Wall clock time and date at job start Tue Mar 31 2020 14:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 109.47104 * 2 1 4 4 C 1.81404 * 103.00195 * 243.61223 * 2 1 3 5 5 C 1.53000 * 115.54694 * 294.30417 * 4 2 1 6 6 N 1.46496 * 109.47184 * 271.02256 * 5 4 2 7 7 C 1.34776 * 120.00131 * 185.02986 * 6 5 4 8 8 O 1.21589 * 119.99932 * 354.96611 * 7 6 5 9 9 C 1.47538 * 119.99961 * 174.96980 * 7 6 5 10 10 C 1.39663 * 120.19345 * 5.37805 * 9 7 6 11 11 C 1.37840 * 119.91427 * 179.97438 * 10 9 7 12 12 C 1.38566 * 120.32521 * 359.97438 * 11 10 9 13 13 C 1.38031 * 120.39989 * 359.97438 * 12 11 10 14 14 C 1.38832 * 120.07360 * 359.97438 * 13 12 11 15 15 O 1.35523 * 120.15984 * 180.02562 * 14 13 12 16 16 C 1.34803 * 117.00100 * 354.39589 * 15 14 13 17 17 H 1.08001 * 120.00425 * 5.06627 * 16 15 14 18 18 C 1.38707 * 120.00058 * 185.07823 * 16 15 14 19 19 N 1.31516 * 119.99670 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00202 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46939 * 59.99566 * 20 18 16 22 22 H 1.48499 * 109.47160 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47066 * 300.00072 * 20 18 16 24 24 C 1.52999 * 117.51525 * 80.00347 * 4 2 1 25 25 C 1.52997 * 60.00063 * 107.48350 * 24 4 2 26 26 H 1.09000 * 109.47435 * 181.59760 * 1 2 3 27 27 H 1.09002 * 109.47211 * 301.60383 * 1 2 3 28 28 H 1.09002 * 109.47126 * 61.59793 * 1 2 3 29 29 H 1.09002 * 109.46761 * 151.02435 * 5 4 2 30 30 H 1.09003 * 109.47453 * 31.02934 * 5 4 2 31 31 H 0.97007 * 119.99719 * 5.03779 * 6 5 4 32 32 H 1.07999 * 120.04684 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.83474 * 179.97438 * 11 10 9 34 34 H 1.07996 * 119.80261 * 180.28352 * 12 11 10 35 35 H 1.08004 * 119.96150 * 180.02562 * 13 12 11 36 36 H 0.96998 * 119.99950 * 179.97438 * 19 18 16 37 37 H 1.09007 * 117.49614 * 214.97242 * 24 4 2 38 38 H 1.08994 * 117.50166 * 359.97438 * 24 4 2 39 39 H 1.09001 * 117.49499 * 252.51286 * 25 24 4 40 40 H 1.08999 * 117.50320 * 107.48873 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2221 -0.7856 -1.5834 5 6 1.8170 -2.2551 -1.7146 6 7 2.9047 -3.1069 -1.2274 7 6 2.8134 -4.4469 -1.3400 8 8 1.7914 -4.9533 -1.7611 9 6 3.9535 -5.2991 -0.9520 10 6 5.0861 -4.7321 -0.3635 11 6 6.1477 -5.5338 -0.0028 12 6 6.0974 -6.9013 -0.2206 13 6 4.9842 -7.4758 -0.8003 14 6 3.9051 -6.6841 -1.1691 15 8 2.8110 -7.2463 -1.7379 16 6 2.8783 -8.5616 -2.0253 17 1 3.7432 -9.1359 -1.7279 18 6 1.8367 -9.1776 -2.7033 19 7 0.7832 -8.4783 -3.0653 20 14 1.9302 -11.0000 -3.1022 21 1 2.0474 -11.7771 -1.8422 22 1 0.7002 -11.4123 -3.8250 23 1 3.1172 -11.2596 -3.9560 24 6 2.1516 0.0819 -2.8417 25 6 3.5101 -0.3428 -2.2805 26 1 -0.3634 -1.0272 0.0287 27 1 -0.3634 0.5385 0.8753 28 1 -0.3633 0.4888 -0.9040 29 1 1.6167 -2.4846 -2.7612 30 1 0.9193 -2.4387 -1.1242 31 1 3.6907 -2.7065 -0.8237 32 1 5.1300 -3.6669 -0.1912 33 1 7.0231 -5.0939 0.4518 34 1 6.9322 -7.5221 0.0694 35 1 4.9524 -8.5425 -0.9665 36 1 0.0550 -8.9089 -3.5398 37 1 1.8166 -0.3944 -3.7632 38 1 1.8596 1.1247 -2.7184 39 1 4.1120 0.4208 -1.7878 40 1 4.0689 -1.0984 -2.8326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282248596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:43 Heat of formation + Delta-G solvation = -36.038192 kcal Electronic energy + Delta-G solvation = -24679.320372 eV Core-core repulsion = 20974.157070 eV Total energy + Delta-G solvation = -3705.163302 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.66009 -38.48640 -37.30325 -36.33282 -35.92512 -33.50573 -32.34602 -30.63099 -29.16416 -28.92719 -27.01341 -25.34677 -23.10769 -22.70130 -21.66464 -21.09074 -19.84594 -18.12405 -17.89683 -17.23900 -16.60221 -16.11889 -15.60827 -14.90183 -14.83631 -14.58883 -14.50128 -14.20766 -14.04988 -13.99600 -13.75442 -13.45510 -13.24444 -12.73583 -12.65622 -12.47814 -12.30301 -11.92162 -11.73364 -11.71657 -11.31850 -11.15026 -11.06720 -10.89804 -10.89261 -10.79187 -10.48617 -10.20252 -9.58542 -8.88508 -8.87215 -8.62902 -8.39114 -8.26768 -7.31618 -6.45576 -4.05403 1.30245 1.71172 2.31728 2.31996 3.11191 3.13010 3.15490 3.17469 3.51799 3.72557 3.83921 3.92808 4.42853 4.54037 4.63926 4.67565 4.93347 5.05961 5.08326 5.16957 5.29918 5.35079 5.48083 5.53474 5.60503 5.65517 5.72411 5.79296 5.83399 5.91800 6.10064 6.11561 6.55813 6.68387 6.89197 6.91465 7.05681 7.23617 7.28634 7.68996 7.90978 8.10642 8.94247 9.07160 9.66551 10.68181 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.003310 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.710860 B = 8456.391895 C = 9582.633960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.487 4.487 2 S 1.281 4.719 3 O -0.853 6.853 4 C -0.468 4.468 5 C 0.188 3.812 6 N -0.742 5.742 7 C 0.556 3.444 8 O -0.501 6.501 9 C -0.227 4.227 10 C -0.038 4.038 11 C -0.230 4.230 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.189 3.811 15 O -0.124 6.124 16 C -0.404 4.404 17 H 0.093 0.907 18 C 0.046 3.954 19 N -0.833 5.833 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.147 4.147 25 C -0.125 4.125 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.272 0.728 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 11.959 5.795 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 1.479 4.521 3 O -0.848 6.848 4 C -0.565 4.565 5 C 0.063 3.937 6 N -0.399 5.399 7 C 0.345 3.655 8 O -0.375 6.375 9 C -0.232 4.232 10 C -0.057 4.057 11 C -0.249 4.249 12 C -0.070 4.070 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.022 6.022 16 C -0.480 4.480 17 H 0.111 0.889 18 C -0.162 4.162 19 N -0.465 5.465 20 Si 0.764 3.236 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.185 4.185 25 C -0.163 4.163 26 H 0.137 0.863 27 H 0.122 0.878 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.229 0.771 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.969 11.967 5.931 13.933 hybrid contribution -0.378 0.351 -1.746 1.821 sum 3.591 12.318 4.185 13.496 Atomic orbital electron populations 1.27593 1.21101 1.08791 1.07019 1.70588 0.86836 0.97702 0.97021 1.93063 1.73997 1.37133 1.80636 1.29507 1.10855 1.03840 1.12306 1.20247 0.90147 0.82612 1.00669 1.45888 1.22177 1.06139 1.65666 1.18218 0.87845 0.81006 0.78404 1.90953 1.29989 1.72968 1.43590 1.18831 0.97227 0.91237 1.15902 1.20775 0.91988 0.98087 0.94852 1.20470 0.99789 0.93962 1.10729 1.20899 0.96385 0.94722 0.94945 1.21160 0.95259 1.00820 1.08504 1.19280 0.86746 0.90714 0.90302 1.84166 1.29834 1.24735 1.63484 1.21445 1.06458 0.81927 1.38164 0.88936 1.25367 0.94701 1.00383 0.95784 1.70110 1.06216 1.36354 1.33793 0.85810 0.78274 0.80453 0.79061 1.19349 1.20186 1.19399 1.22958 1.01270 0.98684 0.95587 1.22784 0.89421 1.02795 1.01314 0.86319 0.87774 0.89780 0.91142 0.90946 0.77116 0.86880 0.87266 0.87247 0.85147 0.91834 0.87710 0.88530 0.87880 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.93 10.56 101.05 1.07 -2.87 16 2 S 1.28 11.30 13.75 -107.50 -1.48 9.82 16 3 O -0.85 -12.06 17.88 -35.23 -0.63 -12.69 16 4 C -0.47 -4.60 2.06 -90.62 -0.19 -4.79 16 5 C 0.19 2.33 5.70 -4.04 -0.02 2.31 16 6 N -0.74 -10.35 5.37 -61.35 -0.33 -10.68 16 7 C 0.56 11.20 7.75 -12.47 -0.10 11.10 16 8 O -0.50 -12.87 15.19 -16.50 -0.25 -13.12 16 9 C -0.23 -4.61 5.89 -104.81 -0.62 -5.23 16 10 C -0.04 -0.60 9.53 -39.20 -0.37 -0.97 16 11 C -0.23 -3.53 10.03 -39.61 -0.40 -3.93 16 12 C -0.05 -0.86 10.03 -39.54 -0.40 -1.25 16 13 C -0.24 -4.92 9.16 -39.44 -0.36 -5.28 16 14 C 0.19 4.50 6.66 -38.60 -0.26 4.25 16 15 O -0.12 -3.55 7.85 -20.97 -0.16 -3.71 16 16 C -0.40 -11.17 9.49 30.91 0.29 -10.87 16 17 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 18 C 0.05 1.24 5.49 -17.51 -0.10 1.14 16 19 N -0.83 -24.61 13.67 55.48 0.76 -23.85 16 20 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.15 -1.48 9.87 -26.73 -0.26 -1.74 16 25 C -0.12 -1.21 9.51 -26.73 -0.25 -1.47 16 26 H 0.12 0.82 7.53 -51.92 -0.39 0.43 16 27 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 28 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 30 H 0.07 0.85 7.28 -51.93 -0.38 0.47 16 31 H 0.39 4.24 6.32 -40.82 -0.26 3.98 16 32 H 0.11 1.30 6.42 -52.49 -0.34 0.96 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 2.67 5.64 -52.48 -0.30 2.38 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.10 1.03 8.04 -51.92 -0.42 0.61 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -37.58 355.74 -8.57 -46.15 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.85 Total: 7.24 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.96 Total: -19.60 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.43 Total: -34.53 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.05 Total: -29.53 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 11.30 SS G_CDS: -1.48 Total: 9.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.58 -8.57 -46.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282248596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.117 kcal (2) G-P(sol) polarization free energy of solvation -37.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds