Wall clock time and date at job start Tue Mar 31 2020 13:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99514 * 2 1 4 4 N 1.46497 * 109.47172 * 124.99762 * 3 2 1 5 5 C 1.46500 * 120.00364 * 274.99783 * 4 3 2 6 6 C 1.50703 * 109.47135 * 275.00242 * 5 4 3 7 7 H 1.07990 * 119.99977 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99702 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99844 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00058 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47436 * 89.99707 * 10 8 6 12 12 H 1.48497 * 109.47130 * 209.99658 * 10 8 6 13 13 H 1.48500 * 109.47252 * 329.99698 * 10 8 6 14 14 S 1.65600 * 119.99876 * 94.99869 * 4 3 2 15 15 O 1.42101 * 106.40248 * 156.46203 * 14 4 3 16 16 O 1.42104 * 106.40432 * 23.54296 * 14 4 3 17 17 C 1.76197 * 107.22020 * 269.99968 * 14 4 3 18 18 C 1.38402 * 119.82863 * 270.27958 * 17 14 4 19 19 C 1.37885 * 120.17407 * 180.28094 * 18 17 14 20 20 C 1.39851 * 119.82281 * 359.43610 * 19 18 17 21 21 C 1.47168 * 120.17582 * 180.29957 * 20 19 18 22 22 C 1.50698 * 120.00520 * 180.02562 * 21 20 19 23 23 O 1.21262 * 119.99476 * 0.02562 * 21 20 19 24 24 C 1.39853 * 119.65985 * 0.28751 * 20 19 18 25 25 C 1.37892 * 119.82327 * 359.97438 * 24 20 19 26 26 H 1.08008 * 119.99669 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00841 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00380 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47559 * 4.99664 * 3 2 1 30 30 H 1.09009 * 109.47205 * 244.99878 * 3 2 1 31 31 H 1.08999 * 109.46820 * 35.00092 * 5 4 3 32 32 H 1.08995 * 109.47432 * 154.99632 * 5 4 3 33 33 H 0.96998 * 120.00307 * 179.97438 * 9 8 6 34 34 H 1.07998 * 119.91183 * 359.97438 * 18 17 14 35 35 H 1.08002 * 120.09199 * 179.72215 * 19 18 17 36 36 H 1.08996 * 109.47011 * 0.02562 * 22 21 20 37 37 H 1.09004 * 109.46978 * 120.00096 * 22 21 20 38 38 H 1.08999 * 109.47274 * 240.00450 * 22 21 20 39 39 H 1.08001 * 120.09350 * 180.02562 * 24 20 19 40 40 H 1.08000 * 119.91347 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 2.5283 1.7623 2.4523 6 6 2.5988 3.2648 2.5449 7 1 2.9550 3.8415 1.7042 8 6 2.2085 3.9032 3.7030 9 7 2.2706 5.2143 3.7841 10 14 1.5931 2.9055 5.1575 11 1 2.7380 2.5500 6.0339 12 1 0.6105 3.7088 5.9284 13 1 0.9416 1.6647 4.6665 14 16 4.5711 0.8762 0.9174 15 8 5.3145 1.5049 1.9524 16 8 4.8566 1.0547 -0.4632 17 6 4.6594 -0.8567 1.2236 18 6 4.9082 -1.3176 2.5048 19 6 4.9845 -2.6721 2.7514 20 6 4.7981 -3.5811 1.7051 21 6 4.8714 -5.0286 1.9609 22 6 4.6705 -6.0047 0.8305 23 8 5.0934 -5.4357 3.0813 24 6 4.5415 -3.1077 0.4144 25 6 4.4735 -1.7500 0.1829 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5402 0.9353 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3584 2.1317 0.0895 30 1 2.6212 1.4027 -0.9314 31 1 1.4982 1.4372 2.5982 32 1 3.1610 1.3207 3.2221 33 1 1.9957 5.6634 4.5987 34 1 5.0477 -0.6144 3.3124 35 1 5.1831 -3.0301 3.7508 36 1 4.4844 -5.4573 -0.0934 37 1 5.5651 -6.6169 0.7158 38 1 3.8173 -6.6460 1.0515 39 1 4.3960 -3.8035 -0.3986 40 1 4.2758 -1.3828 -0.8133 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298778919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:08 Heat of formation + Delta-G solvation = -51.086971 kcal Electronic energy + Delta-G solvation = -25314.736071 eV Core-core repulsion = 21608.920206 eV Total energy + Delta-G solvation = -3705.815866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.30925 -38.42844 -36.91442 -36.56244 -35.38429 -33.27161 -32.54602 -32.03578 -31.37221 -29.72203 -28.15368 -25.11511 -24.49745 -22.91005 -21.98440 -20.35195 -19.95113 -18.79821 -17.85068 -17.01058 -16.96249 -16.41032 -16.26777 -15.70544 -15.38206 -15.08537 -14.77166 -14.33462 -14.21643 -13.97387 -13.86628 -13.30871 -13.20830 -13.18940 -12.63569 -12.57667 -12.48385 -12.23268 -11.97388 -11.64846 -11.61848 -11.44177 -11.38629 -11.08936 -10.84731 -10.74601 -10.46364 -10.28349 -10.11816 -9.64868 -9.55486 -9.29979 -9.26755 -8.62913 -8.26738 -6.11824 -4.11718 -0.00616 0.77578 1.06735 1.89553 2.39569 3.22856 3.25949 3.30346 3.33021 3.57436 3.63424 4.15189 4.29549 4.35145 4.54443 4.59972 4.72210 4.98572 5.00386 5.06215 5.09911 5.18142 5.23002 5.29737 5.37712 5.46460 5.48457 5.69523 5.79331 5.91040 5.97712 5.98271 6.11776 6.28157 6.52062 6.66477 6.72904 6.82450 7.01026 7.08311 7.26284 7.52356 8.43994 8.92747 9.46852 11.01496 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013804 B = 0.004378 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.857010 B = 6393.809804 C = 6835.325644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.175 4.175 3 C 0.143 3.857 4 N -0.969 5.969 5 C 0.226 3.774 6 C -0.533 4.533 7 H 0.080 0.920 8 C 0.076 3.924 9 N -0.893 5.893 10 Si 0.867 3.133 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.264 1.264 14 S 2.680 3.320 15 O -0.933 6.933 16 O -0.966 6.966 17 C -0.645 4.645 18 C -0.030 4.030 19 C -0.083 4.083 20 C -0.129 4.129 21 C 0.393 3.607 22 C -0.202 4.202 23 O -0.452 6.452 24 C -0.100 4.100 25 C -0.037 4.037 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.142 0.858 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 -19.719 -8.708 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.194 4.194 3 C 0.018 3.982 4 N -0.806 5.806 5 C 0.103 3.897 6 C -0.572 4.572 7 H 0.098 0.902 8 C -0.127 4.127 9 N -0.531 5.531 10 Si 0.694 3.306 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.189 1.189 14 S 2.767 3.233 15 O -0.923 6.923 16 O -0.956 6.956 17 C -0.728 4.728 18 C -0.049 4.049 19 C -0.102 4.102 20 C -0.130 4.130 21 C 0.271 3.729 22 C -0.259 4.259 23 O -0.327 6.327 24 C -0.118 4.118 25 C -0.056 4.056 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.159 0.841 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.359 -19.258 -8.197 20.974 hybrid contribution -0.663 -1.124 1.054 1.678 sum 0.696 -20.383 -7.144 21.609 Atomic orbital electron populations 1.23831 0.95810 1.01825 1.00231 1.23505 0.96712 0.99041 1.00186 1.20453 0.93357 0.95612 0.88804 1.57188 1.27244 1.78510 1.17708 1.19515 0.95812 0.96741 0.77646 1.21333 1.44528 0.89455 1.01878 0.90188 1.24830 0.95010 0.94769 0.98095 1.69880 1.47533 1.07723 1.27947 0.86991 0.79414 0.80715 0.83498 1.19703 1.20885 1.18866 1.02526 0.73633 0.73382 0.73728 1.93629 1.68830 1.72078 1.57807 1.93519 1.83657 1.85237 1.33184 1.31907 1.11635 1.28741 1.00536 1.21061 0.92112 0.96252 0.95428 1.21561 0.96559 0.92657 0.99426 1.20817 1.02113 0.95169 0.94949 1.22612 0.71604 0.89019 0.89678 1.22253 1.04971 1.00019 0.98653 1.90557 1.35270 1.81356 1.25542 1.21591 0.98426 0.95925 0.95900 1.20940 0.93514 0.92731 0.98398 0.88898 0.88022 0.87969 0.88388 0.88935 0.94448 0.95237 0.92447 0.83299 0.84084 0.89532 0.88519 0.88504 0.84062 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.02 0.42 -1.73 16 2 C -0.17 -2.30 9.84 -36.03 -0.35 -2.65 16 3 C 0.14 2.27 6.12 -5.20 -0.03 2.24 16 4 N -0.97 -18.41 2.75 -116.95 -0.32 -18.73 16 5 C 0.23 5.06 4.17 -5.19 -0.02 5.04 16 6 C -0.53 -14.58 9.94 -34.44 -0.34 -14.92 16 7 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 8 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.89 -26.82 13.96 55.43 0.77 -26.04 16 10 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 14 S 2.68 49.53 5.64 -107.50 -0.61 48.92 16 15 O -0.93 -20.78 16.24 -57.17 -0.93 -21.71 16 16 O -0.97 -18.24 15.82 -57.17 -0.90 -19.14 16 17 C -0.65 -9.51 5.98 -39.46 -0.24 -9.74 16 18 C -0.03 -0.42 9.50 -39.65 -0.38 -0.80 16 19 C -0.08 -1.06 9.60 -39.11 -0.38 -1.43 16 20 C -0.13 -1.43 5.87 -105.06 -0.62 -2.05 16 21 C 0.39 3.96 7.23 -30.69 -0.22 3.74 16 22 C -0.20 -1.16 10.19 36.00 0.37 -0.80 16 23 O -0.45 -6.06 17.09 5.57 0.10 -5.96 16 24 C -0.10 -0.96 9.45 -39.10 -0.37 -1.33 16 25 C -0.04 -0.44 8.86 -39.64 -0.35 -0.79 16 26 H 0.09 0.94 8.06 -52.48 -0.42 0.52 16 27 H 0.10 1.21 7.84 -52.48 -0.41 0.80 16 28 H 0.10 1.20 7.40 -52.49 -0.39 0.81 16 29 H 0.10 1.61 7.76 -51.93 -0.40 1.21 16 30 H 0.09 1.36 6.92 -51.92 -0.36 1.00 16 31 H 0.04 0.81 7.17 -51.93 -0.37 0.43 16 32 H 0.03 0.66 7.04 -51.93 -0.37 0.29 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.15 2.12 7.61 -52.49 -0.40 1.72 16 35 H 0.14 1.66 7.65 -52.49 -0.40 1.26 16 36 H 0.09 0.33 5.61 -51.93 -0.29 0.04 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.14 0.80 5.93 -52.49 -0.31 0.49 16 40 H 0.15 1.48 7.60 -52.49 -0.40 1.08 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -34.69 355.47 -8.78 -43.47 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.96 Total: 1.13 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.61 Total: -23.17 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.45 Total: -44.78 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -1.74 Total: -46.81 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 49.53 SS G_CDS: -0.61 Total: 48.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.69 -8.78 -43.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298778919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.616 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds