Wall clock time and date at job start Tue Mar 31 2020 14:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34779 * 119.99998 * 2 1 4 4 O 1.21552 * 120.00099 * 174.73294 * 3 2 1 5 5 C 1.47861 * 119.99832 * 354.73962 * 3 2 1 6 6 C 1.39673 * 120.10349 * 329.47796 * 5 3 2 7 7 C 1.38034 * 120.04185 * 180.02562 * 6 5 3 8 8 C 1.38182 * 120.24006 * 0.02562 * 7 6 5 9 9 C 1.39173 * 120.20542 * 0.02562 * 8 7 6 10 10 S 1.76205 * 120.02372 * 179.97438 * 9 8 7 11 11 C 1.76197 * 99.99929 * 85.08166 * 10 9 8 12 12 H 1.07995 * 120.00157 * 5.02454 * 11 10 9 13 13 C 1.38733 * 119.99907 * 185.01893 * 11 10 9 14 14 N 1.31621 * 119.99775 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99975 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47081 * 60.00097 * 15 13 11 17 17 H 1.48500 * 109.47030 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47159 * 300.00235 * 15 13 11 19 19 C 1.38874 * 119.95960 * 0.24700 * 9 8 7 20 20 C 1.46498 * 120.00172 * 180.02562 * 2 1 3 21 21 H 1.08995 * 110.46157 * 182.60321 * 20 2 1 22 22 C 1.54482 * 110.51070 * 305.36025 * 20 2 1 23 23 O 1.44426 * 104.80454 * 94.66510 * 22 20 2 24 24 C 1.44419 * 105.27669 * 40.51206 * 23 22 20 25 25 C 1.54480 * 104.80389 * 319.49091 * 24 23 22 26 26 H 1.09003 * 110.51636 * 142.62327 * 25 24 23 27 27 O 1.42904 * 110.62538 * 265.27667 * 25 24 23 28 28 H 1.09000 * 109.47262 * 90.95824 * 1 2 3 29 29 H 1.09002 * 109.47454 * 210.95917 * 1 2 3 30 30 H 1.09003 * 109.47255 * 330.95679 * 1 2 3 31 31 H 1.08003 * 119.97607 * 0.02562 * 6 5 3 32 32 H 1.07991 * 119.88284 * 179.97438 * 7 6 5 33 33 H 1.08007 * 119.89416 * 179.97438 * 8 7 6 34 34 H 0.96999 * 119.99973 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.12198 * 179.72671 * 19 9 8 36 36 H 1.09004 * 110.36854 * 213.49286 * 22 20 2 37 37 H 1.08998 * 110.37210 * 335.82653 * 22 20 2 38 38 H 1.08999 * 110.37678 * 200.65735 * 24 23 22 39 39 H 1.09001 * 110.47155 * 78.36499 * 24 23 22 40 40 H 0.96696 * 114.00379 * 294.70959 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3505 1.1695 0.0966 5 6 1.4042 2.4450 -0.1174 6 6 0.2053 2.5007 -0.8318 7 6 -0.4793 3.6944 -0.9411 8 6 0.0172 4.8383 -0.3458 9 6 1.2114 4.7946 0.3675 10 16 1.8405 6.2564 1.1241 11 6 0.9570 6.2167 2.6480 12 1 0.3266 5.3724 2.8849 13 6 1.0713 7.2699 3.5437 14 7 1.8393 8.2991 3.2548 15 14 0.1352 7.2275 5.1596 16 1 0.5580 6.0408 5.9456 17 1 0.4249 8.4623 5.9320 18 1 -1.3221 7.1461 4.8856 19 6 1.9099 3.5994 0.4780 20 6 2.1975 -1.2687 -0.0006 21 1 3.2714 -1.0886 0.0459 22 6 1.7430 -2.1567 1.1790 23 8 0.7246 -3.0165 0.6227 24 6 1.2141 -3.3901 -0.6837 25 6 1.8415 -2.0989 -1.2542 26 1 2.7399 -2.3311 -1.8262 27 8 0.8987 -1.3979 -2.0678 28 1 -0.3634 -0.0172 -1.0275 29 1 -0.3634 -0.8813 0.5287 30 1 -0.3634 0.8985 0.4989 31 1 -0.1864 1.6092 -1.2991 32 1 -1.4058 3.7346 -1.4944 33 1 -0.5228 5.7694 -0.4352 34 1 1.9195 9.0353 3.8812 35 1 2.8392 3.5635 1.0272 36 1 2.5784 -2.7496 1.5514 37 1 1.3266 -1.5428 1.9776 38 1 0.3914 -3.7237 -1.3161 39 1 1.9679 -4.1728 -0.5989 40 1 0.6399 -1.8737 -2.8688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342436489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:37 Heat of formation + Delta-G solvation = -103.806797 kcal Electronic energy + Delta-G solvation = -24951.644257 eV Core-core repulsion = 21243.542288 eV Total energy + Delta-G solvation = -3708.101969 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.85390 -40.43484 -39.02384 -37.03858 -36.32373 -34.65006 -32.79862 -31.98599 -30.90123 -29.42312 -27.90030 -27.73107 -25.16778 -23.76976 -23.68795 -22.17253 -20.73230 -19.87600 -18.84033 -18.20401 -17.85201 -17.54922 -17.06677 -17.01405 -16.92527 -16.41078 -16.19308 -15.58892 -15.46917 -15.02194 -14.67918 -14.50842 -14.30051 -14.14461 -13.88931 -13.65347 -13.34402 -13.15893 -12.97667 -12.95345 -12.82202 -12.57928 -12.53477 -12.38832 -12.27288 -11.71623 -11.29745 -11.22170 -11.05925 -10.75910 -10.65402 -10.00585 -9.66152 -9.57307 -8.81559 -8.38372 -6.19227 -0.13249 0.25176 1.30203 1.39572 1.45949 1.61998 1.65964 1.86095 2.24637 2.73487 2.86259 2.94363 3.18847 3.42281 3.46156 3.50388 3.73140 3.92122 3.94668 4.00376 4.15995 4.25786 4.36246 4.39123 4.46273 4.58531 4.60751 4.66530 4.71907 4.76855 4.83074 4.90772 5.07850 5.22803 5.32576 5.38432 5.45745 5.49870 5.66941 5.86749 6.16138 6.22869 6.87742 7.00996 7.01306 8.68616 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.003073 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.699679 B = 9110.831216 C = 9571.626590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.577 5.577 3 C 0.562 3.438 4 O -0.584 6.584 5 C -0.153 4.153 6 C -0.070 4.070 7 C -0.123 4.123 8 C -0.065 4.065 9 C -0.127 4.127 10 S -0.098 6.098 11 C -0.536 4.536 12 H 0.069 0.931 13 C 0.020 3.980 14 N -0.907 5.907 15 Si 0.993 3.007 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.261 1.261 19 C -0.046 4.046 20 C 0.100 3.900 21 H 0.106 0.894 22 C 0.039 3.961 23 O -0.382 6.382 24 C 0.018 3.982 25 C 0.069 3.931 26 H 0.093 0.907 27 O -0.559 6.559 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.131 0.869 34 H 0.274 0.726 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 -25.671 -11.299 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.307 5.307 3 C 0.352 3.648 4 O -0.465 6.465 5 C -0.158 4.158 6 C -0.088 4.088 7 C -0.142 4.142 8 C -0.085 4.085 9 C -0.238 4.238 10 S 0.137 5.863 11 C -0.683 4.683 12 H 0.087 0.913 13 C -0.185 4.185 14 N -0.544 5.544 15 Si 0.815 3.185 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.185 1.185 19 C -0.068 4.068 20 C -0.004 4.004 21 H 0.124 0.876 22 C -0.038 4.038 23 O -0.301 6.301 24 C -0.059 4.059 25 C 0.008 3.992 26 H 0.111 0.889 27 O -0.368 6.368 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.191 0.809 32 H 0.190 0.810 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.569 -24.330 -10.988 27.271 hybrid contribution -0.531 -0.622 1.025 1.311 sum -6.100 -24.952 -9.963 27.552 Atomic orbital electron populations 1.22344 0.77224 1.03037 1.03565 1.47323 1.08209 1.03687 1.71468 1.18516 0.86433 0.84442 0.75404 1.90715 1.15597 1.87793 1.52433 1.19866 0.98447 0.92555 1.04919 1.22150 0.91517 0.99958 0.95203 1.21540 1.01555 0.90978 1.00121 1.22054 0.93224 0.99979 0.93287 1.22430 0.99587 0.98538 1.03226 1.83553 1.58668 1.25155 1.18948 1.23027 1.33013 1.08603 1.03689 0.91315 1.26022 0.96252 0.93694 1.02569 1.70109 1.37770 1.08517 1.37957 0.85078 0.78800 0.78087 0.76552 1.19346 1.19667 1.18510 1.21554 0.97975 0.91142 0.96138 1.22810 0.98373 0.83679 0.95534 0.87632 1.23811 0.92656 0.91908 0.95439 1.89161 1.42577 1.66932 1.31460 1.24368 1.00932 0.96029 0.84581 1.23508 0.93115 0.91008 0.91523 0.88931 1.86595 1.62753 1.48375 1.39059 0.88912 0.90035 0.91516 0.80862 0.80969 0.85138 0.91689 0.87738 0.88884 0.89158 0.86522 0.89508 0.75283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 7.47 127.77 0.95 2.46 16 2 N -0.58 -14.09 2.41 -820.31 -1.98 -16.06 16 3 C 0.56 19.02 7.43 86.79 0.64 19.67 16 4 O -0.58 -24.06 16.09 -3.88 -0.06 -24.12 16 5 C -0.15 -5.35 5.31 -20.11 -0.11 -5.45 16 6 C -0.07 -1.86 7.61 22.57 0.17 -1.69 16 7 C -0.12 -3.29 10.02 22.21 0.22 -3.07 16 8 C -0.06 -2.39 9.79 22.48 0.22 -2.17 16 9 C -0.13 -5.78 5.45 22.65 0.12 -5.65 16 10 S -0.10 -5.47 21.41 -56.49 -1.21 -6.67 16 11 C -0.54 -31.61 9.46 67.94 0.64 -30.97 16 12 H 0.07 3.98 7.79 -2.91 -0.02 3.96 16 13 C 0.02 1.14 5.49 84.84 0.47 1.60 16 14 N -0.91 -55.00 13.22 21.64 0.29 -54.71 16 15 Si 0.99 44.42 29.55 68.60 2.03 46.45 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 19 C -0.05 -2.01 9.34 22.70 0.21 -1.80 16 20 C 0.10 1.96 3.53 46.01 0.16 2.13 16 21 H 0.11 2.42 6.98 -2.39 -0.02 2.41 16 22 C 0.04 0.65 6.48 72.49 0.47 1.12 16 23 O -0.38 -6.16 10.67 -148.98 -1.59 -7.75 16 24 C 0.02 0.16 7.38 72.49 0.53 0.69 16 25 C 0.07 0.83 4.38 31.61 0.14 0.96 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 O -0.56 -6.53 10.00 -148.98 -1.49 -8.02 16 28 H 0.09 1.44 5.18 -2.39 -0.01 1.43 16 29 H 0.08 1.45 6.27 -2.39 -0.01 1.43 16 30 H 0.07 1.39 5.83 -2.39 -0.01 1.38 16 31 H 0.17 3.27 4.90 -2.91 -0.01 3.26 16 32 H 0.17 3.02 8.06 -2.92 -0.02 3.00 16 33 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.10 5.03 7.92 -2.91 -0.02 5.01 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.09 1.72 7.95 -2.39 -0.02 1.70 16 38 H 0.12 0.62 8.09 -2.39 -0.02 0.60 16 39 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.40 0.91 9.12 -74.06 -0.68 0.24 16 Total: -1.00 -80.30 342.72 1.25 -79.05 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.41 Total: 14.00 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.86 Total: -22.15 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.69 Total: -70.78 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -3.14 Total: -39.89 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -1.21 Total: -6.67 kcal Total: -80.30 1.25 -79.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342436489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.756 kcal (2) G-P(sol) polarization free energy of solvation -80.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds