Wall clock time and date at job start Tue Mar 31 2020 13:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46735 * 2 1 4 4 C 1.50699 * 109.47038 * 119.99686 * 2 1 3 5 5 H 1.08000 * 119.99457 * 120.00105 * 4 2 1 6 6 C 1.37874 * 120.00211 * 300.00308 * 4 2 1 7 7 N 1.31519 * 119.99873 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00289 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47456 * 89.99693 * 8 6 4 10 10 H 1.48496 * 109.47534 * 210.00217 * 8 6 4 11 11 H 1.48508 * 109.47069 * 330.00221 * 8 6 4 12 12 N 1.46497 * 109.47363 * 240.00350 * 2 1 3 13 13 S 1.65594 * 120.00215 * 94.99905 * 12 2 1 14 14 O 1.42104 * 106.40243 * 311.45595 * 13 12 2 15 15 O 1.42107 * 106.40278 * 178.54208 * 13 12 2 16 16 C 1.76196 * 107.22060 * 64.99921 * 13 12 2 17 17 C 1.38421 * 120.02414 * 269.99684 * 16 13 12 18 18 C 1.38251 * 120.49249 * 180.09819 * 17 16 13 19 19 C 1.38315 * 120.35685 * 359.91862 * 18 17 16 20 20 C 1.39574 * 119.26434 * 359.93507 * 19 18 17 21 21 C 1.37895 * 120.02064 * 89.99696 * 16 13 12 22 22 C 1.47588 * 120.11131 * 180.34833 * 20 19 18 23 23 O 1.21250 * 121.18130 * 168.56692 * 22 20 19 24 24 C 1.51473 * 117.64086 * 348.58698 * 22 20 19 25 25 C 1.53439 * 107.38413 * 42.49992 * 24 22 20 26 26 C 1.50414 * 119.12188 * 179.74521 * 19 18 17 27 27 H 1.08993 * 109.47244 * 300.00158 * 1 2 3 28 28 H 1.09007 * 109.46885 * 60.00286 * 1 2 3 29 29 H 1.08994 * 109.46783 * 179.97438 * 1 2 3 30 30 H 0.97007 * 119.99744 * 179.97438 * 7 6 4 31 31 H 0.96999 * 119.99557 * 274.99843 * 12 2 1 32 32 H 1.08002 * 119.75584 * 0.11713 * 17 16 13 33 33 H 1.07998 * 119.82445 * 180.19250 * 18 17 16 34 34 H 1.08003 * 120.11953 * 0.05871 * 21 16 13 35 35 H 1.09003 * 109.87653 * 283.03065 * 24 22 20 36 36 H 1.09001 * 109.87600 * 161.97160 * 24 22 20 37 37 H 1.09000 * 109.49026 * 176.03484 * 25 24 22 38 38 H 1.09003 * 109.50022 * 55.99015 * 25 24 22 39 39 H 1.09005 * 109.12304 * 277.99327 * 26 19 18 40 40 H 1.09001 * 109.12331 * 37.14187 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5458 4.4125 10 1 1.3430 -0.9492 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0184 -0.6905 -1.1962 13 16 2.4123 0.1773 -2.5504 14 8 1.3247 1.0593 -2.7922 15 8 2.8778 -0.7634 -3.5085 16 6 3.7928 1.1911 -2.1371 17 6 3.5908 2.4637 -1.6312 18 6 4.6669 3.2681 -1.3056 19 6 5.9603 2.8099 -1.4800 20 6 6.1667 1.5260 -1.9870 21 6 5.0752 0.7174 -2.3173 22 6 7.5388 1.0153 -2.1735 23 8 7.7458 -0.1549 -2.4141 24 6 8.6793 2.0048 -2.0530 25 6 8.3786 2.9065 -0.8485 26 6 7.1105 3.7106 -1.1220 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7088 1.1615 3.4844 31 1 2.1111 -1.6561 -1.1949 32 1 2.5850 2.8307 -1.4896 33 1 4.4969 4.2581 -0.9087 34 1 5.2359 -0.2747 -2.7128 35 1 8.7450 2.6068 -2.9593 36 1 9.6166 1.4722 -1.8923 37 1 9.2137 3.5882 -0.6870 38 1 8.2346 2.2913 0.0397 39 1 7.2952 4.3989 -1.9468 40 1 6.8522 4.2826 -0.2308 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289844195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:55 Heat of formation + Delta-G solvation = -100.799652 kcal Electronic energy + Delta-G solvation = -25525.500089 eV Core-core repulsion = 21817.528520 eV Total energy + Delta-G solvation = -3707.971569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54439 -38.25341 -36.76247 -35.81867 -35.44785 -35.33689 -32.23719 -31.57421 -30.75181 -28.33762 -28.26940 -25.25288 -23.79279 -23.46998 -21.67925 -20.98456 -19.90989 -18.66506 -17.59900 -17.23345 -16.46736 -16.11450 -15.95065 -15.33627 -15.27725 -14.97576 -14.71516 -14.46555 -13.95639 -13.84122 -13.63365 -13.45664 -13.09955 -12.68158 -12.31290 -12.22334 -12.00239 -11.76053 -11.68327 -11.64649 -11.51893 -11.42781 -11.18891 -11.13453 -11.02319 -10.67488 -10.60609 -10.31700 -10.15130 -9.69571 -9.24864 -9.13916 -9.03451 -8.66094 -8.34732 -6.18186 -4.26024 0.51088 0.89877 1.08998 2.24432 3.21092 3.28450 3.31484 3.39790 3.72479 3.85736 4.24750 4.31124 4.32645 4.40356 4.61609 4.69905 4.77472 4.95849 5.13770 5.14338 5.16532 5.25072 5.30003 5.47305 5.49925 5.62141 5.77472 5.82766 5.84421 6.05904 6.12839 6.22033 6.28085 6.74218 6.78956 7.01125 7.05318 7.38456 7.53909 7.66600 7.77215 7.99234 8.22972 8.77377 9.40609 10.87394 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.005092 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.258966 B = 5497.086527 C = 6680.714492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.274 3.726 3 H 0.040 0.960 4 C -0.526 4.526 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.098 6.098 13 S 2.689 3.311 14 O -0.960 6.960 15 O -0.979 6.979 16 C -0.682 4.682 17 C 0.023 3.977 18 C -0.154 4.154 19 C 0.014 3.986 20 C -0.198 4.198 21 C 0.042 3.958 22 C 0.401 3.599 23 O -0.451 6.451 24 C -0.163 4.163 25 C -0.115 4.115 26 C -0.094 4.094 27 H 0.092 0.908 28 H 0.026 0.974 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.411 0.589 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.844 7.928 -6.484 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.170 3.830 3 H 0.058 0.942 4 C -0.565 4.565 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.860 5.860 13 S 2.777 3.223 14 O -0.950 6.950 15 O -0.969 6.969 16 C -0.767 4.767 17 C 0.004 3.996 18 C -0.173 4.173 19 C 0.013 3.987 20 C -0.200 4.200 21 C 0.023 3.977 22 C 0.278 3.722 23 O -0.326 6.326 24 C -0.201 4.201 25 C -0.153 4.153 26 C -0.130 4.130 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.245 0.755 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.447 7.622 -7.263 15.553 hybrid contribution 0.805 -0.439 1.515 1.771 sum 12.252 7.182 -5.748 15.321 Atomic orbital electron populations 1.22241 0.97942 1.00091 1.01525 1.18550 0.91526 0.92058 0.80854 0.94213 1.21299 1.31940 1.13279 0.89993 0.91749 1.24898 0.94800 0.95022 0.99029 1.69876 1.36039 1.22627 1.23929 0.86491 0.78532 0.80124 0.82254 1.20664 1.21041 1.19759 1.55562 1.80606 1.18532 1.31258 1.01946 0.73747 0.73499 0.73138 1.93568 1.50192 1.67051 1.84227 1.93536 1.82433 1.61535 1.59417 1.31254 1.16753 1.11286 1.17371 1.21202 1.00567 0.90784 0.87022 1.21201 0.91583 1.01114 1.03379 1.20286 0.95229 0.92269 0.90867 1.20290 0.95135 0.95998 1.08539 1.21103 0.90038 0.98345 0.88204 1.22691 0.89554 0.88645 0.71292 1.90550 1.87141 1.19174 1.35718 1.22315 0.98340 0.98580 1.00841 1.21521 0.97580 0.98415 0.97769 1.20619 0.92195 0.97158 1.03067 0.88942 0.95510 0.94804 0.92565 0.75506 0.83494 0.84459 0.83478 0.87966 0.88662 0.89910 0.90807 0.89133 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.29 37.16 0.35 -3.38 16 2 C 0.27 6.44 2.76 -69.08 -0.19 6.25 16 3 H 0.04 0.96 7.23 -51.92 -0.38 0.59 16 4 C -0.53 -13.42 8.76 -34.44 -0.30 -13.72 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.58 11.32 55.43 0.63 -22.96 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -1.10 -22.11 5.46 -5.88 -0.03 -22.15 16 13 S 2.69 51.05 5.65 -107.50 -0.61 50.44 16 14 O -0.96 -19.98 16.54 -57.17 -0.95 -20.92 16 15 O -0.98 -19.70 17.28 -57.17 -0.99 -20.69 16 16 C -0.68 -11.86 5.81 -39.64 -0.23 -12.09 16 17 C 0.02 0.37 8.89 -39.51 -0.35 0.02 16 18 C -0.15 -2.01 9.65 -39.55 -0.38 -2.39 16 19 C 0.01 0.17 5.78 -104.23 -0.60 -0.43 16 20 C -0.20 -2.89 5.82 -105.00 -0.61 -3.50 16 21 C 0.04 0.71 9.08 -39.12 -0.36 0.36 16 22 C 0.40 5.43 6.89 -30.12 -0.21 5.22 16 23 O -0.45 -7.57 17.26 5.58 0.10 -7.48 16 24 C -0.16 -1.42 6.18 -27.28 -0.17 -1.59 16 25 C -0.12 -0.86 5.90 -26.69 -0.16 -1.02 16 26 C -0.09 -0.75 5.70 -28.21 -0.16 -0.91 16 27 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 28 H 0.03 0.59 7.64 -51.92 -0.40 0.19 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.41 7.59 8.83 -34.47 -0.30 7.28 16 32 H 0.15 2.26 7.61 -52.49 -0.40 1.86 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.15 2.49 7.28 -52.48 -0.38 2.10 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -32.24 345.99 -10.22 -42.46 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.10 Total: 6.40 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -3.47 Total: -25.59 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.60 Total: -45.10 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -1.84 Total: -49.08 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 51.05 SS G_CDS: -0.61 Total: 50.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.24 -10.22 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289844195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.340 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds