Wall clock time and date at job start Tue Mar 31 2020 14:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 109.47104 * 2 1 4 4 C 1.81404 * 103.00195 * 243.61223 * 2 1 3 5 5 C 1.53000 * 115.54694 * 294.30417 * 4 2 1 6 6 N 1.46496 * 109.47184 * 271.02256 * 5 4 2 7 7 C 1.34776 * 120.00131 * 185.02986 * 6 5 4 8 8 O 1.21589 * 119.99932 * 354.96611 * 7 6 5 9 9 C 1.47538 * 119.99961 * 174.96980 * 7 6 5 10 10 C 1.39663 * 120.19345 * 5.37805 * 9 7 6 11 11 C 1.37840 * 119.91427 * 179.97438 * 10 9 7 12 12 C 1.38566 * 120.32521 * 359.97438 * 11 10 9 13 13 C 1.38031 * 120.39989 * 359.97438 * 12 11 10 14 14 C 1.38832 * 120.07360 * 359.97438 * 13 12 11 15 15 O 1.35523 * 120.15984 * 180.02562 * 14 13 12 16 16 C 1.34803 * 117.00100 * 354.39589 * 15 14 13 17 17 H 1.08001 * 120.00425 * 5.06627 * 16 15 14 18 18 C 1.38707 * 120.00058 * 185.07823 * 16 15 14 19 19 N 1.31516 * 119.99670 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00202 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46939 * 59.99566 * 20 18 16 22 22 H 1.48499 * 109.47160 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47066 * 300.00072 * 20 18 16 24 24 C 1.52999 * 117.51525 * 80.00347 * 4 2 1 25 25 C 1.52997 * 60.00063 * 107.48350 * 24 4 2 26 26 H 1.09000 * 109.47435 * 181.59760 * 1 2 3 27 27 H 1.09002 * 109.47211 * 301.60383 * 1 2 3 28 28 H 1.09002 * 109.47126 * 61.59793 * 1 2 3 29 29 H 1.09002 * 109.46761 * 151.02435 * 5 4 2 30 30 H 1.09003 * 109.47453 * 31.02934 * 5 4 2 31 31 H 0.97007 * 119.99719 * 5.03779 * 6 5 4 32 32 H 1.07999 * 120.04684 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.83474 * 179.97438 * 11 10 9 34 34 H 1.07996 * 119.80261 * 180.28352 * 12 11 10 35 35 H 1.08004 * 119.96150 * 180.02562 * 13 12 11 36 36 H 0.96998 * 119.99950 * 179.97438 * 19 18 16 37 37 H 1.09007 * 117.49614 * 214.97242 * 24 4 2 38 38 H 1.08994 * 117.50166 * 359.97438 * 24 4 2 39 39 H 1.09001 * 117.49499 * 252.51286 * 25 24 4 40 40 H 1.08999 * 117.50320 * 107.48873 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2221 -0.7856 -1.5834 5 6 1.8170 -2.2551 -1.7146 6 7 2.9047 -3.1069 -1.2274 7 6 2.8134 -4.4469 -1.3400 8 8 1.7914 -4.9533 -1.7611 9 6 3.9535 -5.2991 -0.9520 10 6 5.0861 -4.7321 -0.3635 11 6 6.1477 -5.5338 -0.0028 12 6 6.0974 -6.9013 -0.2206 13 6 4.9842 -7.4758 -0.8003 14 6 3.9051 -6.6841 -1.1691 15 8 2.8110 -7.2463 -1.7379 16 6 2.8783 -8.5616 -2.0253 17 1 3.7432 -9.1359 -1.7279 18 6 1.8367 -9.1776 -2.7033 19 7 0.7832 -8.4783 -3.0653 20 14 1.9302 -11.0000 -3.1022 21 1 2.0474 -11.7771 -1.8422 22 1 0.7002 -11.4123 -3.8250 23 1 3.1172 -11.2596 -3.9560 24 6 2.1516 0.0819 -2.8417 25 6 3.5101 -0.3428 -2.2805 26 1 -0.3634 -1.0272 0.0287 27 1 -0.3634 0.5385 0.8753 28 1 -0.3633 0.4888 -0.9040 29 1 1.6167 -2.4846 -2.7612 30 1 0.9193 -2.4387 -1.1242 31 1 3.6907 -2.7065 -0.8237 32 1 5.1300 -3.6669 -0.1912 33 1 7.0231 -5.0939 0.4518 34 1 6.9322 -7.5221 0.0694 35 1 4.9524 -8.5425 -0.9665 36 1 0.0550 -8.9089 -3.5398 37 1 1.8166 -0.3944 -3.7632 38 1 1.8596 1.1247 -2.7184 39 1 4.1120 0.4208 -1.7878 40 1 4.0689 -1.0984 -2.8326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282248596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:43 Heat of formation + Delta-G solvation = -64.128235 kcal Electronic energy + Delta-G solvation = -24680.538447 eV Core-core repulsion = 20974.157070 eV Total energy + Delta-G solvation = -3706.381377 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21495 -39.91117 -38.50360 -37.92541 -36.90568 -34.90200 -34.25789 -32.07975 -30.48345 -29.87795 -28.22159 -27.21727 -24.47420 -23.60866 -23.07286 -22.20716 -21.32709 -19.78102 -19.34930 -18.31145 -17.76601 -17.42485 -16.92878 -16.34057 -16.06606 -15.92016 -15.80132 -15.66662 -15.28622 -15.21063 -15.18139 -14.79865 -14.25744 -14.09768 -13.98162 -13.66974 -13.50097 -13.46946 -12.91591 -12.76012 -12.62447 -12.55423 -12.44608 -12.29645 -12.11616 -11.95828 -11.81413 -11.35739 -11.09665 -10.77393 -10.51049 -10.01690 -9.69141 -9.22377 -8.95380 -8.39890 -6.09934 0.21799 0.53585 0.81417 1.35569 1.47874 1.52488 1.54602 2.14229 2.19694 2.21731 2.70380 2.71310 2.94010 3.30478 3.52777 3.55683 3.65525 3.82240 4.09173 4.18091 4.25128 4.36765 4.42394 4.47848 4.54507 4.61029 4.65096 4.71569 4.80200 4.84511 5.03609 5.06865 5.13657 5.14301 5.22952 5.56641 5.60176 5.69194 5.78607 6.01502 6.25480 6.81197 7.00198 7.58755 7.86651 8.80255 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.003310 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.710860 B = 8456.391895 C = 9582.633960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.331 4.669 3 O -0.901 6.901 4 C -0.463 4.463 5 C 0.188 3.812 6 N -0.712 5.712 7 C 0.553 3.447 8 O -0.567 6.567 9 C -0.242 4.242 10 C -0.028 4.028 11 C -0.201 4.201 12 C -0.043 4.043 13 C -0.260 4.260 14 C 0.149 3.851 15 O -0.188 6.188 16 C -0.427 4.427 17 H 0.105 0.895 18 C -0.020 4.020 19 N -0.904 5.904 20 Si 1.018 2.982 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.256 1.256 24 C -0.153 4.153 25 C -0.118 4.118 26 H 0.132 0.868 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.414 0.586 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.120 0.880 36 H 0.270 0.730 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 13.332 7.834 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 1.529 4.471 3 O -0.897 6.897 4 C -0.559 4.559 5 C 0.063 3.937 6 N -0.368 5.368 7 C 0.343 3.657 8 O -0.446 6.446 9 C -0.246 4.246 10 C -0.046 4.046 11 C -0.219 4.219 12 C -0.061 4.061 13 C -0.279 4.279 14 C 0.094 3.906 15 O -0.091 6.091 16 C -0.503 4.503 17 H 0.122 0.878 18 C -0.219 4.219 19 N -0.540 5.540 20 Si 0.837 3.163 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.180 1.180 24 C -0.191 4.191 25 C -0.156 4.156 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.252 0.748 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.167 0.833 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.519 13.419 8.020 17.347 hybrid contribution -1.147 0.263 -2.173 2.472 sum 6.371 13.682 5.847 16.185 Atomic orbital electron populations 1.27623 1.20111 1.09896 1.07349 1.70091 0.86637 0.95382 0.94966 1.92974 1.75731 1.39658 1.81302 1.29378 1.11482 1.01941 1.13120 1.20272 0.90092 0.83766 0.99545 1.45575 1.23130 1.04200 1.63924 1.18416 0.87020 0.82686 0.77618 1.90941 1.32408 1.74568 1.46683 1.19303 0.98921 0.90299 1.16104 1.21363 0.89948 1.00881 0.92432 1.21182 1.00599 0.93059 1.07073 1.21410 0.95696 0.96281 0.92684 1.21287 0.96169 1.00453 1.10029 1.20095 0.87139 0.92728 0.90648 1.84168 1.32568 1.25037 1.67304 1.21956 1.07130 0.82632 1.38555 0.87791 1.26662 0.94038 1.05729 0.95483 1.70299 1.07791 1.38783 1.37139 0.84677 0.78541 0.73786 0.79329 1.17855 1.19926 1.18040 1.22980 1.01973 0.98523 0.95643 1.22843 0.89133 1.02806 1.00830 0.84970 0.86543 0.90390 0.93317 0.90109 0.74764 0.81628 0.81942 0.83281 0.86256 0.92137 0.87746 0.88719 0.87160 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -7.02 10.56 113.37 1.20 -5.82 16 2 S 1.33 20.65 13.75 -56.49 -0.78 19.87 16 3 O -0.90 -23.81 17.88 -148.98 -2.66 -26.48 16 4 C -0.46 -8.31 2.06 -10.79 -0.02 -8.33 16 5 C 0.19 4.53 5.70 86.38 0.49 5.02 16 6 N -0.71 -18.79 5.37 -466.27 -2.50 -21.29 16 7 C 0.55 22.59 7.75 86.70 0.67 23.26 16 8 O -0.57 -31.05 15.19 16.84 0.26 -30.79 16 9 C -0.24 -9.64 5.89 -19.99 -0.12 -9.76 16 10 C -0.03 -0.74 9.53 22.52 0.21 -0.53 16 11 C -0.20 -4.86 10.03 22.25 0.22 -4.64 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 13 C -0.26 -10.68 9.16 22.36 0.20 -10.47 16 14 C 0.15 7.32 6.66 22.91 0.15 7.47 16 15 O -0.19 -11.58 7.85 0.85 0.01 -11.57 16 16 C -0.43 -25.24 9.49 67.93 0.64 -24.60 16 17 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 18 C -0.02 -1.15 5.49 84.85 0.47 -0.69 16 19 N -0.90 -57.88 13.67 21.62 0.30 -57.59 16 20 Si 1.02 43.42 29.55 68.60 2.03 45.44 16 21 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 C -0.15 -2.91 9.87 30.59 0.30 -2.61 16 25 C -0.12 -2.02 9.51 30.59 0.29 -1.73 16 26 H 0.13 1.57 7.53 -2.39 -0.02 1.56 16 27 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.43 7.88 -2.39 -0.02 1.42 16 30 H 0.08 1.86 7.28 -2.39 -0.02 1.84 16 31 H 0.41 7.35 6.32 -92.70 -0.59 6.77 16 32 H 0.17 2.62 6.42 -2.91 -0.02 2.60 16 33 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 36 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16 37 H 0.10 2.00 8.04 -2.38 -0.02 1.98 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.11 1.81 8.12 -2.39 -0.02 1.79 16 40 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -92.81 355.74 2.08 -90.73 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.50 Total: 26.14 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.94 Total: -34.46 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.21 Total: -78.88 kcal Atomic # 8 Polarization: -66.44 SS G_CDS: -2.40 Total: -68.85 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 20.65 SS G_CDS: -0.78 Total: 19.87 kcal Total: -92.81 2.08 -90.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282248596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.599 kcal (2) G-P(sol) polarization free energy of solvation -92.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds