Wall clock time and date at job start Tue Mar 31 2020 14:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34779 * 119.99998 * 2 1 4 4 O 1.21552 * 120.00099 * 174.73294 * 3 2 1 5 5 C 1.47861 * 119.99832 * 354.73962 * 3 2 1 6 6 C 1.39673 * 120.10349 * 329.47796 * 5 3 2 7 7 C 1.38034 * 120.04185 * 180.02562 * 6 5 3 8 8 C 1.38182 * 120.24006 * 0.02562 * 7 6 5 9 9 C 1.39173 * 120.20542 * 0.02562 * 8 7 6 10 10 S 1.76205 * 120.02372 * 179.97438 * 9 8 7 11 11 C 1.76197 * 99.99929 * 85.08166 * 10 9 8 12 12 H 1.07995 * 120.00157 * 5.02454 * 11 10 9 13 13 C 1.38733 * 119.99907 * 185.01893 * 11 10 9 14 14 N 1.31621 * 119.99775 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99975 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47081 * 60.00097 * 15 13 11 17 17 H 1.48500 * 109.47030 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47159 * 300.00235 * 15 13 11 19 19 C 1.38874 * 119.95960 * 0.24700 * 9 8 7 20 20 C 1.46498 * 120.00172 * 180.02562 * 2 1 3 21 21 H 1.08995 * 110.46157 * 182.60321 * 20 2 1 22 22 C 1.54482 * 110.51070 * 305.36025 * 20 2 1 23 23 O 1.44426 * 104.80454 * 94.66510 * 22 20 2 24 24 C 1.44419 * 105.27669 * 40.51206 * 23 22 20 25 25 C 1.54480 * 104.80389 * 319.49091 * 24 23 22 26 26 H 1.09003 * 110.51636 * 142.62327 * 25 24 23 27 27 O 1.42904 * 110.62538 * 265.27667 * 25 24 23 28 28 H 1.09000 * 109.47262 * 90.95824 * 1 2 3 29 29 H 1.09002 * 109.47454 * 210.95917 * 1 2 3 30 30 H 1.09003 * 109.47255 * 330.95679 * 1 2 3 31 31 H 1.08003 * 119.97607 * 0.02562 * 6 5 3 32 32 H 1.07991 * 119.88284 * 179.97438 * 7 6 5 33 33 H 1.08007 * 119.89416 * 179.97438 * 8 7 6 34 34 H 0.96999 * 119.99973 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.12198 * 179.72671 * 19 9 8 36 36 H 1.09004 * 110.36854 * 213.49286 * 22 20 2 37 37 H 1.08998 * 110.37210 * 335.82653 * 22 20 2 38 38 H 1.08999 * 110.37678 * 200.65735 * 24 23 22 39 39 H 1.09001 * 110.47155 * 78.36499 * 24 23 22 40 40 H 0.96696 * 114.00379 * 294.70959 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3505 1.1695 0.0966 5 6 1.4042 2.4450 -0.1174 6 6 0.2053 2.5007 -0.8318 7 6 -0.4793 3.6944 -0.9411 8 6 0.0172 4.8383 -0.3458 9 6 1.2114 4.7946 0.3675 10 16 1.8405 6.2564 1.1241 11 6 0.9570 6.2167 2.6480 12 1 0.3266 5.3724 2.8849 13 6 1.0713 7.2699 3.5437 14 7 1.8393 8.2991 3.2548 15 14 0.1352 7.2275 5.1596 16 1 0.5580 6.0408 5.9456 17 1 0.4249 8.4623 5.9320 18 1 -1.3221 7.1461 4.8856 19 6 1.9099 3.5994 0.4780 20 6 2.1975 -1.2687 -0.0006 21 1 3.2714 -1.0886 0.0459 22 6 1.7430 -2.1567 1.1790 23 8 0.7246 -3.0165 0.6227 24 6 1.2141 -3.3901 -0.6837 25 6 1.8415 -2.0989 -1.2542 26 1 2.7399 -2.3311 -1.8262 27 8 0.8987 -1.3979 -2.0678 28 1 -0.3634 -0.0172 -1.0275 29 1 -0.3634 -0.8813 0.5287 30 1 -0.3634 0.8985 0.4989 31 1 -0.1864 1.6092 -1.2991 32 1 -1.4058 3.7346 -1.4944 33 1 -0.5228 5.7694 -0.4352 34 1 1.9195 9.0353 3.8812 35 1 2.8392 3.5635 1.0272 36 1 2.5784 -2.7496 1.5514 37 1 1.3266 -1.5428 1.9776 38 1 0.3914 -3.7237 -1.3161 39 1 1.9679 -4.1728 -0.5989 40 1 0.6399 -1.8737 -2.8688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342436489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:37 Heat of formation + Delta-G solvation = -78.463406 kcal Electronic energy + Delta-G solvation = -24950.545285 eV Core-core repulsion = 21243.542288 eV Total energy + Delta-G solvation = -3707.002997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87133 -39.40950 -37.67074 -36.44278 -35.24834 -32.49639 -31.66808 -30.55633 -29.92072 -28.76489 -26.86372 -25.55611 -24.05318 -22.98540 -22.26859 -21.20216 -19.60595 -18.21057 -17.68151 -17.12731 -17.02412 -16.53772 -16.19269 -15.91453 -15.17192 -14.95159 -14.84148 -14.49420 -14.19941 -13.76257 -13.56787 -13.28955 -13.15143 -13.06769 -12.65571 -12.54030 -12.30499 -12.06885 -11.83680 -11.62106 -11.26444 -11.12675 -11.11691 -11.06401 -10.72474 -10.66721 -10.13332 -9.95404 -9.64941 -9.13749 -8.96739 -8.67606 -8.47530 -7.95030 -6.68997 -6.27075 -4.00772 1.28516 1.73038 2.81933 2.98490 3.21140 3.22287 3.26721 3.46498 3.49091 3.77529 4.07197 4.13379 4.26704 4.34924 4.48036 4.69266 4.86607 4.92849 5.06585 5.08756 5.12407 5.18153 5.28593 5.35213 5.39616 5.45368 5.50084 5.66097 5.80528 5.91160 5.94878 6.06006 6.24718 6.32085 6.43065 6.66091 6.73110 6.98357 7.19908 7.25721 7.38506 7.58137 8.24217 8.33541 9.18230 10.79591 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.003073 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.699679 B = 9110.831216 C = 9571.626590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.589 5.589 3 C 0.569 3.431 4 O -0.542 6.542 5 C -0.152 4.152 6 C -0.095 4.095 7 C -0.144 4.144 8 C -0.055 4.055 9 C -0.108 4.108 10 S -0.036 6.036 11 C -0.520 4.520 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.871 5.871 15 Si 0.921 3.079 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.023 4.023 20 C 0.116 3.884 21 H 0.122 0.878 22 C 0.033 3.967 23 O -0.366 6.366 24 C 0.015 3.985 25 C 0.060 3.940 26 H 0.078 0.922 27 O -0.541 6.541 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.270 0.730 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 -22.643 -10.150 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.322 5.322 3 C 0.359 3.641 4 O -0.420 6.420 5 C -0.156 4.156 6 C -0.113 4.113 7 C -0.164 4.164 8 C -0.077 4.077 9 C -0.218 4.218 10 S 0.199 5.801 11 C -0.668 4.668 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.506 5.506 15 Si 0.747 3.253 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.198 1.198 19 C -0.045 4.045 20 C 0.011 3.989 21 H 0.140 0.860 22 C -0.044 4.044 23 O -0.284 6.284 24 C -0.062 4.062 25 C -0.001 4.001 26 H 0.096 0.904 27 O -0.346 6.346 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.706 -21.252 -9.805 23.560 hybrid contribution -1.394 -1.370 0.805 2.114 sum -4.100 -22.621 -9.000 24.689 Atomic orbital electron populations 1.22223 0.78712 1.02883 1.02353 1.47295 1.07313 1.03965 1.73592 1.18554 0.86886 0.83560 0.75067 1.90738 1.13924 1.87201 1.50133 1.19729 0.97448 0.93234 1.05220 1.21709 0.93472 0.98597 0.97541 1.21093 1.00531 0.92833 1.01958 1.21983 0.94381 0.98204 0.93083 1.22776 0.97437 1.00577 1.01048 1.83626 1.56870 1.21386 1.18237 1.22796 1.33054 1.08453 1.02458 0.90714 1.24997 0.95451 0.94340 0.98787 1.69979 1.36381 1.07779 1.36468 0.86183 0.79892 0.77740 0.81532 1.19822 1.20753 1.19845 1.21825 0.98375 0.89891 0.94412 1.22523 0.99320 0.84350 0.92706 0.85996 1.23897 0.92141 0.91979 0.96399 1.89180 1.42204 1.67045 1.29967 1.24194 0.99763 0.96412 0.85875 1.23614 0.92235 0.91565 0.92653 0.90438 1.86697 1.62767 1.47326 1.37820 0.90902 0.91075 0.90739 0.84803 0.85960 0.85228 0.92021 0.84796 0.90687 0.87834 0.88443 0.91366 0.77778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 7.47 59.84 0.45 1.34 16 2 N -0.59 -7.65 2.41 -173.25 -0.42 -8.07 16 3 C 0.57 9.62 7.43 -12.32 -0.09 9.53 16 4 O -0.54 -10.72 16.09 5.32 0.09 -10.63 16 5 C -0.15 -2.67 5.31 -104.99 -0.56 -3.23 16 6 C -0.09 -1.41 7.61 -39.12 -0.30 -1.70 16 7 C -0.14 -2.20 10.02 -39.68 -0.40 -2.59 16 8 C -0.06 -1.04 9.79 -39.25 -0.38 -1.42 16 9 C -0.11 -2.36 5.45 -39.00 -0.21 -2.57 16 10 S -0.04 -0.94 21.41 -107.50 -2.30 -3.24 16 11 C -0.52 -14.73 9.46 30.92 0.29 -14.44 16 12 H 0.07 2.09 7.79 -52.49 -0.41 1.68 16 13 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 14 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 15 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C -0.02 -0.48 9.34 -38.92 -0.36 -0.85 16 20 C 0.12 1.22 3.53 -66.36 -0.23 0.99 16 21 H 0.12 1.40 6.98 -51.93 -0.36 1.04 16 22 C 0.03 0.31 6.48 37.94 0.25 0.55 16 23 O -0.37 -3.48 10.67 -35.23 -0.38 -3.85 16 24 C 0.01 0.10 7.38 37.93 0.28 0.38 16 25 C 0.06 0.45 4.38 -25.16 -0.11 0.34 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 O -0.54 -4.25 10.00 -35.23 -0.35 -4.60 16 28 H 0.07 0.75 5.18 -51.93 -0.27 0.48 16 29 H 0.07 0.75 6.27 -51.93 -0.33 0.42 16 30 H 0.07 0.89 5.83 -51.93 -0.30 0.59 16 31 H 0.13 1.62 4.90 -52.48 -0.26 1.36 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.13 2.36 8.06 -52.48 -0.42 1.94 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.13 2.92 7.92 -52.49 -0.42 2.50 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.03 7.95 -51.93 -0.41 0.62 16 38 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.37 1.27 9.12 45.56 0.42 1.68 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -34.54 342.72 -7.98 -42.51 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.01 Total: 2.89 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.48 Total: -11.72 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.32 Total: -32.90 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.64 Total: -19.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.30 Total: -3.24 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.54 -7.98 -42.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342436489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.951 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds