.321 21 C 0.044 3.956 22 C -0.119 4.119 23 C -0.147 4.147 24 C -0.228 4.228 25 C 0.002 3.998 26 H 0.225 0.775 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.275 0.725 30 H 0.138 0.862 31 H 0.152 0.848 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.158 0.842 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 8.216 3.437 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.141 4.141 3 C 0.112 3.888 4 N -0.637 5.637 5 C -0.430 4.430 6 H 0.130 0.870 7 C -0.207 4.207 8 N -0.480 5.480 9 Si 0.808 3.192 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.188 1.188 13 S 2.675 3.325 14 O -0.994 6.994 15 O -1.004 7.004 16 C -0.797 4.797 17 C -0.020 4.020 18 C -0.201 4.201 19 C 0.118 3.882 20 O -0.235 6.235 21 C -0.030 4.030 22 C -0.157 4.157 23 C -0.204 4.204 24 C -0.247 4.247 25 C -0.017 4.017 26 H 0.241 0.759 27 H 0.124 0.876 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.156 0.844 31 H 0.170 0.830 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.175 0.825 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.930 8.598 3.841 13.685 hybrid contribution -0.700 -0.289 -0.801 1.102 sum -10.630 8.310 3.041 13.831 Atomic orbital electron populations 1.24874 0.96078 1.01595 1.05263 1.23508 0.94982 0.99293 0.96277 1.18387 0.84606 0.92128 0.93651 1.54802 1.74219 1.19779 1.14919 1.20030 1.33695 1.05454 0.83838 0.87014 1.26135 0.94875 0.97503 1.02170 1.70296 1.21435 1.16242 1.40049 0.85047 0.78082 0.78806 0.77282 1.19505 1.20590 1.18848 1.08782 0.77741 0.73089 0.72844 1.93343 1.57646 1.78618 1.69820 1.93318 1.87832 1.85211 1.34044 1.31774 1.24985 1.19355 1.03611 1.20798 0.95933 0.90518 0.94720 1.20722 0.94544 1.04173 1.00655 1.19195 0.86721 0.88746 0.93588 1.86047 1.30711 1.59553 1.47169 1.23267 0.88919 1.01612 0.89210 1.21503 0.94425 0.98970 1.00776 1.21689 0.98307 1.02977 0.97413 1.21514 1.01481 1.01650 1.00061 1.20738 0.91003 0.94048 0.95915 0.75869 0.87625 0.89367 0.91399 0.84403 0.83026 0.91223 0.90850 0.90768 0.91046 0.90616 0.92030 0.91828 0.82471 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.47 19.21 74.32 1.43 -9.04 16 2 C -0.14 -6.15 11.06 31.13 0.34 -5.80 16 3 C 0.24 10.75 5.45 84.58 0.46 11.21 16 4 N -0.81 -39.01 2.89 -352.51 -1.02 -40.03 16 5 C -0.29 -14.12 9.46 84.03 0.79 -13.33 16 6 H 0.11 5.50 7.36 -2.91 -0.02 5.48 16 7 C 0.00 0.13 4.94 84.86 0.42 0.55 16 8 N -0.84 -40.11 8.82 21.65 0.19 -39.92 16 9 Si 0.98 37.87 29.62 68.60 2.03 39.91 16 10 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 12 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 13 S 2.57 121.28 5.64 -56.49 -0.32 120.96 16 14 O -1.00 -51.27 16.24 -128.00 -2.08 -53.35 16 15 O -1.01 -49.41 15.73 -128.00 -2.01 -51.42 16 16 C -0.71 -30.32 5.97 22.28 0.13 -30.19 16 17 C 0.00 -0.02 9.51 22.25 0.21 0.19 16 18 C -0.18 -6.22 9.99 22.37 0.22 -6.00 16 19 C 0.16 5.28 6.69 22.50 0.15 5.43 16 20 O -0.32 -8.81 10.14 -92.42 -0.94 -9.74 16 21 C 0.04 0.87 4.74 71.98 0.34 1.21 16 22 C -0.12 -1.78 6.30 30.59 0.19 -1.59 16 23 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 24 C -0.23 -7.29 9.04 22.37 0.20 -7.09 16 25 C 0.00 0.09 9.52 22.26 0.21 0.30 16 26 H 0.22 7.21 7.80 -4.41 -0.03 7.17 16 27 H 0.11 4.85 6.55 -2.39 -0.02 4.84 16 28 H 0.09 3.74 6.87 -2.39 -0.02 3.72 16 29 H 0.28 12.44 8.31 -92.71 -0.77 11.67 16 30 H 0.14 5.32 7.62 -2.91 -0.02 5.30 16 31 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.07 1.29 7.66 -2.39 -0.02 1.28 16 33 H 0.07 1.29 7.66 -2.38 -0.02 1.27 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.16 3.88 6.30 -2.91 -0.02 3.86 16 40 H 0.13 4.92 7.61 -2.91 -0.02 4.89 16 Total: -1.00 -62.18 354.70 2.73 -59.46 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 1.04 Total: 29.16 kcal Atomic # 6 Polarization: -60.85 SS G_CDS: 5.83 Total: -55.02 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -0.83 Total: -79.95 kcal Atomic # 8 Polarization: -109.49 SS G_CDS: -5.03 Total: -114.51 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 16 Polarization: 121.28 SS G_CDS: -0.32 Total: 120.96 kcal Total: -62.18 2.73 -59.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281268892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.649 kcal (2) G-P(sol) polarization free energy of solvation -62.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds