Wall clock time and date at job start Tue Mar 31 2020 13:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47073 * 223.89105 * 3 2 1 5 5 C 1.35897 * 116.99869 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05227 * 180.02562 * 5 4 3 7 7 C 1.38141 * 119.94391 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05384 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94399 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47064 * 89.99918 * 9 8 7 11 11 S 1.65596 * 119.99941 * 164.99860 * 10 9 8 12 12 O 1.42097 * 104.27711 * 181.07266 * 11 10 9 13 13 O 1.42100 * 104.27686 * 308.93150 * 11 10 9 14 14 C 1.81406 * 104.44797 * 65.00238 * 11 10 9 15 15 C 1.52999 * 109.47078 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.47373 * 180.02562 * 15 14 11 17 17 H 1.08007 * 119.99502 * 359.97438 * 16 15 14 18 18 C 1.37865 * 120.00347 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00193 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46747 * 89.99976 * 20 18 16 22 22 H 1.48498 * 109.47207 * 209.99939 * 20 18 16 23 23 H 1.48502 * 109.46794 * 330.00170 * 20 18 16 24 24 C 1.38270 * 120.11265 * 0.25255 * 8 7 6 25 25 C 1.38141 * 120.05541 * 359.45293 * 24 8 7 26 26 H 4.38451 * 5.44478 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.46850 * 103.89790 * 3 2 1 28 28 H 1.08994 * 109.47442 * 343.89256 * 3 2 1 29 29 H 1.07996 * 120.02821 * 359.97438 * 6 5 4 30 30 H 1.07993 * 119.97516 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47152 * 330.00001 * 9 8 7 32 32 H 1.09001 * 109.46980 * 210.00101 * 9 8 7 33 33 H 0.96997 * 119.99914 * 345.00740 * 10 9 8 34 34 H 1.08999 * 109.47047 * 299.99963 * 14 11 10 35 35 H 1.08991 * 109.46984 * 59.99873 * 14 11 10 36 36 H 1.09004 * 109.46523 * 299.99464 * 15 14 11 37 37 H 1.08996 * 109.47442 * 59.99434 * 15 14 11 38 38 H 0.97001 * 120.00561 * 179.97438 * 19 18 16 39 39 H 1.07999 * 119.97019 * 179.70188 * 24 8 7 40 40 H 1.07998 * 120.03323 * 180.24999 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1219 0.9718 0.9341 5 6 4.4691 1.1011 1.0571 6 6 5.0001 2.0246 1.9460 7 6 6.3699 2.1545 2.0689 8 6 7.2115 1.3655 1.3066 9 6 8.7054 1.5097 1.4422 10 7 9.1918 0.5979 2.4807 11 16 10.8093 0.2631 2.5972 12 8 10.8999 -0.6564 3.6768 13 8 11.1849 -0.1144 1.2798 14 6 11.5685 1.8484 3.0459 15 6 13.0815 1.6683 3.1844 16 6 13.7122 2.9850 3.5577 17 1 13.0954 3.8628 3.6832 18 6 15.0762 3.0693 3.7390 19 7 15.8272 2.0005 3.5867 20 14 15.8580 4.7018 4.2011 21 1 15.9038 4.8275 5.6801 22 1 17.2382 4.7615 3.6563 23 1 15.0535 5.8139 3.6344 24 6 6.6847 0.4485 0.4158 25 6 5.3156 0.3105 0.2936 26 1 -1.0502 -0.0003 -0.0001 27 1 3.0091 0.2477 -0.9976 28 1 3.0098 -0.9864 0.2851 29 1 4.3432 2.6419 2.5407 30 1 6.7838 2.8728 2.7609 31 1 8.9479 2.5362 1.7173 32 1 9.1817 1.2660 0.4925 33 1 8.5662 0.1903 3.0999 34 1 11.3601 2.5839 2.2689 35 1 11.1551 2.1939 3.9934 36 1 13.2902 0.9327 3.9613 37 1 13.4945 1.3229 2.2367 38 1 16.7870 2.0598 3.7138 39 1 7.3441 -0.1632 -0.1819 40 1 4.9045 -0.4087 -0.3993 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296200721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:38 Heat of formation + Delta-G solvation = -36.525956 kcal Electronic energy + Delta-G solvation = -23339.052342 eV Core-core repulsion = 19633.867889 eV Total energy + Delta-G solvation = -3705.184453 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58080 -38.35661 -36.57146 -35.45419 -35.06023 -33.88665 -33.84069 -31.38689 -31.15483 -30.44981 -28.09200 -25.59641 -25.32816 -23.12058 -21.72044 -21.52967 -18.97716 -18.93381 -18.67620 -17.52249 -16.79105 -16.49312 -16.41987 -16.14821 -15.43766 -15.25179 -14.78810 -14.63764 -14.53917 -14.34983 -13.88654 -13.44503 -13.35867 -13.18317 -12.82755 -12.49842 -12.35068 -11.79023 -11.73087 -11.58196 -11.50393 -11.45349 -11.22988 -11.07922 -10.97349 -10.95490 -10.67124 -10.41872 -10.37726 -9.80069 -9.49652 -9.30182 -9.02439 -8.50081 -8.48908 -6.12184 -4.17787 0.72813 1.04474 1.12197 1.78729 2.22616 3.13041 3.14255 3.26267 3.32586 3.35102 3.54500 3.85345 4.25280 4.37902 4.42323 4.49960 4.54842 4.65003 4.71669 4.76278 5.01522 5.08178 5.23054 5.24217 5.31089 5.37223 5.45626 5.64819 5.68301 5.75445 5.88982 5.96813 6.04883 6.35813 6.41982 6.49704 6.95484 7.00322 7.10590 7.30830 7.37076 7.80718 8.17862 8.85644 9.47057 10.98780 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.002074 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.675147 B =13499.214061 C =14071.634218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.202 4.202 3 C 0.172 3.828 4 O -0.312 6.312 5 C 0.130 3.870 6 C -0.151 4.151 7 C -0.062 4.062 8 C -0.129 4.129 9 C 0.159 3.841 10 N -1.125 6.125 11 S 2.594 3.406 12 O -0.967 6.967 13 O -0.967 6.967 14 C -0.589 4.589 15 C 0.027 3.973 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.059 4.059 25 C -0.211 4.211 26 H 0.225 0.775 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.413 0.587 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.409 -1.772 -7.235 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.202 4.202 3 C 0.098 3.902 4 O -0.226 6.226 5 C 0.085 3.915 6 C -0.169 4.169 7 C -0.081 4.081 8 C -0.131 4.131 9 C 0.033 3.967 10 N -0.882 5.882 11 S 2.691 3.309 12 O -0.958 6.958 13 O -0.957 6.957 14 C -0.723 4.723 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.077 4.077 25 C -0.230 4.230 26 H 0.242 0.758 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.246 0.754 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.857 -2.533 -7.439 27.983 hybrid contribution -0.055 1.190 0.510 1.296 sum -26.911 -1.343 -6.929 27.821 Atomic orbital electron populations 1.25053 0.95898 0.98192 0.98336 1.22276 0.93563 1.02200 1.02133 1.19273 0.84952 0.92598 0.93344 1.86101 1.19666 1.57210 1.59601 1.18995 0.81466 0.95460 0.95554 1.20424 0.95224 1.00442 1.00860 1.20971 0.91896 0.97845 0.97388 1.19798 0.95172 0.98927 0.99184 1.20129 0.90736 0.93682 0.92137 1.55892 1.27171 1.61454 1.43669 1.05525 0.72779 0.78108 0.74455 1.93554 1.84916 1.60858 1.56429 1.93535 1.81706 1.81829 1.38654 1.30442 1.11988 1.19093 1.10761 1.18967 0.83651 0.99716 0.98862 1.21007 0.92203 0.94482 1.48312 0.92043 1.25063 0.97336 0.96904 0.95168 1.69953 1.05693 1.28463 1.48711 0.86473 0.78638 0.83465 0.78713 1.20492 1.21024 1.19782 1.20974 0.94239 0.96067 0.96462 1.21241 0.94351 1.03445 1.03926 0.75819 0.89383 0.89375 0.85006 0.84689 0.90769 0.89387 0.75368 0.86307 0.86084 0.94833 0.94788 0.92544 0.85063 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 19.25 29.55 0.57 -0.40 16 2 C -0.20 -1.57 13.73 -37.13 -0.51 -2.08 16 3 C 0.17 1.19 5.21 34.37 0.18 1.37 16 4 O -0.31 -2.97 10.09 -19.42 -0.20 -3.17 16 5 C 0.13 1.22 6.69 -39.21 -0.26 0.96 16 6 C -0.15 -1.37 9.99 -39.43 -0.39 -1.76 16 7 C -0.06 -0.55 9.69 -39.61 -0.38 -0.93 16 8 C -0.13 -1.25 5.28 -104.60 -0.55 -1.80 16 9 C 0.16 1.68 6.26 -5.19 -0.03 1.65 16 10 N -1.12 -13.84 5.88 -11.65 -0.07 -13.91 16 11 S 2.59 44.46 5.46 -107.50 -0.59 43.87 16 12 O -0.97 -19.70 18.08 -57.54 -1.04 -20.74 16 13 O -0.97 -19.34 17.50 -57.54 -1.01 -20.34 16 14 C -0.59 -10.83 6.01 37.16 0.22 -10.61 16 15 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 16 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 20 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.06 -0.55 9.69 -39.60 -0.38 -0.93 16 25 C -0.21 -1.79 9.04 -39.43 -0.36 -2.14 16 26 H 0.23 0.52 7.80 -54.08 -0.42 0.10 16 27 H 0.09 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.09 0.47 7.67 -51.93 -0.40 0.07 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.09 0.95 7.63 -51.93 -0.40 0.56 16 33 H 0.41 4.49 8.61 -34.47 -0.30 4.19 16 34 H 0.12 1.92 8.14 -51.92 -0.42 1.49 16 35 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -36.53 368.08 -9.25 -45.78 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.16 Total: 1.67 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -2.45 Total: -29.17 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.67 Total: -39.51 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -2.24 Total: -44.25 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 44.46 SS G_CDS: -0.59 Total: 43.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.53 -9.25 -45.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296200721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.259 kcal (2) G-P(sol) polarization free energy of solvation -36.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds