Wall clock time and date at job start Tue Mar 31 2020 14:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99899 * 2 1 4 4 N 1.46501 * 109.47139 * 125.15070 * 3 2 1 5 5 C 1.46495 * 120.00254 * 94.77791 * 4 3 2 6 6 C 1.50695 * 109.47136 * 79.50506 * 5 4 3 7 7 H 1.08005 * 119.99961 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00482 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00449 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99762 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47215 * 89.99651 * 10 8 6 12 12 H 1.48503 * 109.47252 * 210.00004 * 10 8 6 13 13 H 1.48499 * 109.47005 * 329.99950 * 10 8 6 14 14 C 1.34780 * 119.99621 * 274.78294 * 4 3 2 15 15 O 1.21551 * 119.99979 * 1.62951 * 14 4 3 16 16 C 1.47847 * 119.99816 * 181.63621 * 14 4 3 17 17 C 1.39593 * 120.14472 * 22.90212 * 16 14 4 18 18 C 1.37935 * 119.85362 * 179.79399 * 17 16 14 19 19 C 1.38383 * 120.14540 * 0.48812 * 18 17 16 20 20 C 1.38338 * 120.29005 * 359.74098 * 19 18 17 21 21 S 1.76205 * 119.92936 * 180.02562 * 20 19 18 22 22 C 1.81401 * 104.44863 * 270.02577 * 21 20 19 23 23 O 1.42101 * 104.27706 * 26.09204 * 21 20 19 24 24 O 1.42102 * 104.27745 * 153.95386 * 21 20 19 25 25 C 1.37979 * 120.14786 * 0.02739 * 20 19 18 26 26 H 1.08006 * 119.99692 * 185.02636 * 1 2 3 27 27 H 1.07999 * 119.99700 * 5.01730 * 1 2 3 28 28 H 1.08004 * 119.99750 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46866 * 245.14400 * 3 2 1 30 30 H 1.08993 * 109.47317 * 5.14827 * 3 2 1 31 31 H 1.09004 * 109.47250 * 199.50006 * 5 4 3 32 32 H 1.09000 * 109.47394 * 319.50525 * 5 4 3 33 33 H 0.96999 * 119.99828 * 180.02562 * 9 8 6 34 34 H 1.08001 * 120.07395 * 0.02562 * 17 16 14 35 35 H 1.07996 * 119.92915 * 180.20661 * 18 17 16 36 36 H 1.08001 * 119.86111 * 179.76770 * 19 18 17 37 37 H 1.08994 * 109.47353 * 59.99763 * 22 21 20 38 38 H 1.09002 * 109.46979 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46910 * 299.99453 * 22 21 20 40 40 H 1.08003 * 120.07778 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3304 1.1293 5 6 4.3903 0.9227 0.9374 6 6 5.1626 2.0539 0.3092 7 1 4.6648 2.9836 0.0758 8 6 6.5045 1.9019 0.0313 9 7 7.1784 2.8891 -0.5174 10 14 7.3654 0.2939 0.4342 11 1 7.2745 -0.6218 -0.7313 12 1 8.7930 0.5607 0.7440 13 1 6.7129 -0.3357 1.6103 14 6 2.5720 1.7288 2.3450 15 8 1.4085 2.0387 2.5111 16 6 3.5219 1.7889 3.4764 17 6 4.8917 1.9091 3.2360 18 6 5.7722 1.9689 4.2961 19 6 5.3011 1.9000 5.5955 20 6 3.9453 1.7761 5.8405 21 16 3.3558 1.6899 7.4988 22 6 3.3584 -0.0818 7.8885 23 8 4.3463 2.3689 8.2585 24 8 2.0249 2.1820 7.4236 25 6 3.0534 1.7199 4.7892 26 1 -0.5400 -0.9318 0.0820 27 1 -0.5399 0.9317 -0.0818 28 1 1.8500 -0.9354 -0.0004 29 1 2.6193 1.4037 -0.9325 30 1 1.3588 2.1315 0.0922 31 1 4.8320 0.6729 1.9021 32 1 4.4272 0.0508 0.2842 33 1 8.1224 2.7820 -0.7132 34 1 5.2610 1.9588 2.2223 35 1 6.8319 2.0652 4.1116 36 1 5.9950 1.9435 6.4220 37 1 4.3716 -0.4727 7.7959 38 1 3.0039 -0.2299 8.9086 39 1 2.7014 -0.6072 7.1953 40 1 1.9951 1.6228 4.9818 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292539806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:50 Heat of formation + Delta-G solvation = -19.351167 kcal Electronic energy + Delta-G solvation = -25389.931098 eV Core-core repulsion = 21685.491400 eV Total energy + Delta-G solvation = -3704.439698 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14365 -38.03624 -37.11916 -35.96279 -35.82667 -33.98893 -32.52414 -31.10046 -30.89109 -29.65401 -28.45582 -26.15048 -23.48550 -22.83964 -22.46608 -20.16539 -19.36959 -18.68013 -17.53204 -17.27769 -16.52966 -16.25736 -16.07267 -15.65433 -15.52472 -14.96436 -14.49433 -14.18535 -14.01533 -13.82780 -13.54110 -13.36870 -13.30309 -13.09210 -12.82167 -12.70131 -12.45294 -12.10896 -12.02922 -11.67009 -11.47792 -11.34913 -11.18024 -11.12779 -10.98142 -10.78045 -10.46185 -10.12651 -9.90900 -9.49742 -9.12166 -9.05461 -8.87676 -8.75775 -7.97931 -6.51574 -4.56461 0.01167 0.96966 1.27433 2.44932 2.82518 2.97888 3.05568 3.09100 3.14125 3.73022 3.76249 3.99577 4.06653 4.07320 4.58279 4.72962 4.75664 4.93364 5.06829 5.20604 5.24915 5.42894 5.44594 5.57007 5.66208 5.76668 5.93061 6.04669 6.07064 6.14033 6.16532 6.23226 6.46175 6.61815 6.70990 6.82625 6.95611 7.05024 7.06342 7.21426 7.85792 8.16090 8.57049 8.71109 9.03675 10.58939 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.004992 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.897144 B = 5607.680388 C = 7357.357869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.165 4.165 3 C 0.146 3.854 4 N -0.579 5.579 5 C 0.179 3.821 6 C -0.552 4.552 7 H 0.086 0.914 8 C 0.083 3.917 9 N -0.870 5.870 10 Si 0.862 3.138 11 H -0.268 1.268 12 H -0.277 1.277 13 H -0.259 1.259 14 C 0.558 3.442 15 O -0.555 6.555 16 C -0.154 4.154 17 C -0.055 4.055 18 C -0.157 4.157 19 C -0.009 4.009 20 C -0.685 4.685 21 S 2.504 3.496 22 C -0.652 4.652 23 O -0.942 6.942 24 O -0.937 6.937 25 C 0.027 3.973 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.272 0.728 34 H 0.213 0.787 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 -8.874 10.278 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.184 4.184 3 C 0.024 3.976 4 N -0.308 5.308 5 C 0.058 3.942 6 C -0.590 4.590 7 H 0.104 0.896 8 C -0.124 4.124 9 N -0.505 5.505 10 Si 0.687 3.313 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.183 1.183 14 C 0.347 3.653 15 O -0.435 6.435 16 C -0.158 4.158 17 C -0.072 4.072 18 C -0.176 4.176 19 C -0.028 4.028 20 C -0.773 4.773 21 S 2.684 3.316 22 C -0.801 4.801 23 O -0.939 6.939 24 O -0.935 6.935 25 C 0.007 3.993 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.228 0.772 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.396 -7.957 10.774 14.097 hybrid contribution 1.045 -1.446 -0.610 1.886 sum -3.351 -9.404 10.164 14.247 Atomic orbital electron populations 1.23747 0.95820 1.01535 1.00756 1.23345 0.96206 0.99117 0.99713 1.20423 0.92203 0.94938 0.90041 1.47714 1.11688 1.63709 1.07687 1.20719 0.78336 0.96580 0.98556 1.21333 0.94615 1.01140 1.41874 0.89555 1.24959 0.97197 0.96449 0.93822 1.69878 1.09614 1.31472 1.39552 0.87051 0.79958 0.84102 0.80174 1.19313 1.20217 1.18313 1.18166 0.86997 0.77331 0.82780 1.90709 1.18167 1.50639 1.83981 1.20092 0.94501 1.07593 0.93566 1.24315 0.92293 0.84869 1.05715 1.21400 1.00862 1.03142 0.92152 1.21091 0.93089 0.90431 0.98215 1.30233 1.02567 1.22485 1.21992 1.04978 0.74613 0.77566 0.74452 1.30244 1.12046 1.25904 1.11954 1.93567 1.60589 1.70244 1.69498 1.93593 1.36612 1.77213 1.86047 1.20933 0.99349 0.88413 0.90621 0.88922 0.88516 0.87689 0.88810 0.90283 0.92510 0.95143 0.91722 0.77161 0.84738 0.84374 0.85024 0.85272 0.84947 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 14.31 29.01 0.42 -2.09 16 2 C -0.16 -2.54 9.81 -36.03 -0.35 -2.89 16 3 C 0.15 2.60 5.77 -5.19 -0.03 2.57 16 4 N -0.58 -11.54 2.47 -177.56 -0.44 -11.98 16 5 C 0.18 3.67 3.68 -5.20 -0.02 3.65 16 6 C -0.55 -13.17 7.88 -34.44 -0.27 -13.45 16 7 H 0.09 2.34 8.06 -52.48 -0.42 1.91 16 8 C 0.08 2.02 5.32 -17.82 -0.09 1.92 16 9 N -0.87 -23.05 13.96 55.43 0.77 -22.28 16 10 Si 0.86 17.68 27.33 -169.99 -4.65 13.03 16 11 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.26 -4.92 6.54 56.52 0.37 -4.55 16 14 C 0.56 11.62 7.49 -12.33 -0.09 11.52 16 15 O -0.55 -12.45 16.25 5.32 0.09 -12.36 16 16 C -0.15 -2.95 5.62 -104.97 -0.59 -3.54 16 17 C -0.06 -1.05 7.53 -39.19 -0.30 -1.34 16 18 C -0.16 -2.52 10.03 -39.64 -0.40 -2.91 16 19 C -0.01 -0.13 9.47 -39.49 -0.37 -0.50 16 20 C -0.69 -9.81 5.65 -39.64 -0.22 -10.04 16 21 S 2.50 28.93 5.80 -107.50 -0.62 28.31 16 22 C -0.65 -4.41 10.80 101.05 1.09 -3.32 16 23 O -0.94 -13.15 17.12 -57.54 -0.98 -14.13 16 24 O -0.94 -14.10 17.12 -57.54 -0.98 -15.09 16 25 C 0.03 0.45 9.01 -39.18 -0.35 0.10 16 26 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 27 H 0.10 1.33 7.86 -52.49 -0.41 0.92 16 28 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.09 1.63 8.04 -51.93 -0.42 1.21 16 30 H 0.08 1.43 7.26 -51.93 -0.38 1.05 16 31 H 0.06 1.15 3.28 -51.94 -0.17 0.97 16 32 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.21 4.41 2.38 -52.49 -0.12 4.28 16 35 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.14 1.54 7.56 -52.49 -0.40 1.14 16 37 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.15 2.36 7.33 -52.48 -0.38 1.98 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -32.39 349.39 -7.94 -40.34 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.80 Total: 9.22 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -1.59 Total: -20.32 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.34 Total: -34.26 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.88 Total: -41.59 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -4.65 Total: 13.03 kcal Atomic # 16 Polarization: 28.93 SS G_CDS: -0.62 Total: 28.31 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.39 -7.94 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292539806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.986 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds